Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01696

Experiment: Thymine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01694 and MPMX20_01695 are separated by 9 nucleotidesMPMX20_01695 and MPMX20_01696 are separated by 9 nucleotidesMPMX20_01696 and MPMX20_01697 are separated by 7 nucleotidesMPMX20_01697 and MPMX20_01698 are separated by 11 nucleotides MPMX20_01694: MPMX20_01694 - FMN reductase (NADH) RutF, at 1,791,761 to 1,792,255 _01694 MPMX20_01695: MPMX20_01695 - putative malonic semialdehyde reductase RutE, at 1,792,265 to 1,792,855 _01695 MPMX20_01696: MPMX20_01696 - Putative aminoacrylate hydrolase RutD, at 1,792,865 to 1,793,665 _01696 MPMX20_01697: MPMX20_01697 - Putative aminoacrylate peracid reductase RutC, at 1,793,673 to 1,794,059 _01697 MPMX20_01698: MPMX20_01698 - Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB, at 1,794,071 to 1,794,760 _01698 Position (kb) 1792 1793 1794Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1791.871 kb on + strand, within MPMX20_01694at 1791.879 kb on + strand, within MPMX20_01694at 1791.879 kb on - strand, within MPMX20_01694at 1791.884 kb on - strand, within MPMX20_01694at 1791.891 kb on - strand, within MPMX20_01694at 1791.914 kb on - strand, within MPMX20_01694at 1791.982 kb on - strand, within MPMX20_01694at 1792.039 kb on - strand, within MPMX20_01694at 1792.102 kb on - strand, within MPMX20_01694at 1792.131 kb on + strand, within MPMX20_01694at 1792.131 kb on + strand, within MPMX20_01694at 1792.214 kb on + strandat 1792.214 kb on + strandat 1792.214 kb on + strandat 1792.222 kb on - strandat 1792.263 kb on + strandat 1792.263 kb on + strandat 1792.271 kb on - strandat 1792.522 kb on + strand, within MPMX20_01695at 1792.527 kb on + strand, within MPMX20_01695at 1792.600 kb on - strand, within MPMX20_01695at 1792.680 kb on - strand, within MPMX20_01695at 1792.697 kb on - strand, within MPMX20_01695at 1792.712 kb on - strand, within MPMX20_01695at 1792.750 kb on - strand, within MPMX20_01695at 1792.784 kb on - strand, within MPMX20_01695at 1792.853 kb on + strandat 1792.853 kb on + strandat 1792.861 kb on - strandat 1792.876 kb on + strandat 1792.876 kb on + strandat 1792.884 kb on - strandat 1792.884 kb on - strandat 1792.898 kb on + strandat 1792.960 kb on - strand, within MPMX20_01696at 1792.986 kb on - strand, within MPMX20_01696at 1793.011 kb on + strand, within MPMX20_01696at 1793.013 kb on + strand, within MPMX20_01696at 1793.019 kb on - strand, within MPMX20_01696at 1793.023 kb on + strand, within MPMX20_01696at 1793.023 kb on + strand, within MPMX20_01696at 1793.028 kb on + strand, within MPMX20_01696at 1793.067 kb on - strand, within MPMX20_01696at 1793.134 kb on - strand, within MPMX20_01696at 1793.149 kb on + strand, within MPMX20_01696at 1793.169 kb on - strand, within MPMX20_01696at 1793.170 kb on - strand, within MPMX20_01696at 1793.244 kb on + strand, within MPMX20_01696at 1793.244 kb on + strand, within MPMX20_01696at 1793.246 kb on - strand, within MPMX20_01696at 1793.252 kb on - strand, within MPMX20_01696at 1793.252 kb on - strand, within MPMX20_01696at 1793.252 kb on - strand, within MPMX20_01696at 1793.257 kb on - strand, within MPMX20_01696at 1793.295 kb on - strand, within MPMX20_01696at 1793.311 kb on + strand, within MPMX20_01696at 1793.342 kb on - strand, within MPMX20_01696at 1793.347 kb on - strand, within MPMX20_01696at 1793.409 kb on - strand, within MPMX20_01696at 1793.420 kb on + strand, within MPMX20_01696at 1793.527 kb on + strand, within MPMX20_01696at 1793.527 kb on + strand, within MPMX20_01696at 1793.527 kb on + strand, within MPMX20_01696at 1793.535 kb on - strand, within MPMX20_01696at 1793.535 kb on - strand, within MPMX20_01696at 1793.541 kb on + strand, within MPMX20_01696at 1793.549 kb on + strand, within MPMX20_01696at 1793.614 kb on + strandat 1793.736 kb on - strand, within MPMX20_01697at 1793.740 kb on + strand, within MPMX20_01697at 1793.745 kb on + strand, within MPMX20_01697at 1793.764 kb on + strand, within MPMX20_01697at 1793.764 kb on + strand, within MPMX20_01697at 1793.779 kb on + strand, within MPMX20_01697at 1794.020 kb on + strand, within MPMX20_01697at 1794.091 kb on - strandat 1794.103 kb on - strandat 1794.123 kb on + strandat 1794.155 kb on + strand, within MPMX20_01698at 1794.155 kb on + strand, within MPMX20_01698at 1794.158 kb on - strand, within MPMX20_01698at 1794.183 kb on + strand, within MPMX20_01698at 1794.189 kb on + strand, within MPMX20_01698at 1794.258 kb on - strand, within MPMX20_01698at 1794.368 kb on - strand, within MPMX20_01698

