Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03330

Experiment: Thymine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03329 and MPMX20_03330 are separated by 152 nucleotidesMPMX20_03330 and MPMX20_03331 are separated by 142 nucleotides MPMX20_03329: MPMX20_03329 - Ferredoxin--NADP reductase, at 3,498,757 to 3,500,733 _03329 MPMX20_03330: MPMX20_03330 - Nitrate/nitrite sensor protein NarQ, at 3,500,886 to 3,502,580 _03330 MPMX20_03331: MPMX20_03331 - Multidrug efflux pump subunit AcrB, at 3,502,723 to 3,505,836 _03331 Position (kb) 3500 3501 3502 3503Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3499.928 kb on + strand, within MPMX20_03329at 3499.945 kb on + strand, within MPMX20_03329at 3499.963 kb on - strand, within MPMX20_03329at 3499.973 kb on + strand, within MPMX20_03329at 3500.030 kb on + strand, within MPMX20_03329at 3500.041 kb on - strand, within MPMX20_03329at 3500.059 kb on + strand, within MPMX20_03329at 3500.072 kb on + strand, within MPMX20_03329at 3500.072 kb on + strand, within MPMX20_03329at 3500.072 kb on + strand, within MPMX20_03329at 3500.077 kb on + strand, within MPMX20_03329at 3500.082 kb on + strand, within MPMX20_03329at 3500.163 kb on + strand, within MPMX20_03329at 3500.163 kb on + strand, within MPMX20_03329at 3500.166 kb on - strand, within MPMX20_03329at 3500.224 kb on + strand, within MPMX20_03329at 3500.228 kb on - strand, within MPMX20_03329at 3500.252 kb on - strand, within MPMX20_03329at 3500.300 kb on + strand, within MPMX20_03329at 3500.313 kb on + strand, within MPMX20_03329at 3500.356 kb on + strand, within MPMX20_03329at 3500.375 kb on - strand, within MPMX20_03329at 3500.468 kb on - strand, within MPMX20_03329at 3500.490 kb on + strand, within MPMX20_03329at 3500.496 kb on - strand, within MPMX20_03329at 3500.546 kb on - strandat 3500.546 kb on - strandat 3500.562 kb on + strandat 3500.562 kb on + strandat 3500.576 kb on + strandat 3500.578 kb on + strandat 3500.581 kb on + strandat 3500.584 kb on - strandat 3500.612 kb on - strandat 3500.684 kb on - strandat 3500.819 kb on - strandat 3500.849 kb on + strandat 3500.913 kb on + strandat 3500.921 kb on - strandat 3500.957 kb on + strandat 3500.957 kb on + strandat 3500.957 kb on + strandat 3500.960 kb on - strandat 3500.960 kb on - strandat 3500.962 kb on + strandat 3500.965 kb on + strandat 3500.965 kb on - strandat 3500.975 kb on + strandat 3500.983 kb on - strandat 3500.983 kb on - strandat 3501.036 kb on + strandat 3501.096 kb on + strand, within MPMX20_03330at 3501.123 kb on - strand, within MPMX20_03330at 3501.166 kb on + strand, within MPMX20_03330at 3501.221 kb on - strand, within MPMX20_03330at 3501.221 kb on - strand, within MPMX20_03330at 3501.238 kb on - strand, within MPMX20_03330at 3501.298 kb on + strand, within MPMX20_03330at 3501.306 kb on - strand, within MPMX20_03330at 3501.306 kb on - strand, within MPMX20_03330at 3501.308 kb on - strand, within MPMX20_03330at 3501.308 kb on - strand, within MPMX20_03330at 3501.308 kb on - strand, within MPMX20_03330at 3501.308 kb on - strand, within MPMX20_03330at 3501.308 kb on - strand, within MPMX20_03330at 3501.313 kb on - strand, within MPMX20_03330at 3501.358 kb on - strand, within