Strain Fitness in Pantoea sp. MT58 around IAI47_05170

Experiment: Ying_sugar7 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 1
1,093,464	+		IAI47_05165	0.43	+0.2
1,093,464	+		IAI47_05165	0.43	-0.5
1,093,465	-		IAI47_05165	0.43	-0.8
1,093,465	-		IAI47_05165	0.43	+0.7
1,093,465	-		IAI47_05165	0.43	+3.1
1,093,534	+		IAI47_05165	0.47	+0.4
1,093,534	+		IAI47_05165	0.47	+0.4
1,093,534	+		IAI47_05165	0.47	-2.7
1,093,535	-		IAI47_05165	0.48	+0.0
1,093,535	-		IAI47_05165	0.48	-1.0
1,093,581	+		IAI47_05165	0.50	-0.4
1,093,581	+		IAI47_05165	0.50	-1.9
1,093,644	+		IAI47_05165	0.54	+0.9
1,093,645	-		IAI47_05165	0.54	+0.5
1,093,727	+		IAI47_05165	0.59	+0.6
1,093,727	+		IAI47_05165	0.59	+3.5
1,093,728	-		IAI47_05165	0.59	-2.3
1,093,728	-		IAI47_05165	0.59	-0.1
1,093,809	+		IAI47_05165	0.64	+0.5
1,093,809	+		IAI47_05165	0.64	+0.9
1,093,810	-		IAI47_05165	0.64	+0.9
1,093,810	-		IAI47_05165	0.64	-2.1
1,093,977	+		IAI47_05165	0.75	-1.4
1,093,978	-		IAI47_05165	0.75	-0.8
1,093,985	-		IAI47_05165	0.75	+0.9
1,094,052	+		IAI47_05165	0.79	-0.1
1,094,052	+		IAI47_05165	0.79	-2.3
1,094,052	+		IAI47_05165	0.79	-1.4
1,094,052	+		IAI47_05165	0.79	-1.9
1,094,052	+		IAI47_05165	0.79	-0.5
1,094,052	+		IAI47_05165	0.79	+0.7
1,094,053	-		IAI47_05165	0.79	-0.9
1,094,053	-		IAI47_05165	0.79	-0.2
1,094,053	-		IAI47_05165	0.79	-0.5
1,094,053	-		IAI47_05165	0.79	+0.2
1,094,053	-		IAI47_05165	0.79	-0.4
1,094,053	-		IAI47_05165	0.79	-1.4
1,094,053	-		IAI47_05165	0.79	+0.5
1,094,053	-		IAI47_05165	0.79	+0.4
1,094,148	+		IAI47_05165	0.85	+0.9
1,094,151	+		IAI47_05165	0.85	-0.3
1,094,152	-		IAI47_05165	0.85	+0.2
1,094,152	-		IAI47_05165	0.85	-0.1
1,094,152	-		IAI47_05165	0.85	-0.2
1,094,192	+		IAI47_05165	0.88	-0.3
1,094,193	-		IAI47_05165	0.88	-1.1
1,094,215	+		IAI47_05165	0.89	+0.4
1,094,215	+		IAI47_05165	0.89	+1.6
1,094,215	+		IAI47_05165	0.89	+0.4
1,094,215	+		IAI47_05165	0.89	+0.7
1,094,215	+		IAI47_05165	0.89	+0.9
1,094,215	+		IAI47_05165	0.89	+0.6
1,094,215	+		IAI47_05165	0.89	+0.9
1,094,216	-		IAI47_05165	0.89	+0.5
1,094,216	-		IAI47_05165	0.89	-0.4
1,094,216	-		IAI47_05165	0.89	-0.8
1,094,216	-		IAI47_05165	0.89	-0.1
1,094,216	-		IAI47_05165	0.89	+0.9
1,094,216	-		IAI47_05165	0.89	+0.2
1,094,237	+				+1.9
1,094,263	+				-0.8
1,094,263	+				-0.6
1,094,301	+				+0.0
1,094,302	-				+0.5
1,094,317	+				-0.7
1,094,317	+				+0.2
1,094,318	-				+0.6
1,094,318	-				+0.3
1,094,318	-				+0.4
1,094,329	+				-0.4
1,094,330	-				-1.3
1,094,380	+				+1.2
1,094,380	+				-0.0
1,094,380	+				-1.1
1,094,380	+				-0.6
1,094,380	+				-0.1
1,094,381	-				+0.6
1,094,381	-				-0.2
1,094,381	-				-0.1
1,094,391	-				+0.9
1,094,398	+				-1.1
1,094,398	+				-0.2