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymine (N)
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1,791,871 + MPMX20_01694 0.22 -2.6
1,791,879 + MPMX20_01694 0.24 -2.8
1,791,879 - MPMX20_01694 0.24 -3.5
1,791,884 - MPMX20_01694 0.25 -3.1
1,791,891 - MPMX20_01694 0.26 -1.9
1,791,914 - MPMX20_01694 0.31 -4.2
1,791,982 - MPMX20_01694 0.45 -2.3
1,792,039 - MPMX20_01694 0.56 -2.0
1,792,102 - MPMX20_01694 0.69 -3.3
1,792,131 + MPMX20_01694 0.75 -2.8
1,792,131 + MPMX20_01694 0.75 +0.8
1,792,214 + -4.6
1,792,214 + -3.4
1,792,214 + -1.4
1,792,222 - -2.0
1,792,263 + -2.6
1,792,263 + -1.8
1,792,271 - -3.5
1,792,522 + MPMX20_01695 0.43 -1.4
1,792,527 + MPMX20_01695 0.44 -1.1
1,792,600 - MPMX20_01695 0.57 -1.6
1,792,680 - MPMX20_01695 0.70 -2.1
1,792,697 - MPMX20_01695 0.73 -1.8
1,792,712 - MPMX20_01695 0.76 -2.4
1,792,750 - MPMX20_01695 0.82 -1.1
1,792,784 - MPMX20_01695 0.88 -3.3
1,792,853 + -2.7
1,792,853 + -2.6
1,792,861 - -4.4
1,792,876 + -3.3
1,792,876 + -4.4
1,792,884 - -1.2
1,792,884 - -2.4
1,792,898 + -2.8
1,792,960 - MPMX20_01696 0.12 -2.8
1,792,986 - MPMX20_01696 0.15 -0.8
1,793,011 + MPMX20_01696 0.18 -2.1
1,793,013 + MPMX20_01696 0.18 -3.4
1,793,019 - MPMX20_01696 0.19 -3.7
1,793,023 + MPMX20_01696 0.20 -0.8
1,793,023 + MPMX20_01696 0.20 -3.1
1,793,028 + MPMX20_01696 0.20 -2.7
1,793,067 - MPMX20_01696 0.25 +0.2
1,793,134 - MPMX20_01696 0.34 -2.7
1,793,149 + MPMX20_01696 0.35 -3.0
1,793,169 - MPMX20_01696 0.38 -0.5
1,793,170 - MPMX20_01696 0.38 -3.0
1,793,244 + MPMX20_01696 0.47 -1.6
1,793,244 + MPMX20_01696 0.47 -3.5
1,793,246 - MPMX20_01696 0.48 -1.4
1,793,252 - MPMX20_01696 0.48 -3.3
1,793,252 - MPMX20_01696 0.48 -3.7
1,793,252 - MPMX20_01696 0.48 -1.0
1,793,257 - MPMX20_01696 0.49 +0.8
1,793,295 - MPMX20_01696 0.54 -2.8
1,793,311 + MPMX20_01696 0.56 +0.8
1,793,342 - MPMX20_01696 0.60 -3.6
1,793,347 - MPMX20_01696 0.60 -0.2
1,793,409 - MPMX20_01696 0.68 -2.6
1,793,420 + MPMX20_01696 0.69 -1.0
1,793,527 + MPMX20_01696 0.83 -3.8
1,793,527 + MPMX20_01696 0.83 -3.2
1,793,527 + MPMX20_01696 0.83 -2.6
1,793,535 - MPMX20_01696 0.84 -3.9
1,793,535 - MPMX20_01696 0.84 -1.8
1,793,541 + MPMX20_01696 0.84 -4.4
1,793,549 + MPMX20_01696 0.85 -1.9
1,793,614 + -0.8
1,793,736 - MPMX20_01697 0.16 -4.5
1,793,740 + MPMX20_01697 0.17 -4.3
1,793,745 + MPMX20_01697 0.19 -1.5
1,793,764 + MPMX20_01697 0.24 -2.4
1,793,764 + MPMX20_01697 0.24 +0.2
1,793,779 + MPMX20_01697 0.27 -3.6
1,794,020 + MPMX20_01697 0.90 -1.5
1,794,091 - -3.9
1,794,103 - -3.3
1,794,123 + -4.0
1,794,155 + MPMX20_01698 0.12 -2.2
1,794,155 + MPMX20_01698 0.12 -3.4
1,794,158 - MPMX20_01698 0.13 -2.6
1,794,183 + MPMX20_01698 0.16 -2.9
1,794,189 + MPMX20_01698 0.17 -0.7
1,794,258 - MPMX20_01698 0.27 -2.4
1,794,368 - MPMX20_01698 0.43 -4.3

Or see this region's nucleotide sequence