Strain Fitness in Pantoea sp. MT58 around IAI47_15380

Experiment: Ying_all64 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 1
3,239,259	-		IAI47_15375	0.72	-0.1
3,240,017	+				+1.9
3,240,017	+				-0.3
3,240,035	+				+0.8
3,240,108	+				-0.5
3,240,109	-				-2.1
3,240,705	+				+0.7
3,240,705	+				-0.4
3,240,707	+				-0.7
3,240,707	+				-1.1
3,240,707	+				+0.9
3,240,708	-				-0.1
3,240,746	+				-0.0
3,240,746	+				+0.4
3,240,746	+				-1.1
3,240,781	+				+0.9
3,240,781	+				+0.3
3,240,783	+				-0.0
3,240,828	+				-1.0
3,240,833	+				-2.2
3,240,833	+				+0.4
3,240,838	-				-2.5
3,240,838	-				-1.5
3,240,838	-				-0.7
3,240,841	-				-0.5
3,240,846	-				-1.7
3,240,853	-				+0.9
3,240,897	+				-0.7
3,240,897	+				-0.9
3,240,946	+				-1.3
3,240,946	+				+2.4
3,240,947	-				-0.1
3,240,975	+		IAI47_15385	0.12	-1.9
3,240,975	+		IAI47_15385	0.12	-0.5
3,240,982	-		IAI47_15385	0.13	-0.2
3,240,982	-		IAI47_15385	0.13	+0.9
3,240,982	-		IAI47_15385	0.13	-0.1
3,240,999	+		IAI47_15385	0.15	-1.5
3,241,031	+		IAI47_15385	0.18	-0.4
3,241,052	+		IAI47_15385	0.20	-0.1
3,241,052	+		IAI47_15385	0.20	-0.9
3,241,053	-		IAI47_15385	0.20	-1.7
3,241,076	+		IAI47_15385	0.22	+0.3
3,241,242	+		IAI47_15385	0.38	-0.2
3,241,242	+		IAI47_15385	0.38	+0.7
3,241,243	-		IAI47_15385	0.38	-1.7
3,241,318	-		IAI47_15385	0.46	-0.4
3,241,437	+		IAI47_15385	0.57	-2.4
3,241,437	+		IAI47_15385	0.57	-0.8
3,241,438	-		IAI47_15385	0.57	-0.4
3,241,515	+		IAI47_15385	0.65	-0.7
3,241,515	+		IAI47_15385	0.65	+0.4
3,241,516	-		IAI47_15385	0.65	+0.2
3,241,516	-		IAI47_15385	0.65	+0.4
3,241,542	+		IAI47_15385	0.67	-1.2
3,241,542	+		IAI47_15385	0.67	+0.0
3,241,543	-		IAI47_15385	0.67	-1.7
3,241,543	-		IAI47_15385	0.67	+0.1
3,241,543	-		IAI47_15385	0.67	+1.4
3,241,566	+		IAI47_15385	0.70	-0.6
3,241,567	-		IAI47_15385	0.70	-0.7
3,241,567	-		IAI47_15385	0.70	-0.0
3,241,567	-		IAI47_15385	0.70	-0.7
3,241,603	+		IAI47_15385	0.73	+0.5
3,241,603	+		IAI47_15385	0.73	-0.7
3,241,603	+		IAI47_15385	0.73	-0.3
3,241,604	-		IAI47_15385	0.73	+0.9
3,241,604	-		IAI47_15385	0.73	-0.4
3,241,639	-		IAI47_15385	0.77	-0.4