Strain Fitness in Pantoea sp. MT58 around IAI47_06050

Experiment: Ying_all64 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 1
1,231,337	-				+1.0
1,231,338	+				-0.0
1,231,339	-				-0.5
1,231,343	-				-0.2
1,231,343	-				-0.5
1,231,367	-				-0.9
1,231,379	+				+0.8
1,231,388	+				-0.2
1,231,389	-				+0.2
1,231,389	-				+0.5
1,231,390	+				+0.1
1,231,390	+				+0.2
1,231,390	+				+0.0
1,231,390	+				+0.2
1,231,421	-				-0.8
1,231,421	-				+0.7
1,231,454	+				-0.2
1,231,454	+				+1.7
1,231,454	+				-1.6
1,231,455	-				+1.4
1,231,462	-				-0.7
1,231,472	-				-0.3
1,231,483	+				+1.3
1,231,484	-				+0.5
1,231,484	-				-0.8
1,231,484	-				-0.2
1,231,502	+				+2.4
1,231,502	+				+2.4
1,231,503	-				+0.1
1,231,518	-				+0.3
1,231,525	-				-0.8
1,231,525	-				-0.1
1,231,525	-				+0.0
1,231,525	-				-0.5
1,231,525	-				+0.1
1,231,598	+				-1.3
1,231,599	-				-1.3
1,231,653	+				-0.3
1,231,653	+				+0.6
1,231,654	-				-0.2
1,231,654	-				-2.2
1,231,688	+				-0.3
1,231,689	-				-0.5
1,231,719	+				+2.6
1,231,738	+				+0.0
1,231,738	+				+0.2
1,231,738	+				+1.6
1,231,739	-				+0.6
1,231,739	-				-1.3
1,231,763	-				-0.5
1,231,763	-				+0.5
1,231,852	+		IAI47_06040	0.46	+0.5
1,231,853	-		IAI47_06040	0.46	+2.1
1,231,853	-		IAI47_06040	0.46	+0.5
1,231,942	+		IAI47_06040	0.83	+1.0
1,231,942	+		IAI47_06040	0.83	-0.9
1,231,943	-		IAI47_06040	0.84	+0.5
1,231,943	-		IAI47_06040	0.84	+2.1
1,231,943	-		IAI47_06040	0.84	-0.2
1,231,977	+				-0.3
1,231,977	+				+0.4
1,231,977	+				+0.4
1,231,977	+				+0.1
1,231,977	+				-0.8
1,231,977	+				+0.0
1,231,977	+				-1.3
1,231,977	+				+2.4
1,231,978	-				-0.0
1,231,978	-				+1.4
1,231,978	-				+0.2
1,231,978	-				-0.1
1,231,978	-				-0.1
1,231,978	-				+0.7
1,231,978	-				-0.6
1,231,978	-				-0.0
1,231,978	-				+0.7
1,231,982	+				-1.3
1,231,982	+				+1.2
1,231,983	-				-0.1
1,232,010	+				+0.6
1,232,010	+				-0.6
1,232,011	-				+1.4
1,232,011	-				-1.0
1,232,011	-				+1.6
1,232,011	-				+0.4
1,232,011	-				-1.5
1,232,011	-				-1.0
1,232,036	+		IAI47_06045	0.16	+0.8
1,232,036	+		IAI47_06045	0.16	-0.8
1,232,036	+		IAI47_06045	0.16	+0.4
1,232,036	+		IAI47_06045	0.16	-0.1
1,232,036	+		IAI47_06045	0.16	-0.0
1,232,037	-		IAI47_06045	0.17	+0.6
1,232,037	-		IAI47_06045	0.17	+1.0
1,232,037	-		IAI47_06045	0.17	-1.0
1,232,037	-		IAI47_06045	0.17	+1.4
1,232,037	-		IAI47_06045	0.17	-0.2
1,232,045	+		IAI47_06045	0.19	+0.5
1,232,045	+		IAI47_06045	0.19	+2.4
1,232,045	+		IAI47_06045	0.19	+1.8
1,232,046	-		IAI47_06045	0.19	+0.5
1,232,046	-		IAI47_06045	0.19	-1.0
