Experiment: Thymine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01694 and MPMX20_01695 are separated by 9 nucleotides MPMX20_01695 and MPMX20_01696 are separated by 9 nucleotides MPMX20_01696 and MPMX20_01697 are separated by 7 nucleotides MPMX20_01697 and MPMX20_01698 are separated by 11 nucleotides
MPMX20_01694: MPMX20_01694 - FMN reductase (NADH) RutF, at 1,791,761 to 1,792,255
_01694
MPMX20_01695: MPMX20_01695 - putative malonic semialdehyde reductase RutE, at 1,792,265 to 1,792,855
_01695
MPMX20_01696: MPMX20_01696 - Putative aminoacrylate hydrolase RutD, at 1,792,865 to 1,793,665
_01696
MPMX20_01697: MPMX20_01697 - Putative aminoacrylate peracid reductase RutC, at 1,793,673 to 1,794,059
_01697
MPMX20_01698: MPMX20_01698 - Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB, at 1,794,071 to 1,794,760
_01698
Position (kb)
1792
1793
1794 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1791.871 kb on + strand, within MPMX20_01694 at 1791.879 kb on + strand, within MPMX20_01694 at 1791.879 kb on - strand, within MPMX20_01694 at 1791.884 kb on - strand, within MPMX20_01694 at 1791.891 kb on - strand, within MPMX20_01694 at 1791.914 kb on - strand, within MPMX20_01694 at 1791.982 kb on - strand, within MPMX20_01694 at 1792.039 kb on - strand, within MPMX20_01694 at 1792.102 kb on - strand, within MPMX20_01694 at 1792.131 kb on + strand, within MPMX20_01694 at 1792.131 kb on + strand, within MPMX20_01694 at 1792.214 kb on + strand at 1792.214 kb on + strand at 1792.214 kb on + strand at 1792.222 kb on - strand at 1792.263 kb on + strand at 1792.263 kb on + strand at 1792.271 kb on - strand at 1792.522 kb on + strand, within MPMX20_01695 at 1792.527 kb on + strand, within MPMX20_01695 at 1792.600 kb on - strand, within MPMX20_01695 at 1792.680 kb on - strand, within MPMX20_01695 at 1792.697 kb on - strand, within MPMX20_01695 at 1792.712 kb on - strand, within MPMX20_01695 at 1792.750 kb on - strand, within MPMX20_01695 at 1792.784 kb on - strand, within MPMX20_01695 at 1792.853 kb on + strand at 1792.853 kb on + strand at 1792.861 kb on - strand at 1792.876 kb on + strand at 1792.876 kb on + strand at 1792.884 kb on - strand at 1792.884 kb on - strand at 1792.898 kb on + strand at 1792.960 kb on - strand, within MPMX20_01696 at 1792.986 kb on - strand, within MPMX20_01696 at 1793.011 kb on + strand, within MPMX20_01696 at 1793.013 kb on + strand, within MPMX20_01696 at 1793.019 kb on - strand, within MPMX20_01696 at 1793.023 kb on + strand, within MPMX20_01696 at 1793.023 kb on + strand, within MPMX20_01696 at 1793.028 kb on + strand, within MPMX20_01696 at 1793.067 kb on - strand, within MPMX20_01696 at 1793.134 kb on - strand, within MPMX20_01696 at 1793.149 kb on + strand, within MPMX20_01696 at 1793.169 kb on - strand, within MPMX20_01696 at 1793.170 kb on - strand, within MPMX20_01696 at 1793.244 kb on + strand, within MPMX20_01696 at 1793.244 kb on + strand, within MPMX20_01696 at 1793.246 kb on - strand, within MPMX20_01696 at 1793.252 kb on - strand, within MPMX20_01696 at 1793.252 kb on - strand, within MPMX20_01696 at 1793.252 kb on - strand, within MPMX20_01696 at 1793.257 kb on - strand, within MPMX20_01696 at 1793.295 kb on - strand, within MPMX20_01696 at 1793.311 kb on + strand, within MPMX20_01696 at 1793.342 kb on - strand, within MPMX20_01696 at 1793.347 kb on - strand, within MPMX20_01696 at 1793.409 kb on - strand, within MPMX20_01696 at 1793.420 kb on + strand, within MPMX20_01696 at 1793.527 kb on + strand, within MPMX20_01696 at 1793.527 kb on + strand, within MPMX20_01696 at 1793.527 kb on + strand, within MPMX20_01696 at 1793.535 kb on - strand, within MPMX20_01696 