MPMX20_03330at 3501.381 kb on + strand, within MPMX20_03330at 3501.381 kb on + strand, within MPMX20_03330at 3501.518 kb on + strand, within MPMX20_03330at 3501.554 kb on - strand, within MPMX20_03330at 3501.556 kb on - strand, within MPMX20_03330at 3501.610 kb on + strand, within MPMX20_03330at 3501.635 kb on + strand, within MPMX20_03330at 3501.658 kb on + strand, within MPMX20_03330at 3501.658 kb on + strand, within MPMX20_03330at 3501.666 kb on - strand, within MPMX20_03330at 3501.762 kb on - strand, within MPMX20_03330at 3501.773 kb on + strand, within MPMX20_03330at 3501.781 kb on - strand, within MPMX20_03330at 3501.829 kb on - strand, within MPMX20_03330at 3501.881 kb on + strand, within MPMX20_03330at 3501.891 kb on - strand, within MPMX20_03330at 3501.902 kb on + strand, within MPMX20_03330at 3501.919 kb on + strand, within MPMX20_03330at 3502.005 kb on + strand, within MPMX20_03330at 3502.043 kb on + strand, within MPMX20_03330at 3502.051 kb on - strand, within MPMX20_03330at 3502.051 kb on - strand, within MPMX20_03330at 3502.051 kb on - strand, within MPMX20_03330at 3502.051 kb on - strand, within MPMX20_03330at 3502.062 kb on + strand, within MPMX20_03330at 3502.066 kb on + strand, within MPMX20_03330at 3502.116 kb on - strand, within MPMX20_03330at 3502.116 kb on - strand, within MPMX20_03330at 3502.117 kb on - strand, within MPMX20_03330at 3502.120 kb on + strand, within MPMX20_03330at 3502.122 kb on - strand, within MPMX20_03330at 3502.142 kb on + strand, within MPMX20_03330at 3502.317 kb on + strand, within MPMX20_03330at 3502.333 kb on + strand, within MPMX20_03330at 3502.387 kb on - strand, within MPMX20_03330at 3502.401 kb on - strand, within MPMX20_03330at 3502.433 kb on - strandat 3502.435 kb on + strandat 3502.485 kb on - strandat 3502.487 kb on + strandat 3502.492 kb on + strandat 3502.492 kb on + strandat 3502.492 kb on + strandat 3502.492 kb on + strandat 3502.500 kb on - strandat 3502.505 kb on - strandat 3502.505 kb on - strandat 3502.530 kb on + strandat 3502.530 kb on + strandat 3502.530 kb on + strandat 3502.538 kb on - strandat 3502.555 kb on - strandat 3502.595 kb on + strandat 3502.650 kb on + strandat 3502.658 kb on - strandat 3502.658 kb on - strandat 3502.665 kb on + strandat 3502.769 kb on - strandat 3502.770 kb on - strandat 3502.779 kb on - strandat 3502.789 kb on - strandat 3502.790 kb on - strandat 3502.829 kb on - strandat 3502.841 kb on + strandat 3502.849 kb on - strandat 3502.849 kb on - strandat 3502.849 kb on - strandat 3502.849 kb on - strandat 3502.849 kb on - strandat 3502.849 kb on - strandat 3502.849 kb on - strandat 3502.859 kb on - strandat 3502.893 kb on + strandat 3502.933 kb on + strandat 3502.938 kb on + strandat 3502.941 kb on - strandat 3502.941 kb on - strandat 3502.967 kb on + strandat 3502.983 kb on + strandat 3502.986 kb on - strandat 3503.001 kb on - strandat 3503.001 kb on - strandat 3503.114 kb on + strand, within MPMX20_03331at 3503.131 kb on + strand, within MPMX20_03331at 3503.242 kb on - strand, within MPMX20_03331at 3503.267 kb on + strand, within MPMX20_03331at 3503.285 kb on - strand, within MPMX20_03331at 3503.376 kb on + strand, within MPMX20_03331at 3503.384 