1,232,046	-		IAI47_06045	0.19	-0.1
1,232,046	-		IAI47_06045	0.19	-0.9
1,232,046	-		IAI47_06045	0.19	-0.2
1,232,046	-		IAI47_06045	0.19	-0.2
1,232,046	-		IAI47_06045	0.19	+0.6
1,232,046	-		IAI47_06045	0.19	+0.1
1,232,046	-		IAI47_06045	0.19	+1.9
1,232,125	+		IAI47_06045	0.44	+0.2
1,232,125	+		IAI47_06045	0.44	+0.1
1,232,125	+		IAI47_06045	0.44	+0.3
1,232,157	+		IAI47_06045	0.54	-0.9
1,232,192	+		IAI47_06045	0.65	+0.2
1,232,192	+		IAI47_06045	0.65	-0.1
1,232,192	+		IAI47_06045	0.65	-0.0
1,232,192	+		IAI47_06045	0.65	+0.8
1,232,192	+		IAI47_06045	0.65	-0.1
1,232,192	+		IAI47_06045	0.65	-1.2
1,232,240	+		IAI47_06045	0.79	-0.4
1,232,240	+		IAI47_06045	0.79	-1.0
1,232,241	-		IAI47_06045	0.80	-1.5
1,232,329	-				+0.4
1,232,329	-				+1.0
1,232,329	-				+0.3
1,232,365	+				+0.0
1,232,366	-				-0.3
1,232,381	+				+0.6
1,232,381	+				+1.1
1,232,382	-				-0.5
1,232,396	+				+2.0
1,232,396	+				-0.0
1,232,396	+				-0.4
1,232,396	+				+0.2
1,232,397	-				+0.8
1,232,397	-				-0.4
1,232,481	+		IAI47_06050	0.14	-0.2
1,232,539	+		IAI47_06050	0.19	+0.0
1,232,556	+		IAI47_06050	0.20	-0.8
1,232,557	-		IAI47_06050	0.20	+0.2
1,232,609	+		IAI47_06050	0.25	-1.6
1,232,609	+		IAI47_06050	0.25	+0.8
1,232,609	+		IAI47_06050	0.25	-0.8
1,232,610	-		IAI47_06050	0.25	+0.4
1,232,610	-		IAI47_06050	0.25	+1.8
1,232,625	+		IAI47_06050	0.26	+1.3
1,232,625	+		IAI47_06050	0.26	+0.8
1,232,695	+		IAI47_06050	0.32	+0.4
1,232,695	+		IAI47_06050	0.32	-1.9
1,232,696	-		IAI47_06050	0.32	+0.2
1,232,712	+		IAI47_06050	0.34	+1.7
1,232,712	+		IAI47_06050	0.34	+2.1
1,232,712	+		IAI47_06050	0.34	-0.5
1,232,713	-		IAI47_06050	0.34	+0.6
1,232,715	+		IAI47_06050	0.34	-0.5
1,232,715	+		IAI47_06050	0.34	+1.0
1,232,715	+		IAI47_06050	0.34	-0.3
1,232,716	-		IAI47_06050	0.34	-0.7
1,232,716	-		IAI47_06050	0.34	+0.8
1,232,716	-		IAI47_06050	0.34	-1.2
1,232,716	-		IAI47_06050	0.34	+0.8
1,232,716	-		IAI47_06050	0.34	-0.4
1,232,716	-		IAI47_06050	0.34	-0.2
1,232,758	+		IAI47_06050	0.38	-0.1
1,232,758	+		IAI47_06050	0.38	-0.2
1,232,758	+		IAI47_06050	0.38	+1.2
1,232,758	+		IAI47_06050	0.38	+0.8
1,232,758	+		IAI47_06050	0.38	-0.5
1,232,781	+		IAI47_06050	0.40	+0.8
1,232,781	+		IAI47_06050	0.40	+1.3
1,232,782	-		IAI47_06050	0.40	-1.5
1,232,782	-		IAI47_06050	0.40	-0.6
1,232,783	+		IAI47_06050	0.40	+0.8
1,232,784	-		IAI47_06050	0.40	+0.2
1,232,784	-		IAI47_06050	0.40	-0.3
1,232,784	-		IAI47_06050	0.40	-0.8
1,232,828	+		IAI47_06050	0.44	-1.0
1,232,844	+		IAI47_06050	0.45	-0.1
1,232,866	-		IAI47_06050	0.47	+0.2
1,232,866	-		IAI47_06050	0.47	+2.2
