Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04462

Experiment: Cytidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04460 and MPMX20_04461 are separated by 51 nucleotidesMPMX20_04461 and MPMX20_04462 are separated by 42 nucleotidesMPMX20_04462 and MPMX20_04463 are separated by 357 nucleotides MPMX20_04460: MPMX20_04460 - hypothetical protein, at 4,663,823 to 4,664,290 _04460 MPMX20_04461: MPMX20_04461 - Protein RarD, at 4,664,342 to 4,665,238 _04461 MPMX20_04462: MPMX20_04462 - Magnesium transport protein CorA, at 4,665,281 to 4,666,231 _04462 MPMX20_04463: MPMX20_04463 - DNA helicase II, at 4,666,589 to 4,668,751 _04463 Position (kb) 4665 4666 4667Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4664.282 kb on - strandat 4664.365 kb on + strandat 4664.380 kb on - strandat 4664.380 kb on - strandat 4664.387 kb on - strandat 4664.455 kb on - strand, within MPMX20_04461at 4664.503 kb on - strand, within MPMX20_04461at 4664.511 kb on + strand, within MPMX20_04461at 4664.513 kb on - strand, within MPMX20_04461at 4664.556 kb on + strand, within MPMX20_04461at 4664.572 kb on + strand, within MPMX20_04461at 4664.584 kb on + strand, within MPMX20_04461at 4664.614 kb on - strand, within MPMX20_04461at 4664.614 kb on - strand, within MPMX20_04461at 4664.638 kb on + strand, within MPMX20_04461at 4664.643 kb on + strand, within MPMX20_04461at 4664.643 kb on + strand, within MPMX20_04461at 4664.674 kb on + strand, within MPMX20_04461at 4664.679 kb on + strand, within MPMX20_04461at 4664.679 kb on + strand, within MPMX20_04461at 4664.679 kb on + strand, within MPMX20_04461at 4664.687 kb on - strand, within MPMX20_04461at 4664.692 kb on - strand, within MPMX20_04461at 4664.735 kb on + strand, within MPMX20_04461at 4664.765 kb on - strand, within MPMX20_04461at 4664.779 kb on + strand, within MPMX20_04461at 4664.801 kb on + strand, within MPMX20_04461at 4664.987 kb on - strand, within MPMX20_04461at 4664.997 kb on - strand, within MPMX20_04461at 4665.025 kb on + strand, within MPMX20_04461at 4665.025 kb on + strand, within MPMX20_04461at 4665.084 kb on + strand, within MPMX20_04461at 4665.209 kb on + strandat 4665.271 kb on + strandat 4665.366 kb on - strandat 4665.407 kb on + strand, within MPMX20_04462at 4665.468 kb on + strand, within MPMX20_04462at 4665.473 kb on + strand, within MPMX20_04462at 4665.678 kb on - strand, within MPMX20_04462at 4665.724 kb on - strand, within MPMX20_04462at 4665.774 kb on + strand, within MPMX20_04462at 4665.774 kb on + strand, within MPMX20_04462at 4665.868 kb on + strand, within MPMX20_04462at 4665.876 kb on - strand, within MPMX20_04462at 4665.915 kb on - strand, within MPMX20_04462at 4665.915 kb on - strand, within MPMX20_04462at 4665.922 kb on + strand, within MPMX20_04462at 4665.970 kb on - strand, within MPMX20_04462at 4666.145 kb on + strandat 4666.163 kb on - strandat 4666.176 kb on - strandat 4666.182 kb on + strandat 4666.190 kb on - strandat 4666.213 kb on + strandat 4666.301 