kb on - strand, within MPMX20_03331at 3503.384 kb on - strand, within MPMX20_03331at 3503.384 kb on - strand, within MPMX20_03331at 3503.407 kb on + strand, within MPMX20_03331at 3503.447 kb on + strand, within MPMX20_03331at 3503.455 kb on - strand, within MPMX20_03331at 3503.455 kb on - strand, within MPMX20_03331at 3503.455 kb on - strand, within MPMX20_03331at 3503.465 kb on + strand, within MPMX20_03331at 3503.465 kb on + strand, within MPMX20_03331at 3503.465 kb on + strand, within MPMX20_03331at 3503.473 kb on - strand, within MPMX20_03331at 3503.473 kb on - strand, within MPMX20_03331at 3503.473 kb on - strand, within MPMX20_03331at 3503.482 kb on + strand, within MPMX20_03331at 3503.482 kb on + strand, within MPMX20_03331at 3503.492 kb on + strand, within MPMX20_03331at 3503.492 kb on + strand, within MPMX20_03331at 3503.500 kb on - strand, within MPMX20_03331at 3503.500 kb on - strand, within MPMX20_03331at 3503.500 kb on - strand, within MPMX20_03331at 3503.500 kb on - strand, within MPMX20_03331at 3503.500 kb on - strand, within MPMX20_03331at 3503.500 kb on - strand, within MPMX20_03331at 3503.524 kb on + strand, within MPMX20_03331at 3503.562 kb on + strand, within MPMX20_03331

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymine (N)
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3,499,928 + MPMX20_03329 0.59 -1.4
3,499,945 + MPMX20_03329 0.60 +0.5
3,499,963 - MPMX20_03329 0.61 -0.8
3,499,973 + MPMX20_03329 0.62 +0.6
3,500,030 + MPMX20_03329 0.64 -0.4
3,500,041 - MPMX20_03329 0.65 -0.7
3,500,059 + MPMX20_03329 0.66 +0.2
3,500,072 + MPMX20_03329 0.67 +0.4
3,500,072 + MPMX20_03329 0.67 -0.4
3,500,072 + MPMX20_03329 0.67 +0.5
3,500,077 + MPMX20_03329 0.67 -0.3
3,500,082 + MPMX20_03329 0.67 -1.7
3,500,163 + MPMX20_03329 0.71 +0.3
3,500,163 + MPMX20_03329 0.71 -0.8
3,500,166 - MPMX20_03329 0.71 -0.3
3,500,224 + MPMX20_03329 0.74 +1.4
3,500,228 - MPMX20_03329 0.74 -0.8
3,500,252 - MPMX20_03329 0.76 +0.1
3,500,300 + MPMX20_03329 0.78 -0.8
3,500,313 + MPMX20_03329 0.79 +0.6
3,500,356 + MPMX20_03329 0.81 +1.5
3,500,375 - MPMX20_03329 0.82 -1.8
3,500,468 - MPMX20_03329 0.87 -0.6
3,500,490 + MPMX20_03329 0.88 +1.4
3,500,496 - MPMX20_03329 0.88 +0.7
3,500,546 - +0.2
3,500,546 - -0.4
3,500,562 + -0.5
3,500,562 + +1.2
3,500,576 + -1.2
3,500,578 + +0.1
3,500,581 + +0.7
3,500,584 - -0.2
3,500,612 - -0.3
3,500,684 - -0.6
3,500,819 - +0.4
3,500,849 + -0.8
3,500,913 + -0.1
3,500,921 - -0.0
3,500,957 + -0.3
3,500,957 + -1.2
3,500,957 + -1.2
3,500,960 - -0.2
3,500,960 - -0.6
3,500,962 + -0.9
3,500,965 + +0.1
3,500,965 - -0.5
3,500,975 + +1.5
3,500,983 - +0.8
3,500,983 - -0.5
3,501,036 + -0.9
3,501,096 + MPMX20_03330 0.12 -2.0
3,501,123 - MPMX20_03330 0.14 -0.4
3,501,166 + MPMX20_03330 0.17 +0.7
3,501,221 - MPMX20_03330 0.20 -0.4
3,501,221 - MPMX20_03330 0.20 +1.1
3,501,238 - MPMX20_03330 0.21 +0.7
3,501,298 + MPMX20_03330 0.24 +1.4
3,501,306 - MPMX20_03330 0.25 -0.2
3,501,306 - MPMX20_03330 0.25 +0.2
3,501,308 - MPMX20_03330 0.25 -0.2
3,501,308 - MPMX20_03330 0.25 -0.5
3,501,308 - MPMX20_03330 0.25 +0.6
3,501,308 - MPMX20_03330 0.25 +1.2
3,501,308 - MPMX20_03330 0.25 +1.0
3,501,313 - MPMX20_03330 0.25 +0.1
3,501,358 - MPMX20_03330 0.28 -1.3
