Experiment: Thymine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03329 and MPMX20_03330 are separated by 152 nucleotides MPMX20_03330 and MPMX20_03331 are separated by 142 nucleotides
MPMX20_03329: MPMX20_03329 - Ferredoxin--NADP reductase, at 3,498,757 to 3,500,733
_03329
MPMX20_03330: MPMX20_03330 - Nitrate/nitrite sensor protein NarQ, at 3,500,886 to 3,502,580
_03330
MPMX20_03331: MPMX20_03331 - Multidrug efflux pump subunit AcrB, at 3,502,723 to 3,505,836
_03331
Position (kb)
3500
3501
3502
3503 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3499.928 kb on + strand, within MPMX20_03329 at 3499.945 kb on + strand, within MPMX20_03329 at 3499.963 kb on - strand, within MPMX20_03329 at 3499.973 kb on + strand, within MPMX20_03329 at 3500.030 kb on + strand, within MPMX20_03329 at 3500.041 kb on - strand, within MPMX20_03329 at 3500.059 kb on + strand, within MPMX20_03329 at 3500.072 kb on + strand, within MPMX20_03329 at 3500.072 kb on + strand, within MPMX20_03329 at 3500.072 kb on + strand, within MPMX20_03329 at 3500.077 kb on + strand, within MPMX20_03329 at 3500.082 kb on + strand, within MPMX20_03329 at 3500.163 kb on + strand, within MPMX20_03329 at 3500.163 kb on + strand, within MPMX20_03329 at 3500.166 kb on - strand, within MPMX20_03329 at 3500.224 kb on + strand, within MPMX20_03329 at 3500.228 kb on - strand, within MPMX20_03329 at 3500.252 kb on - strand, within MPMX20_03329 at 3500.300 kb on + strand, within MPMX20_03329 at 3500.313 kb on + strand, within MPMX20_03329 at 3500.356 kb on + strand, within MPMX20_03329 at 3500.375 kb on - strand, within MPMX20_03329 at 3500.468 kb on - strand, within MPMX20_03329 at 3500.490 kb on + strand, within MPMX20_03329 at 3500.496 kb on - strand, within MPMX20_03329 at 3500.546 kb on - strand at 3500.546 kb on - strand at 3500.562 kb on + strand at 3500.562 kb on + strand at 3500.576 kb on + strand at 3500.578 kb on + strand at 3500.581 kb on + strand at 3500.584 kb on - strand at 3500.612 kb on - strand at 3500.684 kb on - strand at 3500.819 kb on - strand at 3500.849 kb on + strand at 3500.913 kb on + strand at 3500.921 kb on - strand at 3500.957 kb on + strand at 3500.957 kb on + strand at 3500.957 kb on + strand at 3500.960 kb on - strand at 3500.960 kb on - strand at 3500.962 kb on + strand at 3500.965 kb on + strand at 3500.965 kb on - strand at 3500.975 kb on + strand at 3500.983 kb on - strand at 3500.983 kb on - strand at 3501.036 kb on + strand at 3501.096 kb on + strand, within MPMX20_03330 at 3501.123 kb on - strand, within MPMX20_03330 at 3501.166 kb on + strand, within MPMX20_03330 at 3501.221 kb on - strand, within MPMX20_03330 at 3501.221 kb on - strand, within MPMX20_03330 at 3501.238 kb on - strand, within MPMX20_03330 at 3501.298 kb on + strand, within MPMX20_03330 at 3501.306 kb on - strand, within MPMX20_03330 at 3501.306 kb on - strand, within MPMX20_03330 at 3501.308 kb on - strand, within MPMX20_03330 at 3501.308 kb on - strand, within MPMX20_03330 at 3501.308 kb on - strand, within MPMX20_03330 at 3501.308 kb on - strand, within MPMX20_03330 at 3501.308 kb on - strand, within MPMX20_03330 at 3501.313 kb on - strand, within MPMX20_03330 at 3501.358 kb on - strand, within