Experiment: Thymine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02621 and MPMX20_02622 are separated by 11 nucleotides MPMX20_02622 and MPMX20_02623 are separated by 9 nucleotides MPMX20_02623 and MPMX20_02624 are separated by 2 nucleotides
MPMX20_02621: MPMX20_02621 - Nitric oxide reductase FlRd-NAD(+) reductase, at 2,762,680 to 2,766,666
_02621
MPMX20_02622: MPMX20_02622 - Bicarbonate transport ATP-binding protein CmpC, at 2,766,678 to 2,767,466
_02622
MPMX20_02623: MPMX20_02623 - Bicarbonate transport system permease protein CmpB, at 2,767,476 to 2,768,357
_02623
MPMX20_02624: MPMX20_02624 - Nitrate/nitrite binding protein NrtA, at 2,768,360 to 2,769,607
_02624
Position (kb)
2766
2767
2768 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2765.680 kb on - strand, within MPMX20_02621 at 2765.708 kb on - strand, within MPMX20_02621 at 2765.711 kb on + strand, within MPMX20_02621 at 2765.716 kb on + strand, within MPMX20_02621 at 2765.719 kb on - strand, within MPMX20_02621 at 2765.721 kb on + strand, within MPMX20_02621 at 2765.721 kb on + strand, within MPMX20_02621 at 2765.721 kb on + strand, within MPMX20_02621 at 2765.729 kb on - strand, within MPMX20_02621 at 2765.729 kb on - strand, within MPMX20_02621 at 2765.729 kb on - strand, within MPMX20_02621 at 2765.874 kb on - strand, within MPMX20_02621 at 2765.899 kb on + strand, within MPMX20_02621 at 2765.914 kb on + strand, within MPMX20_02621 at 2765.919 kb on + strand, within MPMX20_02621 at 2765.919 kb on + strand, within MPMX20_02621 at 2766.029 kb on + strand, within MPMX20_02621 at 2766.062 kb on + strand, within MPMX20_02621 at 2766.112 kb on - strand, within MPMX20_02621 at 2766.150 kb on + strand, within MPMX20_02621 at 2766.193 kb on + strand, within MPMX20_02621 at 2766.220 kb on + strand, within MPMX20_02621 at 2766.225 kb on + strand, within MPMX20_02621 at 2766.443 kb on + strand at 2766.452 kb on + strand at 2766.460 kb on - strand at 2766.517 kb on + strand at 2766.530 kb on - strand at 2766.596 kb on + strand at 2766.683 kb on - strand at 2766.683 kb on - strand at 2766.752 kb on - strand at 2766.752 kb on - strand at 2766.776 kb on + strand, within MPMX20_02622 at 2766.793 kb on - strand, within MPMX20_02622 at 2766.862 kb on + strand, within MPMX20_02622 at 2766.908 kb on - strand, within MPMX20_02622 at 2766.925 kb on + strand, within MPMX20_02622 at 2766.933 kb on - strand, within MPMX20_02622 at 2766.960 kb on - strand, within MPMX20_02622 at 2767.073 kb on + strand, within MPMX20_02622 at 2767.081 kb on - strand, within MPMX20_02622 at 2767.082 kb on - strand, within MPMX20_02622 at 2767.114 kb on - strand, within MPMX20_02622 at 2767.167 kb on - strand, within MPMX20_02622 at 2767.231 kb on - strand, within MPMX20_02622 at 2767.237 kb on + strand, within MPMX20_02622 at 2767.241 kb on - strand, within MPMX20_02622 at 2767.287 kb on - strand, within MPMX20_02622 at 2767.515 kb on - strand at 2767.517 kb on + strand at 2767.519 kb on - strand at 2767.544 kb on + strand at 2767.772 kb on + strand, within MPMX20_02623 at 2767.772 kb on + strand, within MPMX20_02623 at 2767.779 kb on - strand, within MPMX20_02623 at 2767.779 kb on - strand, within MPMX20_02623 at 2767.780 kb on - strand, within MPMX20_02623 at 2767.790 kb on + strand, within MPMX20_02623 at 2767.798 kb