3,501,381 + MPMX20_03330 0.29 +0.6
3,501,381 + MPMX20_03330 0.29 -2.0
3,501,518 + MPMX20_03330 0.37 -0.1
3,501,554 - MPMX20_03330 0.39 -1.5
3,501,556 - MPMX20_03330 0.40 -0.3
3,501,610 + MPMX20_03330 0.43 -0.1
3,501,635 + MPMX20_03330 0.44 -1.3
3,501,658 + MPMX20_03330 0.46 -1.0
3,501,658 + MPMX20_03330 0.46 +0.0
3,501,666 - MPMX20_03330 0.46 +0.0
3,501,762 - MPMX20_03330 0.52 -0.8
3,501,773 + MPMX20_03330 0.52 +0.8
3,501,781 - MPMX20_03330 0.53 +0.3
3,501,829 - MPMX20_03330 0.56 -3.1
3,501,881 + MPMX20_03330 0.59 -1.0
3,501,891 - MPMX20_03330 0.59 +0.5
3,501,902 + MPMX20_03330 0.60 -0.1
3,501,919 + MPMX20_03330 0.61 -1.6
3,502,005 + MPMX20_03330 0.66 +0.3
3,502,043 + MPMX20_03330 0.68 +1.6
3,502,051 - MPMX20_03330 0.69 +0.6
3,502,051 - MPMX20_03330 0.69 +0.6
3,502,051 - MPMX20_03330 0.69 -1.5
3,502,051 - MPMX20_03330 0.69 -2.2
3,502,062 + MPMX20_03330 0.69 +0.5
3,502,066 + MPMX20_03330 0.70 -1.4
3,502,116 - MPMX20_03330 0.73 -1.9
3,502,116 - MPMX20_03330 0.73 -2.2
3,502,117 - MPMX20_03330 0.73 +1.4
3,502,120 + MPMX20_03330 0.73 +1.6
3,502,122 - MPMX20_03330 0.73 +0.4
3,502,142 + MPMX20_03330 0.74 +0.2
3,502,317 + MPMX20_03330 0.84 +0.2
3,502,333 + MPMX20_03330 0.85 +0.6
3,502,387 - MPMX20_03330 0.89 +0.4
3,502,401 - MPMX20_03330 0.89 -0.1
3,502,433 - -1.2
3,502,435 + -0.4
3,502,485 - -1.9
3,502,487 + -0.8
3,502,492 + -0.1
3,502,492 + -0.1
3,502,492 + -0.9
3,502,492 + -0.2
3,502,500 - -1.3
3,502,505 - -0.4
3,502,505 - +2.2
3,502,530 + +0.3
3,502,530 + -0.1
3,502,530 + -1.3
3,502,538 - -0.9
3,502,555 - +1.0
3,502,595 + +0.2
3,502,650 + +0.7
3,502,658 - -0.8
3,502,658 - +1.3
3,502,665 + -0.5
3,502,769 - +0.6
3,502,770 - -2.1
3,502,779 - +0.8
3,502,789 - -3.0
3,502,790 - -1.4
3,502,829 - -0.8
3,502,841 + -0.4
3,502,849 - +2.1
3,502,849 - +0.1
3,502,849 - +2.1
3,502,849 - +0.5
3,502,849 - -0.6
3,502,849 - +1.0
3,502,849 - +0.6
3,502,859 - -0.5
3,502,893 + -0.4
3,502,933 + +0.2
3,502,938 + -1.0
3,502,941 - +0.4
3,502,941 - +0.0
3,502,967 + +1.6
3,502,983 + +2.0
3,502,986 - -0.1
3,503,001 - +1.5
3,503,001 - +0.1
3,503,114 + MPMX20_03331 0.13 -1.2
3,503,131 + MPMX20_03331 0.13 +0.5
3,503,242 - MPMX20_03331 0.17 -0.5
3,503,267 + MPMX20_03331 0.17 -1.5
3,503,285 - MPMX20_03331 0.18 +0.6
3,503,376 + MPMX20_03331 0.21 +0.7
3,503,384 - MPMX20_03331 0.21 -1.2
3,503,384 - MPMX20_03331 0.21 -1.3
3,503,384 - MPMX20_03331 0.21 +1.7
3,503,407 + MPMX20_03331 0.22 -1.5
3,503,447 + MPMX20_03331 0.23 -2.5
3,503,455 - MPMX20_03331 0.24 -0.5
3,503,455 - MPMX20_03331 0.24 +1.2
3,503,455 - MPMX20_03331 0.24 -0.3
3,503,465 + MPMX20_03331 0.24 -0.3
3,503,465 + MPMX20_03331 0.24 +0.3
3,503,465 + MPMX20_03331 0.24 -1.0
3,503,473 - MPMX20_03331 0.24 +0.6
3,503,473 - MPMX20_03331 0.24 -0.7
3,503,473 - MPMX20_03331 0.24 -0.9
3,503,482 + MPMX20_03331 0.24 -0.7
3,503,482 + MPMX20_03331 0.24 -0.2
3,503,492 + MPMX20_03331 0.25 +0.6
3,503,492 + MPMX20_03331 0.25 +1.1
3,503,500 - MPMX20_03331 0.25 -0.6
3,503,500 - MPMX20_03331 0.25 -1.2
3,503,500 - MPMX20_03331 0.25 -1.3
3,503,500 - MPMX20_03331 0.25 -0.4
3,503,500 - MPMX20_03331 0.25 -1.9
3,503,500 - MPMX20_03331 0.25 +0.2
3,503,524 + MPMX20_03331 0.26 +0.8
3,503,562 + MPMX20_03331 0.27 -0.3

Or see this region's nucleotide sequence