Strain Fitness in Pantoea sp. MT58 around IAI47_04100

Experiment: Ying_all64 rep C; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_04090 and IAI47_04095 are separated by 45 nucleotidesIAI47_04095 and IAI47_04100 are separated by 19 nucleotidesIAI47_04100 and IAI47_04105 are separated by 74 nucleotides IAI47_04090: IAI47_04090 - glucarate dehydratase, at 855,310 to 856,641 _04090 IAI47_04095: IAI47_04095 - 2-dehydro-3-deoxyglucarate aldolase, at 856,687 to 857,457 _04095 IAI47_04100: IAI47_04100 - 2-hydroxy-3-oxopropionate reductase, at 857,477 to 858,361 _04100 IAI47_04105: IAI47_04105 - glycerate kinase, at 858,436 to 859,575 _04105 Position (kb) 857 858 859Strain fitness (log2 ratio) -2 -1 0 1 2 3at 856.499 kb on + strand, within IAI47_04090at 856.510 kb on - strandat 856.541 kb on - strandat 856.592 kb on + strandat 856.617 kb on + strandat 856.618 kb on - strandat 856.692 kb on + strandat 856.692 kb on + strandat 856.692 kb on + strandat 856.692 kb on + strandat 856.692 kb on + strandat 856.693 kb on - strandat 856.693 kb on - strandat 856.862 kb on + strand, within IAI47_04095at 856.863 kb on - strand, within IAI47_04095at 856.938 kb on + strand, within IAI47_04095at 856.938 kb on + strand, within IAI47_04095at 856.938 kb on + strand, within IAI47_04095at 856.939 kb on - strand, within IAI47_04095at 856.939 kb on - strand, within IAI47_04095at 856.939 kb on - strand, within IAI47_04095at 856.963 kb on - strand, within IAI47_04095at 857.080 kb on + strand, within IAI47_04095at 857.081 kb on - strand, within IAI47_04095at 857.081 kb on - strand, within IAI47_04095at 857.081 kb on - strand, within IAI47_04095at 857.081 kb on - strand, within IAI47_04095at 857.081 kb on - strand, within IAI47_04095at 857.081 kb on - strand, within IAI47_04095at 857.081 kb on - strand, within IAI47_04095at 857.081 kb on - strand, within IAI47_04095at 857.098 kb on + strand, within IAI47_04095at 857.098 kb on + strand, within IAI47_04095at 857.098 kb on + strand, within IAI47_04095at 857.099 kb on - strand, within IAI47_04095at 857.243 kb on - strand, within IAI47_04095at 857.283 kb on + strand, within IAI47_04095at 857.284 kb on - strand, within IAI47_04095at 857.342 kb on + strand, within IAI47_04095at 857.362 kb on + strand, within IAI47_04095at 857.435 kb on + strandat 857.449 kb on - strandat 857.449 kb on - strandat 857.449 kb on - strandat 857.463 kb on + strandat 857.464 kb on - strandat 857.491 kb on + strandat 857.556 kb on + strandat 857.557 kb on - strandat 857.557 kb on - strandat 857.596 kb on + strand, within IAI47_04100at 857.597 kb on - strand, within IAI47_04100at 857.659 kb on + strand, within IAI47_04100at 857.659 kb on + strand, within IAI47_04100at 857.659 kb on + strand, within IAI47_04100at 857.659 kb on + strand, within IAI47_04100at 857.660 kb on - strand, within IAI47_04100at 857.660 kb on - strand, within IAI47_04100at 857.660 kb on - strand, within IAI47_04100at 857.660 kb on - strand, within IAI47_04100at 857.717 kb on - strand, within IAI47_04100at 857.787 kb on + strand, within IAI47_04100at 857.788 kb on - strand, within IAI47_04100at 857.893 kb on + strand, within IAI47_04100at 857.894 kb on - strand, within IAI47_04100at 857.915 kb on + strand, within IAI47_04100at 857.915 kb on + strand, within IAI47_04100at 857.915 kb on + strand, within IAI47_04100at 857.915 kb on + strand, within IAI47_04100at 857.915 kb on + strand, within IAI47_04100at 857.916 kb on - strand, within IAI47_04100at 857.916 kb on - strand, within IAI47_04100at 857.954 kb on - strand, within IAI47_04100at 857.983 kb on + strand, within IAI47_04100at 857.983 kb on + strand, within IAI47_04100at 857.984 kb on - strand, within IAI47_04100at 857.984 kb on - strand, within IAI47_04100at 858.081 kb on - strand, within IAI47_04100at 858.211 kb on + strand, within IAI47_04100at 858.211 kb on + strand, within IAI47_04100at 858.212 kb on - strand, within IAI47_04100at 858.212 kb on - strand, within IAI47_04100at 858.323 kb on + strandat 858.323 kb on + strandat 858.323 kb on + strandat 858.324 kb on - strandat 858.324 kb on - strandat 858.324 kb on - strandat 858.326 kb on + strandat 858.326 kb on + strandat 858.326 kb on + strandat 858.326 kb on + strandat 858.327 kb on - strandat 858.327 kb on - strandat 858.337 kb on - strandat 858.337 kb on - strandat 858.359 kb on + strandat 858.463 kb on + strandat 858.463 kb on + strandat 858.463 kb on + strandat 858.463 kb on + strandat 858.463 kb on + strandat 858.464 kb on - strandat 858.464 kb on - strandat 858.465 kb on + strandat 858.465 kb on + strandat 858.466 kb on - strandat 858.466 kb on - strandat 858.466 kb on - strandat 858.466 kb on - strandat 858.476 kb on + strandat 858.541 kb on + strandat 858.541 kb on + strandat 858.541 kb on + strandat 858.541 kb on + strandat 858.542 kb on - strandat 858.542 kb on - strandat 858.542 kb on - strandat 858.542 kb on - strandat 858.581 kb on + strand, within IAI47_04105at 858.581 kb on + strand, within IAI47_04105at 858.581 kb on + strand, within IAI47_04105at 858.581 kb on + strand, within IAI47_04105at 858.582 kb on - strand, within IAI47_04105at 858.582 kb on - strand, within IAI47_04105at 858.664 kb on + strand, within IAI47_04105at 858.664 kb on + strand, within IAI47_04105at 858.665 kb on - strand, within IAI47_04105at 858.665 kb on - strand, within IAI47_04105at 858.694 kb on + strand, within IAI47_04105at 858.694 kb on + strand, within IAI47_04105at 858.694 kb on + strand, within IAI47_04105at 858.694 kb on + strand, within IAI47_04105at 858.694 kb on + strand, within IAI47_04105at 858.694 kb on + strand, within IAI47_04105at 858.694 kb on + strand, within IAI47_04105at 858.695 kb on - strand, within IAI47_04105at 858.695 kb on - strand, within IAI47_04105at 858.695 kb on - strand, within IAI47_04105at 858.696 kb on + strand, within IAI47_04105at 858.758 kb on + strand, within IAI47_04105at 858.819 kb