on - strand, within MPMX20_02623 at 2767.802 kb on + strand, within MPMX20_02623 at 2767.805 kb on - strand, within MPMX20_02623 at 2767.805 kb on - strand, within MPMX20_02623 at 2767.811 kb on - strand, within MPMX20_02623 at 2767.831 kb on - strand, within MPMX20_02623 at 2767.831 kb on - strand, within MPMX20_02623 at 2767.923 kb on - strand, within MPMX20_02623 at 2767.924 kb on + strand, within MPMX20_02623 at 2767.976 kb on - strand, within MPMX20_02623 at 2768.018 kb on + strand, within MPMX20_02623 at 2768.110 kb on - strand, within MPMX20_02623 at 2768.112 kb on + strand, within MPMX20_02623 at 2768.203 kb on + strand, within MPMX20_02623 at 2768.267 kb on - strand, within MPMX20_02623 at 2768.351 kb on - strand at 2768.367 kb on + strand at 2768.367 kb on + strand at 2768.417 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thymine (N) remove 2,765,680 - MPMX20_02621 0.75 -1.2 2,765,708 - MPMX20_02621 0.76 -0.1 2,765,711 + MPMX20_02621 0.76 -2.7 2,765,716 + MPMX20_02621 0.76 +1.6 2,765,719 - MPMX20_02621 0.76 +1.2 2,765,721 + MPMX20_02621 0.76 -0.3 2,765,721 + MPMX20_02621 0.76 -0.4 2,765,721 + MPMX20_02621 0.76 +0.7 2,765,729 - MPMX20_02621 0.76 -2.2 2,765,729 - MPMX20_02621 0.76 -2.4 2,765,729 - MPMX20_02621 0.76 -1.7 2,765,874 - MPMX20_02621 0.80 -2.8 2,765,899 + MPMX20_02621 0.81 -0.5 2,765,914 + MPMX20_02621 0.81 +0.6 2,765,919 + MPMX20_02621 0.81 -0.1 2,765,919 + MPMX20_02621 0.81 -2.4 2,766,029 + MPMX20_02621 0.84 -0.9 2,766,062 + MPMX20_02621 0.85 -0.1 2,766,112 - MPMX20_02621 0.86 +0.7 2,766,150 + MPMX20_02621 0.87 -1.9 2,766,193 + MPMX20_02621 0.88 -1.5 2,766,220 + MPMX20_02621 0.89 +0.4 2,766,225 + MPMX20_02621 0.89 -1.3 2,766,443 + -2.0 2,766,452 + +0.2 2,766,460 - -1.3 2,766,517 + -1.2 2,766,530 - -0.1 2,766,596 + +0.7 2,766,683 - -0.5 2,766,683 - -0.8 2,766,752 - +1.3 2,766,752 - +2.3 2,766,776 + MPMX20_02622 0.12 +0.3 2,766,793 - MPMX20_02622 0.15 -0.9 2,766,862 + MPMX20_02622 0.23 +2.1 2,766,908 - MPMX20_02622 0.29 +0.6 2,766,925 + MPMX20_02622 0.31 -2.1 2,766,933 - MPMX20_02622 0.32 +1.6 2,766,960 - MPMX20_02622 0.36 +0.2 2,767,073 + MPMX20_02622 0.50 +2.0 2,767,081 - MPMX20_02622 0.51 +1.3 2,767,082 - MPMX20_02622 0.51 +1.3 2,767,114 - MPMX20_02622 0.55 +0.9 2,767,167 - MPMX20_02622 0.62 +0.6 2,767,231 - MPMX20_02622 0.70 +2.2 2,767,237 + MPMX20_02622 0.71 -0.3 2,767,241 - MPMX20_02622 0.71 +0.5 2,767,287 - MPMX20_02622 0.77 -1.6 2,767,515 - +2.9 2,767,517 + +1.9 2,767,519 - +1.5 2,767,544 + +0.8 2,767,772 + MPMX20_02623 0.34 +1.7 2,767,772 + MPMX20_02623 0.34 -1.1 2,767,779 - MPMX20_02623 0.34 +0.5 2,767,779 - MPMX20_02623 0.34 +1.1 2,767,780 - MPMX20_02623 0.34 +0.2 2,767,790 + MPMX20_02623 0.36 +1.4 2,767,798 - MPMX20_02623 0.37 -0.0 2,767,802 + MPMX20_02623 0.37 +0.2 2,767,805 - MPMX20_02623 0.37 -0.3 2,767,805 - MPMX20_02623 0.37 +0.2 2,767,811 - MPMX20_02623 0.38 +1.1 2,767,831 - MPMX20_02623 0.40 +0.1 2,767,831 - MPMX20_02623 0.40 -0.6 2,767,923 - MPMX20_02623 0.51 -0.6 2,767,924 + MPMX20_02623 0.51 +0.8 2,767,976 - MPMX20_02623 0.57 +1.3 2,768,018 + MPMX20_02623 0.61 +1.8 2,768,110 - MPMX20_02623 0.72 -0.1 2,768,112 + MPMX20_02623 0.72 +1.0 2,768,203 + MPMX20_02623 0.82 +1.7 2,768,267 - MPMX20_02623 0.90 +0.0 2,768,351 - +0.8 2,768,367 + +1.6 2,768,367 + -0.9 2,768,417 + +1.0
Or see this region's nucleotide sequence