1,094,398	+				-0.2
1,094,399	-				+0.6
1,094,404	+				+0.1
1,094,404	+				+1.9
1,094,404	+				-1.2
1,094,404	+				-0.4
1,094,404	+				-2.1
1,094,405	-				+1.9
1,094,405	-				-0.8
1,094,405	-				-0.9
1,094,405	-				+0.3
1,094,405	-				-0.5
1,094,456	+				-0.1
1,094,482	+		IAI47_05170	0.11	+1.5
1,094,483	-		IAI47_05170	0.11	-1.7
1,094,487	-		IAI47_05170	0.11	+0.6
1,094,512	+		IAI47_05170	0.15	-0.2
1,094,512	+		IAI47_05170	0.15	-0.3
1,094,512	+		IAI47_05170	0.15	+0.7
1,094,512	+		IAI47_05170	0.15	-0.4
1,094,513	-		IAI47_05170	0.15	+1.6
1,094,513	-		IAI47_05170	0.15	-1.9
1,094,513	-		IAI47_05170	0.15	+0.8
1,094,566	+		IAI47_05170	0.22	-0.3
1,094,566	+		IAI47_05170	0.22	+0.9
1,094,566	+		IAI47_05170	0.22	+0.6
1,094,566	+		IAI47_05170	0.22	-0.1
1,094,567	-		IAI47_05170	0.22	-0.1
1,094,567	-		IAI47_05170	0.22	+0.1
1,094,572	+		IAI47_05170	0.22	-1.9
1,094,573	-		IAI47_05170	0.22	+0.1
1,094,602	-		IAI47_05170	0.26	+0.6
1,094,681	-		IAI47_05170	0.36	-0.7
1,094,720	+		IAI47_05170	0.41	-1.5
1,094,720	+		IAI47_05170	0.41	+1.5
1,094,720	+		IAI47_05170	0.41	+0.2
1,094,721	-		IAI47_05170	0.42	+0.9
1,094,721	-		IAI47_05170	0.42	-0.7
1,094,735	+		IAI47_05170	0.43	+0.0
1,094,735	+		IAI47_05170	0.43	+1.2
1,094,735	+		IAI47_05170	0.43	+0.4
1,094,736	-		IAI47_05170	0.44	+0.5
1,094,748	+		IAI47_05170	0.45	-0.7
1,094,773	-		IAI47_05170	0.48	+0.1
1,094,773	-		IAI47_05170	0.48	+0.7
1,094,962	+		IAI47_05170	0.73	-1.1
1,094,962	+		IAI47_05170	0.73	-0.1
1,094,962	+		IAI47_05170	0.73	-0.6
1,094,962	+		IAI47_05170	0.73	+0.1
1,094,963	-		IAI47_05170	0.73	+0.5
1,095,059	+		IAI47_05170	0.85	+0.9
1,095,060	-		IAI47_05170	0.85	-0.8
1,095,060	-		IAI47_05170	0.85	+1.9
1,095,070	+		IAI47_05170	0.87	-0.2
1,095,070	+		IAI47_05170	0.87	+0.3
1,095,070	+		IAI47_05170	0.87	-0.9
1,095,070	+		IAI47_05170	0.87	+0.0
1,095,070	+		IAI47_05170	0.87	+0.9
1,095,070	+		IAI47_05170	0.87	+0.3
1,095,071	-		IAI47_05170	0.87	+0.5
1,095,071	-		IAI47_05170	0.87	+0.6
1,095,071	-		IAI47_05170	0.87	+0.7
1,095,071	-		IAI47_05170	0.87	-0.3
1,095,071	-		IAI47_05170	0.87	+0.9
1,095,149	+				+2.1
1,095,149	+				-0.1
1,095,149	+				-1.0
1,095,150	-				-0.6
1,095,150	-				+0.3
1,095,150	-				-0.3
1,095,150	-				+0.2
1,095,150	-				-0.9
1,095,151	+				-0.1
1,095,152	-				-0.2
1,095,152	-				-0.7
1,095,152	-				-0.4
1,095,152	-				-1.4
1,095,165	-				+0.9
1,095,285	-				+0.2
1,095,289	+				-0.1
1,095,289	+				+0.2
1,095,290	-				+0.5
1,095,290	-				+1.5
1,095,290	-				+1.5
1,095,290	-				-0.7
1,095,290	-				+0.1
1,095,290	-				-1.1
1,095,382	+		IAI47_05175	0.17	-1.6
1,095,383	-		IAI47_05175	0.17	-1.6
1,095,383	-		IAI47_05175	0.17	-2.9
1,095,383	-		IAI47_05175	0.17	-2.3
1,095,386	+		IAI47_05175	0.17	-1.9
