Strain Fitness in Pantoea sp. MT58 around IAI47_14625

Experiment: Ying_all64 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 1
3,083,497	+		IAI47_14615	0.88	-0.1
3,083,498	-		IAI47_14615	0.88	+1.4
3,083,498	-		IAI47_14615	0.88	-0.1
3,083,498	-		IAI47_14615	0.88	+0.9
3,083,519	+		IAI47_14615	0.90	+0.2
3,083,519	+		IAI47_14615	0.90	-0.1
3,083,564	+				+0.5
3,083,701	+				+0.6
3,083,701	+				-1.3
3,083,701	+				+2.5
3,083,701	+				+0.9
3,083,701	+				-1.9
3,083,702	-				-1.9
3,083,702	-				-1.9
3,083,706	+				+0.2
3,083,706	+				-0.7
3,083,707	-				-0.9
3,083,707	-				-0.4
3,083,707	-				-0.0
3,083,707	-				-0.0
3,083,719	-				+0.2
3,083,753	+				+0.6
3,083,754	-				-0.2
3,083,754	-				+0.3
3,083,781	+				+0.2
3,083,781	+				-0.1
3,083,781	+				-0.8
3,083,782	-				+0.1
3,083,801	+				+0.4
3,083,801	+				+0.7
3,083,802	-				-0.4
3,083,802	-				+0.3
3,083,809	+		IAI47_14620	0.10	+0.2
3,083,809	+		IAI47_14620	0.10	+0.9
3,083,809	+		IAI47_14620	0.10	+0.1
3,083,809	+		IAI47_14620	0.10	-0.9
3,083,809	+		IAI47_14620	0.10	+1.1
3,083,809	+		IAI47_14620	0.10	-0.2
3,083,809	+		IAI47_14620	0.10	+1.0
3,083,809	+		IAI47_14620	0.10	+0.3
3,083,809	+		IAI47_14620	0.10	+0.6
3,083,809	+		IAI47_14620	0.10	-1.2
3,083,810	-		IAI47_14620	0.10	-0.1
3,083,810	-		IAI47_14620	0.10	-1.1
3,083,810	-		IAI47_14620	0.10	+0.5
3,083,810	-		IAI47_14620	0.10	-1.3
3,083,810	-		IAI47_14620	0.10	+1.9
3,083,810	-		IAI47_14620	0.10	-0.6
3,083,810	-		IAI47_14620	0.10	+1.1
3,083,811	-		IAI47_14620	0.11	-1.7
3,083,839	+		IAI47_14620	0.15	+0.9
3,083,889	+		IAI47_14620	0.22	+0.8
3,083,890	-		IAI47_14620	0.22	+0.6
3,083,910	+		IAI47_14620	0.25	+0.7
3,083,911	-		IAI47_14620	0.25	+0.1
3,083,915	+		IAI47_14620	0.26	-0.6
3,083,967	+		IAI47_14620	0.33	-0.4
3,083,967	+		IAI47_14620	0.33	-1.7
3,083,986	+		IAI47_14620	0.36	+0.2
3,083,986	+		IAI47_14620	0.36	-0.4
3,083,986	+		IAI47_14620	0.36	-0.7
3,083,987	-		IAI47_14620	0.36	+0.2
3,083,987	-		IAI47_14620	0.36	-0.5
3,083,987	-		IAI47_14620	0.36	+0.1
3,083,987	-		IAI47_14620	0.36	+1.9
3,084,015	+		IAI47_14620	0.40	-0.5
3,084,037	-		IAI47_14620	0.43	+0.2
3,084,037	-		IAI47_14620	0.43	+0.1
3,084,037	-		IAI47_14620	0.43	+0.5
3,084,065	-		IAI47_14620	0.47	+1.9
3,084,070	+		IAI47_14620	0.48	-1.0
3,084,071	-		IAI47_14620	0.48	+0.4
3,084,257	-		IAI47_14620	0.75	+0.6
3,084,278	+		IAI47_14620	0.78	+0.9
3,084,278	+		IAI47_14620	0.78	+0.6
3,084,278	+		IAI47_14620	0.78	+1.9
3,084,278	+		IAI47_14620	0.78	+0.3
3,084,279	-		IAI47_14620	0.78	-0.0
3,084,279	-		IAI47_14620	0.78	+0.6
3,084,301	+		IAI47_14620	0.81	+0.7