on + strand, within IAI47_04105at 858.820 kb on - strand, within IAI47_04105at 858.820 kb on - strand, within IAI47_04105at 858.832 kb on - strand, within IAI47_04105at 858.960 kb on + strand, within IAI47_04105at 858.961 kb on - strand, within IAI47_04105at 858.961 kb on - strand, within IAI47_04105at 859.021 kb on - strand, within IAI47_04105at 859.121 kb on - strand, within IAI47_04105at 859.121 kb on - strand, within IAI47_04105at 859.121 kb on - strand, within IAI47_04105at 859.121 kb on - strand, within IAI47_04105at 859.131 kb on + strand, within IAI47_04105at 859.132 kb on - strand, within IAI47_04105at 859.149 kb on + strand, within IAI47_04105at 859.150 kb on - strand, within IAI47_04105at 859.303 kb on - strand, within IAI47_04105at 859.332 kb on + strand, within IAI47_04105at 859.332 kb on + strand, within IAI47_04105at 859.332 kb on + strand, within IAI47_04105at 859.332 kb on + strand, within IAI47_04105at 859.333 kb on - strand, within IAI47_04105at 859.333 kb on - strand, within IAI47_04105at 859.333 kb on - strand, within IAI47_04105at 859.333 kb on - strand, within IAI47_04105at 859.333 kb on - strand, within IAI47_04105at 859.335 kb on + strand, within IAI47_04105at 859.335 kb on + strand, within IAI47_04105at 859.336 kb on - strand, within IAI47_04105

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep C; time point 1
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856,499 + IAI47_04090 0.89 -0.3
856,510 - +0.5
856,541 - -0.2
856,592 + -0.2
856,617 + -0.7
856,618 - +1.1
856,692 + +0.3
856,692 + +0.6
856,692 + -2.0
856,692 + -0.5
856,692 + +0.1
856,693 - +0.4
856,693 - +1.3
856,862 + IAI47_04095 0.23 +1.8
856,863 - IAI47_04095 0.23 -0.5
856,938 + IAI47_04095 0.33 -1.0
856,938 + IAI47_04095 0.33 +0.4
856,938 + IAI47_04095 0.33 +1.8
856,939 - IAI47_04095 0.33 -0.3
856,939 - IAI47_04095 0.33 -0.5
856,939 - IAI47_04095 0.33 +1.1
856,963 - IAI47_04095 0.36 +1.0
857,080 + IAI47_04095 0.51 -0.2
857,081 - IAI47_04095 0.51 +0.7
857,081 - IAI47_04095 0.51 +0.2
857,081 - IAI47_04095 0.51 +2.8
857,081 - IAI47_04095 0.51 +0.3
857,081 - IAI47_04095 0.51 +0.5
857,081 - IAI47_04095 0.51 +0.8
857,081 - IAI47_04095 0.51 +0.3
857,081 - IAI47_04095 0.51 -0.7
857,098 + IAI47_04095 0.53 +0.7
857,098 + IAI47_04095 0.53 -1.0
857,098 + IAI47_04095 0.53 -0.3
857,099 - IAI47_04095 0.53 -1.0
857,243 - IAI47_04095 0.72 +1.4
857,283 + IAI47_04095 0.77 +0.3
857,284 - IAI47_04095 0.77 -1.2
857,342 + IAI47_04095 0.85 +1.4
857,362 + IAI47_04095 0.88 -0.2
857,435 + +0.1
857,449 - +0.5
857,449 - +0.7
857,449 - +1.3
857,463 + +1.2
857,464 - -0.7
857,491 + +0.5
857,556 + -0.1
857,557 - +0.1
857,557 - -2.0
857,596 + IAI47_04100 0.13 +1.3
857,597 - IAI47_04100 0.14 -0.8
857,659 + IAI47_04100 0.21 +0.4
857,659 + IAI47_04100 0.21 -0.4
857,659 + IAI47_04100 0.21 -0.3
857,659 + IAI47_04100 0.21 +0.3
857,660 - IAI47_04100 0.21 -0.6
857,660 - IAI47_04100 0.21 +0.3
857,660 - IAI47_04100 0.21 +1.3
857,660 - IAI47_04100 0.21 -0.4