1,232,882	+		IAI47_06050	0.48	-0.3
1,232,882	+		IAI47_06050	0.48	-0.6
1,232,883	-		IAI47_06050	0.48	+0.6
1,232,883	-		IAI47_06050	0.48	-0.9
1,232,883	-		IAI47_06050	0.48	-1.3
1,232,883	-		IAI47_06050	0.48	-0.1
1,232,883	-		IAI47_06050	0.48	-1.1
1,232,883	-		IAI47_06050	0.48	-0.6
1,232,897	+		IAI47_06050	0.49	+0.8
1,232,935	-		IAI47_06050	0.53	-0.0
1,232,936	+		IAI47_06050	0.53	-0.3
1,232,936	+		IAI47_06050	0.53	+0.3
1,232,936	+		IAI47_06050	0.53	-0.2
1,232,936	+		IAI47_06050	0.53	-0.2
1,232,936	+		IAI47_06050	0.53	-0.3
1,232,936	+		IAI47_06050	0.53	-0.5
1,232,936	+		IAI47_06050	0.53	-0.5
1,232,936	+		IAI47_06050	0.53	+1.0
1,232,937	-		IAI47_06050	0.53	+0.2
1,232,937	-		IAI47_06050	0.53	-0.2
1,232,937	-		IAI47_06050	0.53	-0.2
1,232,937	-		IAI47_06050	0.53	-1.3
1,232,937	-		IAI47_06050	0.53	-0.7
1,232,937	-		IAI47_06050	0.53	-0.0
1,232,937	-		IAI47_06050	0.53	-0.2
1,232,937	-		IAI47_06050	0.53	-0.2
1,232,937	-		IAI47_06050	0.53	-1.5
1,232,937	-		IAI47_06050	0.53	-2.3
1,232,937	-		IAI47_06050	0.53	-1.0
1,232,937	-		IAI47_06050	0.53	+2.1
1,232,937	-		IAI47_06050	0.53	-0.4
1,232,940	+		IAI47_06050	0.53	-0.1
1,232,940	+		IAI47_06050	0.53	-1.0
1,232,940	+		IAI47_06050	0.53	-1.6
1,232,941	-		IAI47_06050	0.53	-0.8
1,232,953	+		IAI47_06050	0.54	+0.0
1,233,036	+		IAI47_06050	0.61	+0.7
1,233,036	+		IAI47_06050	0.61	-1.8
1,233,036	+		IAI47_06050	0.61	-1.5
1,233,036	+		IAI47_06050	0.61	+0.7
1,233,036	+		IAI47_06050	0.61	+0.1
1,233,036	+		IAI47_06050	0.61	+0.3
1,233,037	-		IAI47_06050	0.61	-0.8
1,233,039	+		IAI47_06050	0.62	+0.8
1,233,039	+		IAI47_06050	0.62	-0.1
1,233,039	+		IAI47_06050	0.62	-0.5
1,233,039	+		IAI47_06050	0.62	+1.1
1,233,039	+		IAI47_06050	0.62	+0.2
1,233,039	+		IAI47_06050	0.62	-0.2
1,233,040	-		IAI47_06050	0.62	+0.0
1,233,090	+		IAI47_06050	0.66	-0.5
1,233,090	+		IAI47_06050	0.66	-0.1
1,233,091	-		IAI47_06050	0.66	-0.8
1,233,137	+		IAI47_06050	0.70	+0.1
1,233,137	+		IAI47_06050	0.70	+1.2
1,233,170	+		IAI47_06050	0.73	+0.4
1,233,170	+		IAI47_06050	0.73	+1.1
1,233,170	+		IAI47_06050	0.73	-1.2
1,233,170	+		IAI47_06050	0.73	-0.8
1,233,170	+		IAI47_06050	0.73	-0.1
1,233,170	+		IAI47_06050	0.73	+0.4
1,233,170	+		IAI47_06050	0.73	-0.3
1,233,171	-		IAI47_06050	0.73	+1.2
1,233,171	-		IAI47_06050	0.73	+0.1
1,233,171	-		IAI47_06050	0.73	-1.2
1,233,171	-		IAI47_06050	0.73	+0.5
1,233,184	+		IAI47_06050	0.74	+0.1
1,233,184	+		IAI47_06050	0.74	-0.2
1,233,185	-		IAI47_06050	0.74	+0.6
1,233,185	-		IAI47_06050	0.74	-0.0
1,233,185	-		IAI47_06050	0.74	+0.5
1,233,185	-		IAI47_06050	0.74	+1.1