3,084,301	+		IAI47_14620	0.81	+0.6
3,084,301	+		IAI47_14620	0.81	+0.0
3,084,301	+		IAI47_14620	0.81	+1.0
3,084,302	-		IAI47_14620	0.81	-1.3
3,084,302	-		IAI47_14620	0.81	-1.6
3,084,302	-		IAI47_14620	0.81	-0.4
3,084,302	-		IAI47_14620	0.81	-0.5
3,084,303	+		IAI47_14620	0.81	+1.4
3,084,304	-		IAI47_14620	0.81	-0.7
3,084,304	-		IAI47_14620	0.81	-0.7
3,084,358	-		IAI47_14620	0.89	+0.4
3,084,374	-				-0.1
3,084,391	-				-0.0
3,084,395	+				-0.1
3,084,395	+				-0.5
3,084,395	+				+0.9
3,084,395	+				-1.7
3,084,396	-				-0.1
3,084,396	-				-0.5
3,084,396	-				+0.6
3,084,414	+				-0.3
3,084,415	-				-1.0
3,084,426	+				+1.1
3,084,426	+				-0.9
3,084,426	+				+0.5
3,084,427	-				+0.6
3,084,430	+				+0.2
3,084,430	+				-0.4
3,084,430	+				-1.4
3,084,431	-				-0.7
3,084,431	-				-0.4
3,084,460	+				-0.1
3,084,461	-				-0.9
3,084,483	+				-0.1
3,084,484	-				+0.9
3,084,484	-				+0.6
3,084,484	-				+0.0
3,084,512	+				-0.1
3,084,512	+				-0.0
3,084,513	-				+0.6
3,084,513	-				+1.5
3,084,556	+		IAI47_14625	0.19	-0.6
3,084,625	+		IAI47_14625	0.36	+0.5
3,084,626	-		IAI47_14625	0.36	-0.1
3,084,637	+		IAI47_14625	0.39	-1.3
3,084,638	-		IAI47_14625	0.39	+1.8
3,084,668	-		IAI47_14625	0.47	-0.1
3,084,674	+		IAI47_14625	0.48	+0.3
3,084,675	-		IAI47_14625	0.48	-0.7
3,084,675	-		IAI47_14625	0.48	+1.1
3,084,702	+		IAI47_14625	0.55	+0.9
3,084,702	+		IAI47_14625	0.55	-0.7
3,084,703	-		IAI47_14625	0.55	-0.1
3,084,703	-		IAI47_14625	0.55	+0.5
3,084,813	+		IAI47_14625	0.83	-0.5
3,084,813	+		IAI47_14625	0.83	-0.1
3,084,813	+		IAI47_14625	0.83	+0.9
3,084,814	-		IAI47_14625	0.83	-0.3
3,084,814	-		IAI47_14625	0.83	+2.2
3,084,814	-		IAI47_14625	0.83	-0.3
3,084,814	-		IAI47_14625	0.83	-0.0
3,084,814	-		IAI47_14625	0.83	-0.4
3,084,814	-		IAI47_14625	0.83	+1.1
3,084,837	+		IAI47_14625	0.89	+0.3
3,084,837	+		IAI47_14625	0.89	+1.0
3,084,838	-		IAI47_14625	0.89	+0.4
3,084,838	-		IAI47_14625	0.89	-0.7
3,084,852	+				+2.5
3,084,853	-				-1.0
3,084,866	+				+0.0
3,084,866	+				-0.0
3,084,866	+				-0.6
3,084,866	+				+0.4
3,084,866	+				+0.7
3,084,866	+				-0.6
3,084,867	-				+0.2
3,084,867	-				-1.0
3,084,867	-				+1.3
3,084,897	+				-0.3
3,084,898	-				+0.9
3,084,902	+				-0.7
3,084,902	+				+3.1
3,084,902	+				-0.7
3,084,902	+				-0.5
3,084,902	+				-1.7
3,084,902	+				-0.0
3,084,903	-				-0.8
3,084,903	-				-0.7
3,084,903	-				+0.1
3,084,903	-				-1.9
3,084,903	-				-1.0
3,084,908	-				+0.4
3,084,931	-				-0.5
3,084,957	+				+1.4
3,084,957	+				-1.4
3,084,957	+				-0.6
3,084,957	+				-0.7
3,084,957	+				+0.9
3,084,957	+				+0.1
3,084,957	+				+0.6
3,084,958	-				+0.1