MPMX20_03330 at 3501.381 kb on + strand, within MPMX20_03330 at 3501.381 kb on + strand, within MPMX20_03330 at 3501.518 kb on + strand, within MPMX20_03330 at 3501.554 kb on - strand, within MPMX20_03330 at 3501.556 kb on - strand, within MPMX20_03330 at 3501.610 kb on + strand, within MPMX20_03330 at 3501.635 kb on + strand, within MPMX20_03330 at 3501.658 kb on + strand, within MPMX20_03330 at 3501.658 kb on + strand, within MPMX20_03330 at 3501.666 kb on - strand, within MPMX20_03330 at 3501.762 kb on - strand, within MPMX20_03330 at 3501.773 kb on + strand, within MPMX20_03330 at 3501.781 kb on - strand, within MPMX20_03330 at 3501.829 kb on - strand, within MPMX20_03330 at 3501.881 kb on + strand, within MPMX20_03330 at 3501.891 kb on - strand, within MPMX20_03330 at 3501.902 kb on + strand, within MPMX20_03330 at 3501.919 kb on + strand, within MPMX20_03330 at 3502.005 kb on + strand, within MPMX20_03330 at 3502.043 kb on + strand, within MPMX20_03330 at 3502.051 kb on - strand, within MPMX20_03330 at 3502.051 kb on - strand, within MPMX20_03330 at 3502.051 kb on - strand, within MPMX20_03330 at 3502.051 kb on - strand, within MPMX20_03330 at 3502.062 kb on + strand, within MPMX20_03330 at 3502.066 kb on + strand, within MPMX20_03330 at 3502.116 kb on - strand, within MPMX20_03330 at 3502.116 kb on - strand, within MPMX20_03330 at 3502.117 kb on - strand, within MPMX20_03330 at 3502.120 kb on + strand, within MPMX20_03330 at 3502.122 kb on - strand, within MPMX20_03330 at 3502.142 kb on + strand, within MPMX20_03330 at 3502.317 kb on + strand, within MPMX20_03330 at 3502.333 kb on + strand, within MPMX20_03330 at 3502.387 kb on - strand, within MPMX20_03330 at 3502.401 kb on - strand, within MPMX20_03330 at 3502.433 kb on - strand at 3502.435 kb on + strand at 3502.485 kb on - strand at 3502.487 kb on + strand at 3502.492 kb on + strand at 3502.492 kb on + strand at 3502.492 kb on + strand at 3502.492 kb on + strand at 3502.500 kb on - strand at 3502.505 kb on - strand at 3502.505 kb on - strand at 3502.530 kb on + strand at 3502.530 kb on + strand at 3502.530 kb on + strand at 3502.538 kb on - strand at 3502.555 kb on - strand at 3502.595 kb on + strand at 3502.650 kb on + strand at 3502.658 kb on - strand at 3502.658 kb on - strand at 3502.665 kb on + strand at 3502.769 kb on - strand at 3502.770 kb on - strand at 3502.779 kb on - strand at 3502.789 kb on - strand at 3502.790 kb on - strand at 3502.829 kb on - strand at 3502.841 kb on + strand at 3502.849 kb on - strand at 3502.849 kb on - strand at 3502.849 kb on - strand at 3502.849 kb on - strand at 3502.849 kb on - strand at 3502.849 kb on - strand at 3502.849 kb on - strand at 3502.859 kb on - strand at 3502.893 kb on + strand at 3502.933 kb on + strand at 3502.938 kb on + strand at 3502.941 kb on - strand at 3502.941 kb on - strand at 3502.967 kb on + strand at 3502.983 kb on + strand at 3502.986 kb on - strand at 3503.001 kb on - strand at 3503.001 kb on - strand at 3503.114 kb on + strand, within MPMX20_03331 at 3503.131 kb on + strand, within MPMX20_03331 at 3503.242 kb on - strand, within MPMX20_03331 at 3503.267 kb on + strand, within MPMX20_03331 at 3503.285 kb on - strand, within MPMX20_03331 at 