1,233,185	-		IAI47_06050	0.74	-1.2
1,233,185	-		IAI47_06050	0.74	+1.4
1,233,198	+		IAI47_06050	0.75	+0.8
1,233,199	-		IAI47_06050	0.75	-1.3
1,233,199	-		IAI47_06050	0.75	+0.4
1,233,265	-		IAI47_06050	0.81	-0.2
1,233,440	+				-0.8
1,233,447	+				-1.2
1,233,447	+				+0.5
1,233,447	+				+1.4
1,233,447	+				+0.2
1,233,447	+				+0.1
1,233,447	+				+0.1
1,233,447	+				+0.0
1,233,447	+				-1.0
1,233,447	+				+0.4
1,233,448	-				-0.8
1,233,453	+				+0.2
1,233,453	+				-1.4
1,233,453	+				-0.2
1,233,509	+				-0.3
1,233,705	+		IAI47_06055	0.69	-0.8
1,233,705	+		IAI47_06055	0.69	-1.5
1,233,706	-		IAI47_06055	0.71	-1.8
1,233,706	-		IAI47_06055	0.71	-1.5
1,233,706	-		IAI47_06055	0.71	-1.2
1,233,706	-		IAI47_06055	0.71	-0.2
1,233,707	+		IAI47_06055	0.72	-0.2
1,233,707	+		IAI47_06055	0.72	-0.8
1,233,708	-		IAI47_06055	0.73	-2.0
1,233,708	-		IAI47_06055	0.73	-3.1
1,233,708	-		IAI47_06055	0.73	-2.0
1,233,708	-		IAI47_06055	0.73	-0.2
1,233,708	-		IAI47_06055	0.73	-3.3
1,233,708	-		IAI47_06055	0.73	+0.8
1,233,716	-		IAI47_06055	0.84	-1.2
1,233,716	-		IAI47_06055	0.84	-0.9
1,233,716	-		IAI47_06055	0.84	-3.1
1,233,719	+		IAI47_06055	0.88	-1.8
1,233,719	+		IAI47_06055	0.88	-0.8
1,233,720	-				-2.6
1,233,720	-				+0.8
1,233,720	-				-2.3
1,233,740	+				-0.6
1,233,741	-				-1.5
1,233,742	+				+0.8
1,233,827	+				-0.3
1,233,828	-				+0.8
1,233,896	+				-0.9
1,233,896	+				-0.9
1,233,896	+				-0.3
1,233,897	-				+0.1
1,233,968	+				+0.0
1,234,164	+		IAI47_06060	0.21	+0.7
1,234,164	+		IAI47_06060	0.21	+1.1
1,234,164	+		IAI47_06060	0.21	-1.2
1,234,165	-		IAI47_06060	0.21	-0.5
1,234,165	-		IAI47_06060	0.21	+2.4
1,234,165	-		IAI47_06060	0.21	-0.5
1,234,165	-		IAI47_06060	0.21	-0.4
1,234,165	-		IAI47_06060	0.21	-0.8
1,234,165	-		IAI47_06060	0.21	+0.2
1,234,165	-		IAI47_06060	0.21	-0.5
1,234,187	+		IAI47_06060	0.24	-0.9
1,234,187	+		IAI47_06060	0.24	+0.4
1,234,187	+		IAI47_06060	0.24	-0.1
1,234,187	+		IAI47_06060	0.24	+0.8
1,234,188	-		IAI47_06060	0.24	+1.8
1,234,188	-		IAI47_06060	0.24	-2.2
1,234,188	-		IAI47_06060	0.24	-0.6
1,234,188	-		IAI47_06060	0.24	-0.2
1,234,198	+		IAI47_06060	0.25	-0.8
1,234,198	+		IAI47_06060	0.25	-1.7
1,234,198	+		IAI47_06060	0.25	+0.2
1,234,199	-		IAI47_06060	0.25	+1.6
1,234,199	-		IAI47_06060	0.25	+0.5
1,234,314	+		IAI47_06060	0.37	+0.8
1,234,326	-		IAI47_06060	0.38	+0.8
1,234,455	+		IAI47_06060	0.52	-0.8
1,234,455	+		IAI47_06060	0.52	+0.8
1,234,456	-		IAI47_06060	0.52	+1.2
1,234,456	-		IAI47_06060	0.52	-0.9
1,234,456	-		IAI47_06060	0.52	-0.7
1,234,456	-		IAI47_06060	0.52	+0.8