3,084,958	-				-0.6
3,084,974	+				+0.4
3,084,974	+				+1.5
3,084,975	-				-0.6
3,084,975	-				+0.1
3,084,975	-				+0.0
3,085,011	+				-0.7
3,085,011	+				+0.1
3,085,011	+				+0.7
3,085,012	-				+0.3
3,085,012	-				-0.2
3,085,012	-				-0.7
3,085,044	-		IAI47_14630	0.18	+1.3
3,085,073	-		IAI47_14630	0.26	+1.9
3,085,084	+		IAI47_14630	0.29	-1.4
3,085,085	-		IAI47_14630	0.29	-0.1
3,085,085	-		IAI47_14630	0.29	+1.1
3,085,085	-		IAI47_14630	0.29	-0.6
3,085,085	-		IAI47_14630	0.29	+0.9
3,085,117	-		IAI47_14630	0.38	+2.1
3,085,117	-		IAI47_14630	0.38	-0.4
3,085,117	-		IAI47_14630	0.38	-0.9
3,085,163	+		IAI47_14630	0.51	-0.1
3,085,163	+		IAI47_14630	0.51	+0.9
3,085,164	-		IAI47_14630	0.52	-0.9
3,085,188	+		IAI47_14630	0.58	-1.1
3,085,189	-		IAI47_14630	0.59	+0.7
3,085,189	-		IAI47_14630	0.59	+0.9
3,085,215	+		IAI47_14630	0.66	-0.4
3,085,271	+		IAI47_14630	0.82	-0.7
3,085,271	+		IAI47_14630	0.82	+0.0
3,085,271	+		IAI47_14630	0.82	+0.5
3,085,272	-		IAI47_14630	0.82	-0.1
3,085,272	-		IAI47_14630	0.82	+2.2
3,085,307	-				+0.4
3,085,322	+				+1.3
3,085,322	+				-0.6
3,085,323	-				+0.1
3,085,328	+				-1.5
3,085,356	-				+0.9
3,085,476	+				+0.2
3,085,476	+				-0.0
3,085,476	+				+0.7
3,085,477	-				+0.9
3,085,477	-				-0.5
3,085,477	-				+1.7
3,085,501	-				-0.8
3,085,501	-				-1.0
3,085,501	-				-0.9
3,085,504	+				+0.2
3,085,519	+				+1.6
3,085,520	-				-2.3
3,085,520	-				+1.7
3,085,561	+				+0.3
3,085,561	+				+0.6
3,085,562	-				-0.1
3,085,562	-				+0.1
3,085,562	-				+0.3
3,085,562	-				+0.9
3,085,562	-				+0.6
3,085,562	-				-1.3
3,085,621	+				+0.5
3,085,627	+				+1.4
3,085,627	+				-0.2
3,085,628	-				+1.7
3,085,644	-				+1.9
3,085,660	+				+0.3
3,085,661	-				-0.4
3,085,661	-				-0.7
3,085,661	-				-1.3
3,085,661	-				+0.2
3,085,661	-				+0.4
3,085,661	-				+0.6
3,085,711	+		IAI47_14635	0.13	-0.2
3,085,711	+		IAI47_14635	0.13	-0.1
3,085,711	+		IAI47_14635	0.13	-0.6
3,085,711	+		IAI47_14635	0.13	+1.2
3,085,711	+		IAI47_14635	0.13	+0.1
3,085,712	-		IAI47_14635	0.13	+1.0
3,085,712	-		IAI47_14635	0.13	-0.1
3,085,745	-		IAI47_14635	0.14	+0.9
3,085,832	-		IAI47_14635	0.19	+1.3
3,085,832	-		IAI47_14635	0.19	+0.9
3,085,832	-		IAI47_14635	0.19	+1.1
3,085,864	+		IAI47_14635	0.21	+1.9
3,085,864	+		IAI47_14635	0.21	+1.1
3,085,864	+		IAI47_14635	0.21	+0.9
3,085,864	+		IAI47_14635	0.21	+1.3
3,085,865	-		IAI47_14635	0.21	-1.0
3,085,873	+		IAI47_14635	0.21	+1.5
3,085,873	+		IAI47_14635	0.21	-2.6
3,085,873	+		IAI47_14635	0.21	-0.1
3,085,873	+		IAI47_14635	0.21	+1.8
3,085,874	-		IAI47_14635	0.21	-0.7
3,085,874	-		IAI47_14635	0.21	+1.2