Experiment: Cytidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04460 and MPMX20_04461 are separated by 51 nucleotides MPMX20_04461 and MPMX20_04462 are separated by 42 nucleotides MPMX20_04462 and MPMX20_04463 are separated by 357 nucleotides
MPMX20_04460: MPMX20_04460 - hypothetical protein, at 4,663,823 to 4,664,290
_04460
MPMX20_04461: MPMX20_04461 - Protein RarD, at 4,664,342 to 4,665,238
_04461
MPMX20_04462: MPMX20_04462 - Magnesium transport protein CorA, at 4,665,281 to 4,666,231
_04462
MPMX20_04463: MPMX20_04463 - DNA helicase II, at 4,666,589 to 4,668,751
_04463
Position (kb)
4665
4666
4667 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4664.282 kb on - strand at 4664.365 kb on + strand at 4664.380 kb on - strand at 4664.380 kb on - strand at 4664.387 kb on - strand at 4664.455 kb on - strand, within MPMX20_04461 at 4664.503 kb on - strand, within MPMX20_04461 at 4664.511 kb on + strand, within MPMX20_04461 at 4664.513 kb on - strand, within MPMX20_04461 at 4664.556 kb on + strand, within MPMX20_04461 at 4664.572 kb on + strand, within MPMX20_04461 at 4664.584 kb on + strand, within MPMX20_04461 at 4664.614 kb on - strand, within MPMX20_04461 at 4664.614 kb on - strand, within MPMX20_04461 at 4664.638 kb on + strand, within MPMX20_04461 at 4664.643 kb on + strand, within MPMX20_04461 at 4664.643 kb on + strand, within MPMX20_04461 at 4664.674 kb on + strand, within MPMX20_04461 at 4664.679 kb on + strand, within MPMX20_04461 at 4664.679 kb on + strand, within MPMX20_04461 at 4664.679 kb on + strand, within MPMX20_04461 at 4664.687 kb on - strand, within MPMX20_04461 at 4664.692 kb on - strand, within MPMX20_04461 at 4664.735 kb on + strand, within MPMX20_04461 at 4664.765 kb on - strand, within MPMX20_04461 at 4664.779 kb on + strand, within MPMX20_04461 at 4664.801 kb on + strand, within MPMX20_04461 at 4664.987 kb on - strand, within MPMX20_04461 at 4664.997 kb on - strand, within MPMX20_04461 at 4665.025 kb on + strand, within MPMX20_04461 at 4665.025 kb on + strand, within MPMX20_04461 at 4665.084 kb on + strand, within MPMX20_04461 at 4665.209 kb on + strand at 4665.271 kb on + strand at 4665.366 kb on - strand at 4665.407 kb on + strand, within MPMX20_04462 at 4665.468 kb on + strand, within MPMX20_04462 at 4665.473 kb on + strand, within MPMX20_04462 at 4665.678 kb on - strand, within MPMX20_04462 at 4665.724 kb on - strand, within MPMX20_04462 at 4665.774 kb on + strand, within MPMX20_04462 at 4665.774 kb on + strand, within MPMX20_04462 at 4665.868 kb on + strand, within MPMX20_04462 at 4665.876 kb on - strand, within MPMX20_04462 at 4665.915 kb on - strand, within MPMX20_04462 at 4665.915 kb on - strand, within MPMX20_04462 at 4665.922 kb on + strand, within MPMX20_04462 at 4665.970 kb on - strand, within MPMX20_04462 at 4666.145 kb on + strand at 4666.163 kb on - strand at 4666.176 kb on - strand at 4666.182 kb on + strand at 4666.190 kb on - strand at 4666.213 kb on + strand at 4666.301 kb on + strand at 4666.319 kb on - strand at 4666.330 kb on + strand at 4666.360 kb on - strand at 4666.382 kb on - strand at 4666.440 kb on + strand at 4666.464 kb on - strand at 4666.615 kb on - strand at 4666.625 kb on - strand at 4666.667 kb on + strand at 4666.719 kb on - strand at 4666.799 kb on + strand at 4666.816 kb on + strand, within MPMX20_04463 at 4666.820 kb on + strand, within MPMX20_04463 at 4666.844 kb on - strand, within MPMX20_04463 at 4666.844 kb on - strand, within MPMX20_04463 at 4666.871 kb on + strand, within MPMX20_04463 at 4666.887 kb on - strand, within MPMX20_04463 at 4666.897 kb on - strand, within MPMX20_04463 at 4666.994 kb on - strand, within MPMX20_04463 at 4667.031 kb on - strand, within MPMX20_04463 at 4667.054 kb on + strand, within MPMX20_04463 at 4667.054 kb on + strand, within MPMX20_04463 at 4667.062 kb on - strand, within MPMX20_04463 at 4667.091 kb on + strand, within MPMX20_04463 at 4667.114 kb on - strand, within MPMX20_04463
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine (N) remove 4,664,282 - +0.0 4,664,365 + +0.4 4,664,380 - -1.6 4,664,380 - +0.1 4,664,387 - -0.3 4,664,455 - MPMX20_04461 0.13 +0.3 4,664,503 - MPMX20_04461 0.18 +0.7 4,664,511 + MPMX20_04461 0.19 +1.4 4,664,513 - MPMX20_04461 0.19 -1.6 4,664,556 + MPMX20_04461 0.24 -0.1 4,664,572 + MPMX20_04461 0.26 +0.4 4,664,584 + MPMX20_04461 0.27 +0.3 4,664,614 - MPMX20_04461 0.30 +1.4 4,664,614 - MPMX20_04461 0.30 -1.4 4,664,638 + MPMX20_04461 0.33 +0.2 4,664,643 + MPMX20_04461 0.34 -1.1 4,664,643 + MPMX20_04461 0.34 +0.1 4,664,674 + MPMX20_04461 0.37 +0.6 4,664,679 + MPMX20_04461 0.38 -1.1 4,664,679 + MPMX20_04461 0.38 +1.4 4,664,679 + MPMX20_04461 0.38 -2.9 4,664,687 - MPMX20_04461 0.38 -0.4 4,664,692 - MPMX20_04461 0.39 -0.9 4,664,735 + MPMX20_04461 0.44 -0.6 4,664,765 - MPMX20_04461 0.47 -1.6 4,664,779 + MPMX20_04461 0.49 +0.1 4,664,801 + MPMX20_04461 0.51 +0.2 4,664,987 - MPMX20_04461 0.72 +0.8 4,664,997 - MPMX20_04461 0.73 +0.8 4,665,025 + MPMX20_04461 0.76 -0.2 4,665,025 + MPMX20_04461 0.76 -0.4 4,665,084 + MPMX20_04461 0.83 -1.7 4,665,209 + +0.4 4,665,271 + +0.1 4,665,366 - +0.1 4,665,407 + MPMX20_04462 0.13 +2.4 4,665,468 + MPMX20_04462 0.20 -0.2 4,665,473 + MPMX20_04462 0.20 +0.2 4,665,678 - MPMX20_04462 0.42 +0.0 4,665,724 - MPMX20_04462 0.47 +0.8 4,665,774 + MPMX20_04462 0.52 -0.8 4,665,774 + MPMX20_04462 0.52 +0.9 4,665,868 + MPMX20_04462 0.62 +1.7 4,665,876 - MPMX20_04462 0.63 -1.1 4,665,915 - MPMX20_04462 0.67 -0.6 4,665,915 - MPMX20_04462 0.67 -0.6 4,665,922 + MPMX20_04462 0.67 -0.5 4,665,970 - MPMX20_04462 0.72 +2.4 4,666,145 + -0.1 4,666,163 - -1.4 4,666,176 - -1.1 4,666,182 + -1.4 4,666,190 - -0.1 4,666,213 + +0.2 4,666,301 + -0.8 4,666,319 - -2.4 4,666,330 + -0.6 4,666,360 - +0.6 4,666,382 - -0.8 4,666,440 + +0.9 4,666,464 - -0.9 4,666,615 - +0.6 4,666,625 - -1.9 4,666,667 + -0.5 4,666,719 - +0.2 4,666,799 + -0.6 4,666,816 + MPMX20_04463 0.10 -0.3 4,666,820 + MPMX20_04463 0.11 -3.1 4,666,844 - MPMX20_04463 0.12 -0.2 4,666,844 - MPMX20_04463 0.12 -0.2 4,666,871 + MPMX20_04463 0.13 -2.2 4,666,887 - MPMX20_04463 0.14 -0.8 4,666,897 - MPMX20_04463 0.14 -2.2 4,666,994 - MPMX20_04463 0.19 -1.6 4,667,031 - MPMX20_04463 0.20 +0.4 4,667,054 + MPMX20_04463 0.21 -0.6 4,667,054 + MPMX20_04463 0.21 -1.4 4,667,062 - MPMX20_04463 0.22 +1.4 4,667,091 + MPMX20_04463 0.23 -1.6 4,667,114 - MPMX20_04463 0.24 -0.3
Or see this region's nucleotide sequence