Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04391

Experiment: Thymine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04389 and MPMX20_04390 are separated by 169 nucleotidesMPMX20_04390 and MPMX20_04391 overlap by 1 nucleotidesMPMX20_04391 and MPMX20_04392 are separated by 32 nucleotides MPMX20_04389: MPMX20_04389 - HTH-type transcriptional regulator KipR, at 4,579,752 to 4,580,489 _04389 MPMX20_04390: MPMX20_04390 - 4-hydroxy-4-methyl-2-oxoglutarate aldolase/4-carboxy-4-hydroxy-2-oxoadipate aldolase, at 4,580,659 to 4,581,351 _04390 MPMX20_04391: MPMX20_04391 - Hydroxypyruvate reductase, at 4,581,351 to 4,582,289 _04391 MPMX20_04392: MPMX20_04392 - hypothetical protein, at 4,582,322 to 4,583,602 _04392 Position (kb) 4581 4582 4583Strain fitness (log2 ratio) -2 -1 0 1 2at 4580.383 kb on + strand, within MPMX20_04389at 4580.383 kb on + strand, within MPMX20_04389at 4580.391 kb on - strand, within MPMX20_04389at 4580.416 kb on - strandat 4580.423 kb on + strandat 4580.443 kb on + strandat 4580.511 kb on + strandat 4580.546 kb on - strandat 4580.566 kb on + strandat 4580.731 kb on + strand, within MPMX20_04390at 4580.749 kb on + strand, within MPMX20_04390at 4580.790 kb on - strand, within MPMX20_04390at 4580.790 kb on - strand, within MPMX20_04390at 4580.827 kb on + strand, within MPMX20_04390at 4580.840 kb on - strand, within MPMX20_04390at 4580.865 kb on - strand, within MPMX20_04390at 4580.932 kb on + strand, within MPMX20_04390at 4580.932 kb on + strand, within MPMX20_04390at 4580.932 kb on + strand, within MPMX20_04390at 4580.940 kb on - strand, within MPMX20_04390at 4580.982 kb on - strand, within MPMX20_04390at 4581.024 kb on - strand, within MPMX20_04390at 4581.043 kb on + strand, within MPMX20_04390at 4581.043 kb on + strand, within MPMX20_04390at 4581.051 kb on - strand, within MPMX20_04390at 4581.067 kb on + strand, within MPMX20_04390at 4581.075 kb on + strand, within MPMX20_04390at 4581.077 kb on + strand, within MPMX20_04390at 4581.150 kb on - strand, within MPMX20_04390at 4581.169 kb on + strand, within MPMX20_04390at 4581.187 kb on - strand, within MPMX20_04390at 4581.225 kb on + strand, within MPMX20_04390at 4581.233 kb on - strand, within MPMX20_04390at 4581.233 kb on - strand, within MPMX20_04390at 4581.262 kb on + strand, within MPMX20_04390at 4581.377 kb on - strandat 4581.396 kb on + strandat 4581.421 kb on + strandat 4581.421 kb on + strandat 4581.429 kb on - strandat 4581.484 kb on - strand, within MPMX20_04391at 4581.485 kb on + strand, within MPMX20_04391at 4581.485 kb on + strand, within MPMX20_04391at 4581.493 kb on - strand, within MPMX20_04391at 4581.493 kb on - strand, within MPMX20_04391at 4581.524 kb on - strand, within MPMX20_04391at 4581.605 kb on - strand, within MPMX20_04391at 4581.605 kb on - strand, within MPMX20_04391at 4581.605 kb on - strand, within MPMX20_04391at 4581.607 kb on - strand, within MPMX20_04391at 4581.647 kb on - strand, within MPMX20_04391at 4581.687 kb on + strand, within MPMX20_04391at 