1,095,386	+		IAI47_05175	0.17	-1.3
1,095,386	+		IAI47_05175	0.17	-0.5
1,095,386	+		IAI47_05175	0.17	-2.8
1,095,386	+		IAI47_05175	0.17	-2.3
1,095,386	+		IAI47_05175	0.17	-1.3
1,095,387	-		IAI47_05175	0.17	-4.5
1,095,387	-		IAI47_05175	0.17	-0.7
1,095,387	-		IAI47_05175	0.17	-2.0
1,095,387	-		IAI47_05175	0.17	-0.1
1,095,387	-		IAI47_05175	0.17	+1.9
1,095,387	-		IAI47_05175	0.17	-0.4
1,095,387	-		IAI47_05175	0.17	-2.7
1,095,387	-		IAI47_05175	0.17	-0.1
1,095,416	+		IAI47_05175	0.22	+0.3
1,095,554	+		IAI47_05175	0.44	-1.6
1,095,554	+		IAI47_05175	0.44	-3.1
1,095,554	+		IAI47_05175	0.44	-1.4
1,095,554	+		IAI47_05175	0.44	-1.1
1,095,554	+		IAI47_05175	0.44	-0.3
1,095,554	+		IAI47_05175	0.44	-0.1
1,095,554	+		IAI47_05175	0.44	-0.7
1,095,554	+		IAI47_05175	0.44	-2.7
1,095,554	+		IAI47_05175	0.44	-1.1
1,095,555	-		IAI47_05175	0.44	-1.7
1,095,568	+		IAI47_05175	0.46	-1.7
1,095,568	+		IAI47_05175	0.46	-1.7
1,095,593	+		IAI47_05175	0.50	-3.0
1,095,593	+		IAI47_05175	0.50	-3.3
1,095,593	+		IAI47_05175	0.50	-2.9
1,095,608	+		IAI47_05175	0.52	+0.9
1,095,647	+		IAI47_05175	0.58	-0.1
1,095,647	+		IAI47_05175	0.58	-1.1
1,095,647	+		IAI47_05175	0.58	-2.1
1,095,647	+		IAI47_05175	0.58	-2.1
1,095,647	+		IAI47_05175	0.58	-3.7
1,095,647	+		IAI47_05175	0.58	-2.7
1,095,647	+		IAI47_05175	0.58	-1.9
1,095,648	-		IAI47_05175	0.58	-0.9
1,095,648	-		IAI47_05175	0.58	-1.0
1,095,648	-		IAI47_05175	0.58	-1.7
1,095,648	-		IAI47_05175	0.58	+0.1
1,095,648	-		IAI47_05175	0.58	-2.0
1,095,649	+		IAI47_05175	0.58	-1.4
1,095,679	+		IAI47_05175	0.63	-2.1
1,095,680	-		IAI47_05175	0.63	-1.8
1,095,680	-		IAI47_05175	0.63	-0.3
1,095,790	+		IAI47_05175	0.80	-0.3
1,095,790	+		IAI47_05175	0.80	-2.2
1,095,791	-		IAI47_05175	0.81	-2.7
1,095,875	+				-0.7
1,095,876	-				-1.6
1,095,876	-				-2.9
1,095,897	+				-3.2
1,095,897	+				-2.4
1,095,898	-				+1.3
1,095,898	-				+0.9
1,095,919	+				-1.8
1,095,923	-				-2.3
1,095,952	+				-2.6
1,096,058	-		IAI47_05180	0.14	-2.7
1,096,058	-		IAI47_05180	0.14	-1.7
1,096,068	+		IAI47_05180	0.15	-0.1
1,096,069	-		IAI47_05180	0.15	-1.1
1,096,069	-		IAI47_05180	0.15	-3.4
1,096,069	-		IAI47_05180	0.15	-1.9
1,096,069	-		IAI47_05180	0.15	-1.4
1,096,069	-		IAI47_05180	0.15	-3.0
1,096,069	-		IAI47_05180	0.15	-4.2
1,096,069	-		IAI47_05180	0.15	-1.9
1,096,159	+		IAI47_05180	0.24	-2.8
1,096,159	+		IAI47_05180	0.24	-0.7
1,096,159	+		IAI47_05180	0.24	-2.8
1,096,160	-		IAI47_05180	0.24	-2.3
1,096,160	-		IAI47_05180	0.24	-3.2
1,096,160	-		IAI47_05180	0.24	-2.9
1,096,160	-		IAI47_05180	0.24	-3.3
1,096,160	-		IAI47_05180	0.24	-2.2
1,096,160	-		IAI47_05180	0.24	-4.2
1,096,160	-		IAI47_05180	0.24	-2.1
1,096,172	+		IAI47_05180	0.25	-2.1