857,717 - IAI47_04100 0.27 +0.8
857,787 + IAI47_04100 0.35 -0.5
857,788 - IAI47_04100 0.35 -1.5
857,893 + IAI47_04100 0.47 +0.9
857,894 - IAI47_04100 0.47 -0.7
857,915 + IAI47_04100 0.49 -0.9
857,915 + IAI47_04100 0.49 +0.4
857,915 + IAI47_04100 0.49 +0.7
857,915 + IAI47_04100 0.49 +0.7
857,915 + IAI47_04100 0.49 -0.6
857,916 - IAI47_04100 0.50 +0.4
857,916 - IAI47_04100 0.50 +0.1
857,954 - IAI47_04100 0.54 +0.2
857,983 + IAI47_04100 0.57 +0.1
857,983 + IAI47_04100 0.57 -1.2
857,984 - IAI47_04100 0.57 +0.2
857,984 - IAI47_04100 0.57 -0.2
858,081 - IAI47_04100 0.68 +0.8
858,211 + IAI47_04100 0.83 -0.4
858,211 + IAI47_04100 0.83 -0.2
858,212 - IAI47_04100 0.83 +1.0
858,212 - IAI47_04100 0.83 -1.0
858,323 + -1.6
858,323 + +0.0
858,323 + +1.1
858,324 - +0.1
858,324 - +0.3
858,324 - -0.5
858,326 + -0.7
858,326 + -0.7
858,326 + +0.3
858,326 + +0.5
858,327 - +0.3
858,327 - +0.4
858,337 - +0.1
858,337 - +0.8
858,359 + -0.3
858,463 + +0.8
858,463 + -0.1
858,463 + +0.2
858,463 + -0.2
858,463 + +0.5
858,464 - +0.8
858,464 - -0.0
858,465 + -0.2
858,465 + +0.3
858,466 - +0.2
858,466 - -1.2
858,466 - +1.1
858,466 - -0.4
858,476 + +1.3
858,541 + -1.5
858,541 + -0.3
858,541 + +1.3
858,541 + +1.3
858,542 - +0.1
858,542 - -0.2
858,542 - -2.0
858,542 - +0.0
858,581 + IAI47_04105 0.13 -0.2
858,581 + IAI47_04105 0.13 +0.3
858,581 + IAI47_04105 0.13 +0.3
858,581 + IAI47_04105 0.13 +0.3
858,582 - IAI47_04105 0.13 +0.0
858,582 - IAI47_04105 0.13 -0.7
858,664 + IAI47_04105 0.20 +0.7
858,664 + IAI47_04105 0.20 -0.1
858,665 - IAI47_04105 0.20 +0.8
858,665 - IAI47_04105 0.20 -0.4
858,694 + IAI47_04105 0.23 +0.1
858,694 + IAI47_04105 0.23 -1.5
858,694 + IAI47_04105 0.23 +1.3
858,694 + IAI47_04105 0.23 -0.5
858,694 + IAI47_04105 0.23 -0.7
858,694 + IAI47_04105 0.23 +2.3
858,694 + IAI47_04105 0.23 +2.0
858,695 - IAI47_04105 0.23 -0.7
858,695 - IAI47_04105 0.23 -0.0
858,695 - IAI47_04105 0.23 +0.8
858,696 + IAI47_04105 0.23 -0.2
858,758 + IAI47_04105 0.28 +0.7
858,819 + IAI47_04105 0.34 +0.5
858,820 - IAI47_04105 0.34 -1.6
858,820 - IAI47_04105 0.34 -0.5
858,832 - IAI47_04105 0.35 +1.4
858,960 + IAI47_04105 0.46 -0.7
858,961 - IAI47_04105 0.46 -0.2
858,961 - IAI47_04105 0.46 +0.3
859,021 - IAI47_04105 0.51 -0.2
859,121 - IAI47_04105 0.60 -0.3
859,121 - IAI47_04105 0.60 +0.1
859,121 - IAI47_04105 0.60 +0.1
859,121 - IAI47_04105 0.60 -0.3
859,131 + IAI47_04105 0.61 -0.7
859,132 - IAI47_04105 0.61 +0.5
859,149 + IAI47_04105 0.63 -0.4
859,150 - IAI47_04105 0.63 +1.2
859,303 - IAI47_04105 0.76 +0.3
859,332 + IAI47_04105 0.79 -1.4
859,332 + IAI47_04105 0.79 -0.7
859,332 + IAI47_04105 0.79 +1.6
859,332 + IAI47_04105 0.79 +0.8
859,333 - IAI47_04105 0.79 -0.7
859,333 - IAI47_04105 0.79 -0.2
859,333 - IAI47_04105 0.79 +0.7
859,333 - IAI47_04105 0.79 -0.7
859,333 - IAI47_04105 0.79 -1.2
859,335 + IAI47_04105 0.79 +2.4
859,335 + IAI47_04105 0.79 +0.5
859,336 - IAI47_04105 0.79 +1.2

Or see this region's nucleotide sequence