4581.745 kb on + strand, within MPMX20_04391at 4581.746 kb on + strand, within MPMX20_04391at 4581.754 kb on - strand, within MPMX20_04391at 4581.758 kb on + strand, within MPMX20_04391at 4581.759 kb on + strand, within MPMX20_04391at 4581.766 kb on - strand, within MPMX20_04391at 4581.787 kb on + strand, within MPMX20_04391at 4581.787 kb on + strand, within MPMX20_04391at 4581.787 kb on + strand, within MPMX20_04391at 4581.787 kb on + strand, within MPMX20_04391at 4581.789 kb on - strand, within MPMX20_04391at 4581.795 kb on - strand, within MPMX20_04391at 4581.795 kb on - strand, within MPMX20_04391at 4581.795 kb on - strand, within MPMX20_04391at 4581.811 kb on + strand, within MPMX20_04391at 4581.884 kb on + strand, within MPMX20_04391at 4581.884 kb on + strand, within MPMX20_04391at 4581.884 kb on + strand, within MPMX20_04391at 4581.884 kb on + strand, within MPMX20_04391at 4581.889 kb on + strand, within MPMX20_04391at 4581.889 kb on + strand, within MPMX20_04391at 4581.892 kb on - strand, within MPMX20_04391at 4581.892 kb on - strand, within MPMX20_04391at 4581.892 kb on - strand, within MPMX20_04391at 4581.897 kb on - strand, within MPMX20_04391at 4581.899 kb on + strand, within MPMX20_04391at 4581.937 kb on - strand, within MPMX20_04391at 4581.942 kb on + strand, within MPMX20_04391at 4581.951 kb on + strand, within MPMX20_04391at 4581.951 kb on + strand, within MPMX20_04391at 4581.970 kb on - strand, within MPMX20_04391at 4581.971 kb on - strand, within MPMX20_04391at 4581.996 kb on + strand, within MPMX20_04391at 4582.011 kb on - strand, within MPMX20_04391at 4582.011 kb on - strand, within MPMX20_04391at 4582.103 kb on + strand, within MPMX20_04391at 4582.103 kb on + strand, within MPMX20_04391at 4582.106 kb on - strand, within MPMX20_04391at 4582.108 kb on + strand, within MPMX20_04391at 4582.108 kb on + strand, within MPMX20_04391at 4582.111 kb on - strand, within MPMX20_04391at 4582.113 kb on + strand, within MPMX20_04391at 4582.113 kb on + strand, within MPMX20_04391at 4582.113 kb on + strand, within MPMX20_04391at 4582.116 kb on - strand, within MPMX20_04391at 4582.123 kb on + strand, within MPMX20_04391at 4582.131 kb on - strand, within MPMX20_04391at 4582.131 kb on - strand, within MPMX20_04391at 4582.154 kb on + strand, within MPMX20_04391at 4582.234 kb on - strandat 4582.242 kb on - strandat 4582.266 kb on + strandat 4582.284 kb on + strandat 4582.321 kb on - strandat 4582.352 kb on + strandat 4582.354 kb on + strandat 4582.360 kb on - strandat 4582.403 kb on + strandat 4582.418 kb on - strandat 4582.461 kb on - strand, within MPMX20_04392at 4582.465 kb on - strand, within MPMX20_04392at 4582.491 kb on - strand, within MPMX20_04392at 4582.540 kb on + strand, within MPMX20_04392at 4582.568 kb on - strand, within MPMX20_04392at 4582.638 kb on - strand, within MPMX20_04392at 4582.661 kb on + strand, within MPMX20_04392at 4582.669 kb on - strand, within MPMX20_04392at 4582.751 kb on - strand, within MPMX20_04392at 4582.867 kb on - strand, within MPMX20_04392at 4582.869 kb on + strand, within MPMX20_04392at 4582.874 kb on - strand, within MPMX20_04392at 4582.902 kb on + strand, within MPMX20_04392at 4582.923 kb on + strand, within MPMX20_04392at 4582.931 kb on - strand, within MPMX20_04392at 4582.931 kb on - strand, within MPMX20_04392at 4582.956 kb on - strand, within MPMX20_04392at 4583.008 kb on - strand, within MPMX20_04392at 4583.016 kb on - strand, within MPMX20_04392at 4583.021 kb on - strand, within MPMX20_04392at 4583.035 kb on + strand, within MPMX20_04392at 4583.043 kb on - strand, within MPMX20_04392at 4583.094 kb on + strand, within MPMX20_04392at 4583.094 kb on + strand, within MPMX20_04392at 4583.094 kb on + strand, within MPMX20_04392at 4583.094 kb on + strand, within MPMX20_04392at 4583.094 kb on + strand, within MPMX20_04392at 4583.102 kb on - strand, within MPMX20_04392at 4583.102 kb on - strand, within MPMX20_04392at 4583.102 kb on - strand, within MPMX20_04392at 4583.102 kb on - strand, within MPMX20_04392at 4583.107 kb on - strand, within MPMX20_04392at 4583.208 kb on + strand, within MPMX20_04392at 4583.266 kb on + strand, within MPMX20_04392

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymine (N)
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4,580,383 + MPMX20_04389 0.86 +0.2
4,580,383 + MPMX20_04389 0.86 -1.9
4,580,391 - MPMX20_04389 0.87 -1.2
4,580,416 - -0.5
4,580,423 + -0.8
4,580,443 + -0.6
4,580,511 + +0.5
4,580,546 - +0.1
4,580,566 + -1.0
4,580,731 + MPMX20_04390 0.10 -1.0
4,580,749 + MPMX20_04390 0.13 +0.1
4,580,790 - MPMX20_04390 0.19 -0.9
4,580,790 - MPMX20_04390 0.19 -0.6
4,580,827 + MPMX20_04390 0.24 -0.4
4,580,840 - MPMX20_04390 0.26 -0.5
4,580,865 - MPMX20_04390 0.30 -2.5
4,580,932 + MPMX20_04390 0.39 -1.4
4,580,932 + MPMX20_04390 0.39 -0.7
4,580,932 + MPMX20_04390 0.39 +1.4
4,580,940 - MPMX20_04390 0.41 +1.8
4,580,982 - MPMX20_04390 0.47 +0.4
4,581,024 - MPMX20_04390 0.53 -0.7
4,581,043 + MPMX20_04390 0.55 +1.7
4,581,043 + MPMX20_04390 0.55 -0.6
4,581,051 - MPMX20_04390 0.57 +0.4
4,581,067 + MPMX20_04390 0.59 -1.8
4,581,075 + MPMX20_04390 0.60 -1.3
4,581,077 + MPMX20_04390 0.60 +0.7
4,581,150 - MPMX20_04390 0.71 +0.1
4,581,169 + MPMX20_04390 0.74 -0.6
4,581,187 - MPMX20_04390 0.76 -1.8
4,581,225 + MPMX20_04390 0.82 -1.0
4,581,233 - MPMX20_04390 0.83 +0.4
4,581,233 - MPMX20_04390 0.83 +0.6
4,581,262 + MPMX20_04390 0.87 -0.3
4,581,377 - -0.6
4,581,396 + +0.8
4,581,421 + -0.2
4,581,421 + +0.8
4,581,429 - -0.0
4,581,484 - MPMX20_04391 0.14 +1.5
4,581,485 + MPMX20_04391 0.14 +0.1
4,581,485 + MPMX20_04391 0.14 -0.4
4,581,493 - MPMX20_04391 0.15 +0.2
4,581,493 - MPMX20_04391 0.15 +0.2
4,581,524 - MPMX20_04391 0.18 +0.0
4,581,605 - MPMX20_04391 0.27 +0.9
4,581,605 - MPMX20_04391 0.27 +0.1
4,581,605 - MPMX20_04391 0.27 -0.0
4,581,607 - MPMX20_04391 0.27 +1.2
4,581,647 - MPMX20_04391 0.32 -1.3
4,581,687 + MPMX20_04391 0.36 -0.7
4,581,745 + MPMX20_04391 0.42 +1.0
4,581,746 + MPMX20_04391 0.42 +0.2
4,581,754 - MPMX20_04391 0.43 +1.8