at 1793.535 kb on - strand, within MPMX20_01696 at 1793.541 kb on + strand, within MPMX20_01696 at 1793.549 kb on + strand, within MPMX20_01696 at 1793.614 kb on + strand at 1793.736 kb on - strand, within MPMX20_01697 at 1793.740 kb on + strand, within MPMX20_01697 at 1793.745 kb on + strand, within MPMX20_01697 at 1793.764 kb on + strand, within MPMX20_01697 at 1793.764 kb on + strand, within MPMX20_01697 at 1793.779 kb on + strand, within MPMX20_01697 at 1794.020 kb on + strand, within MPMX20_01697 at 1794.091 kb on - strand at 1794.103 kb on - strand at 1794.123 kb on + strand at 1794.155 kb on + strand, within MPMX20_01698 at 1794.155 kb on + strand, within MPMX20_01698 at 1794.158 kb on - strand, within MPMX20_01698 at 1794.183 kb on + strand, within MPMX20_01698 at 1794.189 kb on + strand, within MPMX20_01698 at 1794.258 kb on - strand, within MPMX20_01698 at 1794.368 kb on - strand, within MPMX20_01698
Per-strain Table
Position Strand Gene LocusTag Fraction Thymine (N) remove 1,791,871 + MPMX20_01694 0.22 -2.6 1,791,879 + MPMX20_01694 0.24 -2.8 1,791,879 - MPMX20_01694 0.24 -3.5 1,791,884 - MPMX20_01694 0.25 -3.1 1,791,891 - MPMX20_01694 0.26 -1.9 1,791,914 - MPMX20_01694 0.31 -4.2 1,791,982 - MPMX20_01694 0.45 -2.3 1,792,039 - MPMX20_01694 0.56 -2.0 1,792,102 - MPMX20_01694 0.69 -3.3 1,792,131 + MPMX20_01694 0.75 -2.8 1,792,131 + MPMX20_01694 0.75 +0.8 1,792,214 + -4.6 1,792,214 + -3.4 1,792,214 + -1.4 1,792,222 - -2.0 1,792,263 + -2.6 1,792,263 + -1.8 1,792,271 - -3.5 1,792,522 + MPMX20_01695 0.43 -1.4 1,792,527 + MPMX20_01695 0.44 -1.1 1,792,600 - MPMX20_01695 0.57 -1.6 1,792,680 - MPMX20_01695 0.70 -2.1 1,792,697 - MPMX20_01695 0.73 -1.8 1,792,712 - MPMX20_01695 0.76 -2.4 1,792,750 - MPMX20_01695 0.82 -1.1 1,792,784 - MPMX20_01695 0.88 -3.3 1,792,853 + -2.7 1,792,853 + -2.6 1,792,861 - -4.4 1,792,876 + -3.3 1,792,876 + -4.4 1,792,884 - -1.2 1,792,884 - -2.4 1,792,898 + -2.8 1,792,960 - MPMX20_01696 0.12 -2.8 1,792,986 - MPMX20_01696 0.15 -0.8 1,793,011 + MPMX20_01696 0.18 -2.1 1,793,013 + MPMX20_01696 0.18 -3.4 1,793,019 - MPMX20_01696 0.19 -3.7 1,793,023 + MPMX20_01696 0.20 -0.8 1,793,023 + MPMX20_01696 0.20 -3.1 1,793,028 + MPMX20_01696 0.20 -2.7 1,793,067 - MPMX20_01696 0.25 +0.2 1,793,134 - MPMX20_01696 0.34 -2.7 1,793,149 + MPMX20_01696 0.35 -3.0 1,793,169 - MPMX20_01696 0.38 -0.5 1,793,170 - MPMX20_01696 0.38 -3.0 1,793,244 + MPMX20_01696 0.47 -1.6 1,793,244 + MPMX20_01696 0.47 -3.5 1,793,246 - MPMX20_01696 0.48 -1.4 1,793,252 - MPMX20_01696 0.48 -3.3 1,793,252 - MPMX20_01696 0.48 -3.7 1,793,252 - MPMX20_01696 0.48 -1.0 1,793,257 - MPMX20_01696 0.49 +0.8 1,793,295 - MPMX20_01696 0.54 -2.8 1,793,311 + MPMX20_01696 0.56 +0.8 1,793,342 - MPMX20_01696 0.60 -3.6 1,793,347 - MPMX20_01696 0.60 -0.2 1,793,409 - MPMX20_01696 0.68 -2.6 1,793,420 + MPMX20_01696 0.69 -1.0 1,793,527 + MPMX20_01696 0.83 -3.8 1,793,527 + MPMX20_01696 0.83 -3.2 1,793,527 + MPMX20_01696 0.83 -2.6 1,793,535 - MPMX20_01696 0.84 -3.9 1,793,535 - MPMX20_01696 0.84 -1.8 1,793,541 + MPMX20_01696 0.84 -4.4 1,793,549 + MPMX20_01696 0.85 -1.9 1,793,614 + -0.8 1,793,736 - MPMX20_01697 0.16 -4.5 1,793,740 + MPMX20_01697 0.17 -4.3 1,793,745 + MPMX20_01697 0.19 -1.5 1,793,764 + MPMX20_01697 0.24 -2.4 1,793,764 + MPMX20_01697 0.24 +0.2 1,793,779 + MPMX20_01697 0.27 -3.6 1,794,020 + MPMX20_01697 0.90 -1.5 1,794,091 - -3.9 1,794,103 - -3.3 1,794,123 + -4.0 1,794,155 + MPMX20_01698 0.12 -2.2 1,794,155 + MPMX20_01698 0.12 -3.4 1,794,158 - MPMX20_01698 0.13 -2.6 1,794,183 + MPMX20_01698 0.16 -2.9 1,794,189 + MPMX20_01698 0.17 -0.7 1,794,258 - MPMX20_01698 0.27 -2.4 1,794,368 - MPMX20_01698 0.43 -4.3
Or see this region's nucleotide sequence