3503.376 kb on + strand, within MPMX20_03331 at 3503.384 kb on - strand, within MPMX20_03331 at 3503.384 kb on - strand, within MPMX20_03331 at 3503.384 kb on - strand, within MPMX20_03331 at 3503.407 kb on + strand, within MPMX20_03331 at 3503.447 kb on + strand, within MPMX20_03331 at 3503.455 kb on - strand, within MPMX20_03331 at 3503.455 kb on - strand, within MPMX20_03331 at 3503.455 kb on - strand, within MPMX20_03331 at 3503.465 kb on + strand, within MPMX20_03331 at 3503.465 kb on + strand, within MPMX20_03331 at 3503.465 kb on + strand, within MPMX20_03331 at 3503.473 kb on - strand, within MPMX20_03331 at 3503.473 kb on - strand, within MPMX20_03331 at 3503.473 kb on - strand, within MPMX20_03331 at 3503.482 kb on + strand, within MPMX20_03331 at 3503.482 kb on + strand, within MPMX20_03331 at 3503.492 kb on + strand, within MPMX20_03331 at 3503.492 kb on + strand, within MPMX20_03331 at 3503.500 kb on - strand, within MPMX20_03331 at 3503.500 kb on - strand, within MPMX20_03331 at 3503.500 kb on - strand, within MPMX20_03331 at 3503.500 kb on - strand, within MPMX20_03331 at 3503.500 kb on - strand, within MPMX20_03331 at 3503.500 kb on - strand, within MPMX20_03331 at 3503.524 kb on + strand, within MPMX20_03331 at 3503.562 kb on + strand, within MPMX20_03331
Per-strain Table
Position Strand Gene LocusTag Fraction Thymine (N) remove 3,499,928 + MPMX20_03329 0.59 -1.4 3,499,945 + MPMX20_03329 0.60 +0.5 3,499,963 - MPMX20_03329 0.61 -0.8 3,499,973 + MPMX20_03329 0.62 +0.6 3,500,030 + MPMX20_03329 0.64 -0.4 3,500,041 - MPMX20_03329 0.65 -0.7 3,500,059 + MPMX20_03329 0.66 +0.2 3,500,072 + MPMX20_03329 0.67 +0.4 3,500,072 + MPMX20_03329 0.67 -0.4 3,500,072 + MPMX20_03329 0.67 +0.5 3,500,077 + MPMX20_03329 0.67 -0.3 3,500,082 + MPMX20_03329 0.67 -1.7 3,500,163 + MPMX20_03329 0.71 +0.3 3,500,163 + MPMX20_03329 0.71 -0.8 3,500,166 - MPMX20_03329 0.71 -0.3 3,500,224 + MPMX20_03329 0.74 +1.4 3,500,228 - MPMX20_03329 0.74 -0.8 3,500,252 - MPMX20_03329 0.76 +0.1 3,500,300 + MPMX20_03329 0.78 -0.8 3,500,313 + MPMX20_03329 0.79 +0.6 3,500,356 + MPMX20_03329 0.81 +1.5 3,500,375 - MPMX20_03329 0.82 -1.8 3,500,468 - MPMX20_03329 0.87 -0.6 3,500,490 + MPMX20_03329 0.88 +1.4 3,500,496 - MPMX20_03329 0.88 +0.7 3,500,546 - +0.2 3,500,546 - -0.4 3,500,562 + -0.5 3,500,562 + +1.2 3,500,576 + -1.2 3,500,578 + +0.1 3,500,581 + +0.7 3,500,584 - -0.2 3,500,612 - -0.3 3,500,684 - -0.6 3,500,819 - +0.4 3,500,849 + -0.8 3,500,913 + -0.1 3,500,921 - -0.0 3,500,957 + -0.3 3,500,957 + -1.2 3,500,957 + -1.2 3,500,960 - -0.2 3,500,960 - -0.6 3,500,962 + -0.9 3,500,965 + +0.1 3,500,965 - -0.5 3,500,975 + +1.5 3,500,983 - +0.8 3,500,983 - -0.5 3,501,036 + -0.9 3,501,096 + MPMX20_03330 0.12 -2.0 3,501,123 - MPMX20_03330 0.14 -0.4 3,501,166 + MPMX20_03330 0.17 +0.7 3,501,221 - MPMX20_03330 0.20 -0.4 3,501,221 - MPMX20_03330 0.20 +1.1 3,501,238 - MPMX20_03330 0.21 +0.7 3,501,298 + MPMX20_03330 0.24 +1.4 3,501,306 - MPMX20_03330 0.25 -0.2 3,501,306 - MPMX20_03330 0.25 +0.2 3,501,308 - MPMX20_03330 0.25 -0.2 3,501,308 - MPMX20_03330 0.25 -0.5 3,501,308 - MPMX20_03330 0.25 +0.6 3,501,308 - MPMX20_03330 0.25 +1.2 3,501,308 - MPMX20_03330 0.25 +1.0 3,501,313 - MPMX20_03330 0.25 +0.1 3,501,358 - MPMX20_03330 0.28 -1.3 3,501,381 + MPMX20_03330 0.29 +0.6 3,501,381 + MPMX20_03330 0.29 -2.0 3,501,518 + MPMX20_03330 0.37 -0.1 3,501,554 - MPMX20_03330 0.39 -1.5 3,501,556 - MPMX20_03330 0.40 -0.3 3,501,610 + MPMX20_03330 0.43 -0.1 3,501,635 + MPMX20_03330 0.44 -1.3 3,501,658 + MPMX20_03330 0.46 -1.0 3,501,658 + MPMX20_03330 0.46 +0.0 3,501,666 - MPMX20_03330 0.46 +0.0 3,501,762 - MPMX20_03330 0.52 -0.8 3,501,773 + MPMX20_03330 0.52 +0.8 3,501,781 - MPMX20_03330 0.53 +0.3 3,501,829 - MPMX20_03330 0.56 -3.1 3,501,881 + MPMX20_03330 0.59 -1.0 3,501,891 - MPMX20_03330 0.59 +0.5 3,501,902 + MPMX20_03330 0.60 -0.1 3,501,919 + MPMX20_03330 0.61 -1.6 3,502,005 + MPMX20_03330 0.66 +0.3 3,502,043 + MPMX20_03330 0.68 +1.6 3,502,051 - MPMX20_03330 0.69 +0.6 3,502,051 - MPMX20_03330 0.69 +0.6 3,502,051 - MPMX20_03330 0.69 -1.5 3,502,051 - MPMX20_03330 0.69 -2.2 3,502,062 + MPMX20_03330 0.69 +0.5 3,502,066 + MPMX20_03330 0.70 -1.4 3,502,116 - MPMX20_03330 0.73 -1.9 3,502,116 - MPMX20_03330 0.73 -2.2 3,502,117 - MPMX20_03330 0.73 +1.4 3,502,120 + MPMX20_03330 0.73 +1.6 3,502,122 - MPMX20_03330 0.73 +0.4 3,502,142 + MPMX20_03330 0.74 +0.2 3,502,317 + MPMX20_03330 0.84 +0.2 3,502,333 + MPMX20_03330 0.85 +0.6 3,502,387 - MPMX20_03330 0.89 +0.4 3,502,401 - MPMX20_03330 0.89 -0.1 3,502,433 - -1.2 3,502,435 + -0.4 3,502,485 - -1.9 3,502,487 + -0.8 3,502,492 + -0.1 3,502,492 + -0.1 3,502,492 + -0.9 3,502,492 + -0.2 3,502,500 - -1.3 3,502,505 - -0.4 3,502,505 - +2.2 3,502,530 + +0.3 3,502,530 + -0.1 3,502,530 + -1.3 3,502,538 - -0.9 3,502,555 - +1.0 3,502,595 + +0.2 3,502,650 + +0.7 3,502,658 - -0.8 3,502,658 - +1.3 3,502,665 + -0.5 3,502,769 - +0.6 3,502,770 - -2.1 3,502,779 - +0.8 3,502,789 - -3.0 3,502,790 - -1.4 3,502,829 - -0.8 3,502,841 + -0.4 3,502,849 - +2.1 3,502,849 - +0.1 3,502,849 - +2.1 3,502,849 - +0.5 3,502,849 - -0.6 3,502,849 - +1.0 3,502,849 - +0.6 3,502,859 - -0.5 3,502,893 + -0.4 3,502,933 + +0.2 3,502,938 + -1.0 3,502,941 - +0.4 3,502,941 - +0.0 3,502,967 + +1.6 3,502,983 + +2.0 3,502,986 - -0.1 3,503,001 - +1.5 3,503,001 - +0.1 3,503,114 + MPMX20_03331 0.13 -1.2 3,503,131 + MPMX20_03331 0.13 +0.5 3,503,242 - MPMX20_03331 0.17 -0.5 3,503,267 + MPMX20_03331 0.17 -1.5 3,503,285 - MPMX20_03331 0.18 +0.6 3,503,376 + MPMX20_03331 0.21 +0.7 3,503,384 - MPMX20_03331 0.21 -1.2 3,503,384 - MPMX20_03331 0.21 -1.3 3,503,384 - MPMX20_03331 0.21 +1.7 3,503,407 + MPMX20_03331 0.22 -1.5 3,503,447 + MPMX20_03331 0.23 -2.5 3,503,455 - MPMX20_03331 0.24 -0.5 3,503,455 - MPMX20_03331 0.24 +1.2 3,503,455 - MPMX20_03331 0.24 -0.3 3,503,465 + MPMX20_03331 0.24 -0.3 3,503,465 + MPMX20_03331 0.24 +0.3 3,503,465 + MPMX20_03331 0.24 -1.0 3,503,473 - MPMX20_03331 0.24 +0.6 3,503,473 - MPMX20_03331 0.24 -0.7 3,503,473 - MPMX20_03331 0.24 -0.9 3,503,482 + MPMX20_03331 0.24 -0.7 3,503,482 + MPMX20_03331 0.24 -0.2 3,503,492 + MPMX20_03331 0.25 +0.6 3,503,492 + MPMX20_03331 0.25 +1.1 3,503,500 - MPMX20_03331 0.25 -0.6 3,503,500 - MPMX20_03331 0.25 -1.2 3,503,500 - MPMX20_03331 0.25 -1.3 3,503,500 - MPMX20_03331 0.25 -0.4 3,503,500 - MPMX20_03331 0.25 -1.9 3,503,500 - MPMX20_03331 0.25 +0.2 3,503,524 + MPMX20_03331 0.26 +0.8 3,503,562 + MPMX20_03331 0.27 -0.3
Or see this region's nucleotide sequence