4,581,758 + MPMX20_04391 0.43 -1.3
4,581,759 + MPMX20_04391 0.43 +0.2
4,581,766 - MPMX20_04391 0.44 +0.2
4,581,787 + MPMX20_04391 0.46 +0.4
4,581,787 + MPMX20_04391 0.46 -0.8
4,581,787 + MPMX20_04391 0.46 -0.7
4,581,787 + MPMX20_04391 0.46 -0.3
4,581,789 - MPMX20_04391 0.47 +0.8
4,581,795 - MPMX20_04391 0.47 +0.8
4,581,795 - MPMX20_04391 0.47 -0.3
4,581,795 - MPMX20_04391 0.47 +0.1
4,581,811 + MPMX20_04391 0.49 -0.8
4,581,884 + MPMX20_04391 0.57 -1.4
4,581,884 + MPMX20_04391 0.57 +0.6
4,581,884 + MPMX20_04391 0.57 -1.8
4,581,884 + MPMX20_04391 0.57 +1.0
4,581,889 + MPMX20_04391 0.57 -0.3
4,581,889 + MPMX20_04391 0.57 -1.4
4,581,892 - MPMX20_04391 0.58 +0.1
4,581,892 - MPMX20_04391 0.58 -0.3
4,581,892 - MPMX20_04391 0.58 -1.0
4,581,897 - MPMX20_04391 0.58 -0.1
4,581,899 + MPMX20_04391 0.58 +1.3
4,581,937 - MPMX20_04391 0.62 +0.8
4,581,942 + MPMX20_04391 0.63 +1.0
4,581,951 + MPMX20_04391 0.64 -0.4
4,581,951 + MPMX20_04391 0.64 -0.2
4,581,970 - MPMX20_04391 0.66 -0.4
4,581,971 - MPMX20_04391 0.66 -0.5
4,581,996 + MPMX20_04391 0.69 -0.2
4,582,011 - MPMX20_04391 0.70 +0.8
4,582,011 - MPMX20_04391 0.70 -0.5
4,582,103 + MPMX20_04391 0.80 -0.5
4,582,103 + MPMX20_04391 0.80 -0.6
4,582,106 - MPMX20_04391 0.80 +1.6
4,582,108 + MPMX20_04391 0.81 +0.9
4,582,108 + MPMX20_04391 0.81 -0.5
4,582,111 - MPMX20_04391 0.81 -0.1
4,582,113 + MPMX20_04391 0.81 -0.5
4,582,113 + MPMX20_04391 0.81 -0.7
4,582,113 + MPMX20_04391 0.81 +1.5
4,582,116 - MPMX20_04391 0.81 +0.3
4,582,123 + MPMX20_04391 0.82 -1.5
4,582,131 - MPMX20_04391 0.83 -0.4
4,582,131 - MPMX20_04391 0.83 +0.1
4,582,154 + MPMX20_04391 0.86 +0.4
4,582,234 - -1.0
4,582,242 - -0.3
4,582,266 + -0.3
4,582,284 + -0.4
4,582,321 - -0.0
4,582,352 + -0.7
4,582,354 + -1.0
4,582,360 - -0.2
4,582,403 + +0.5
4,582,418 - -0.3
4,582,461 - MPMX20_04392 0.11 -1.5
4,582,465 - MPMX20_04392 0.11 +0.7
4,582,491 - MPMX20_04392 0.13 +0.2
4,582,540 + MPMX20_04392 0.17 +0.4
4,582,568 - MPMX20_04392 0.19 -0.5
4,582,638 - MPMX20_04392 0.25 -1.2
4,582,661 + MPMX20_04392 0.26 +0.6
4,582,669 - MPMX20_04392 0.27 -0.3
4,582,751 - MPMX20_04392 0.33 +0.3
4,582,867 - MPMX20_04392 0.43 -1.8
4,582,869 + MPMX20_04392 0.43 +0.5
4,582,874 - MPMX20_04392 0.43 -0.2
4,582,902 + MPMX20_04392 0.45 +1.3
4,582,923 + MPMX20_04392 0.47 +0.5
4,582,931 - MPMX20_04392 0.48 -0.1
4,582,931 - MPMX20_04392 0.48 +0.3
4,582,956 - MPMX20_04392 0.49 +1.4
4,583,008 - MPMX20_04392 0.54 +0.3
4,583,016 - MPMX20_04392 0.54 -1.7
4,583,021 - MPMX20_04392 0.55 +0.9
4,583,035 + MPMX20_04392 0.56 -0.1
4,583,043 - MPMX20_04392 0.56 +0.1
4,583,094 + MPMX20_04392 0.60 +0.9
4,583,094 + MPMX20_04392 0.60 -0.8
4,583,094 + MPMX20_04392 0.60 -1.7
4,583,094 + MPMX20_04392 0.60 +0.3
4,583,094 + MPMX20_04392 0.60 -0.9
4,583,102 - MPMX20_04392 0.61 -0.1
4,583,102 - MPMX20_04392 0.61 +2.5
4,583,102 - MPMX20_04392 0.61 -1.0
4,583,102 - MPMX20_04392 0.61 -0.1
4,583,107 - MPMX20_04392 0.61 +0.5
4,583,208 + MPMX20_04392 0.69 -2.0
4,583,266 + MPMX20_04392 0.74 -0.0

Or see this region's nucleotide sequence