kb on + strandat 4666.319 kb on - strandat 4666.330 kb on + strandat 4666.360 kb on - strandat 4666.382 kb on - strandat 4666.440 kb on + strandat 4666.464 kb on - strandat 4666.615 kb on - strandat 4666.625 kb on - strandat 4666.667 kb on + strandat 4666.719 kb on - strandat 4666.799 kb on + strandat 4666.816 kb on + strand, within MPMX20_04463at 4666.820 kb on + strand, within MPMX20_04463at 4666.844 kb on - strand, within MPMX20_04463at 4666.844 kb on - strand, within MPMX20_04463at 4666.871 kb on + strand, within MPMX20_04463at 4666.887 kb on - strand, within MPMX20_04463at 4666.897 kb on - strand, within MPMX20_04463at 4666.994 kb on - strand, within MPMX20_04463at 4667.031 kb on - strand, within MPMX20_04463at 4667.054 kb on + strand, within MPMX20_04463at 4667.054 kb on + strand, within MPMX20_04463at 4667.062 kb on - strand, within MPMX20_04463at 4667.091 kb on + strand, within MPMX20_04463at 4667.114 kb on - strand, within MPMX20_04463

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine (N)
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4,664,282 - +0.0
4,664,365 + +0.4
4,664,380 - -1.6
4,664,380 - +0.1
4,664,387 - -0.3
4,664,455 - MPMX20_04461 0.13 +0.3
4,664,503 - MPMX20_04461 0.18 +0.7
4,664,511 + MPMX20_04461 0.19 +1.4
4,664,513 - MPMX20_04461 0.19 -1.6
4,664,556 + MPMX20_04461 0.24 -0.1
4,664,572 + MPMX20_04461 0.26 +0.4
4,664,584 + MPMX20_04461 0.27 +0.3
4,664,614 - MPMX20_04461 0.30 +1.4
4,664,614 - MPMX20_04461 0.30 -1.4
4,664,638 + MPMX20_04461 0.33 +0.2
4,664,643 + MPMX20_04461 0.34 -1.1
4,664,643 + MPMX20_04461 0.34 +0.1
4,664,674 + MPMX20_04461 0.37 +0.6
4,664,679 + MPMX20_04461 0.38 -1.1
4,664,679 + MPMX20_04461 0.38 +1.4
4,664,679 + MPMX20_04461 0.38 -2.9
4,664,687 - MPMX20_04461 0.38 -0.4
4,664,692 - MPMX20_04461 0.39 -0.9
4,664,735 + MPMX20_04461 0.44 -0.6
4,664,765 - MPMX20_04461 0.47 -1.6
4,664,779 + MPMX20_04461 0.49 +0.1
4,664,801 + MPMX20_04461 0.51 +0.2
4,664,987 - MPMX20_04461 0.72 +0.8
4,664,997 - MPMX20_04461 0.73 +0.8
4,665,025 + MPMX20_04461 0.76 -0.2
4,665,025 + MPMX20_04461 0.76 -0.4
4,665,084 + MPMX20_04461 0.83 -1.7
4,665,209 + +0.4
4,665,271 + +0.1
4,665,366 - +0.1
4,665,407 + MPMX20_04462 0.13 +2.4
4,665,468 + MPMX20_04462 0.20 -0.2
4,665,473 + MPMX20_04462 0.20 +0.2
4,665,678 - MPMX20_04462 0.42 +0.0
4,665,724 - MPMX20_04462 0.47 +0.8
4,665,774 + MPMX20_04462 0.52 -0.8
4,665,774 + MPMX20_04462 0.52 +0.9
4,665,868 + MPMX20_04462 0.62 +1.7
4,665,876 - MPMX20_04462 0.63 -1.1
4,665,915 - MPMX20_04462 0.67 -0.6
4,665,915 - MPMX20_04462 0.67 -0.6
4,665,922 + MPMX20_04462 0.67 -0.5
4,665,970 - MPMX20_04462 0.72 +2.4
4,666,145 + -0.1
4,666,163 - -1.4
4,666,176 - -1.1
4,666,182 + -1.4
4,666,190 - -0.1
4,666,213 + +0.2
4,666,301 + -0.8
4,666,319 - -2.4
4,666,330 + -0.6
4,666,360 - +0.6
4,666,382 - -0.8
4,666,440 + +0.9
4,666,464 - -0.9
4,666,615 - +0.6
4,666,625 - -1.9
4,666,667 + -0.5
4,666,719 - +0.2
4,666,799 + -0.6
4,666,816 + MPMX20_04463 0.10 -0.3
4,666,820 + MPMX20_04463 0.11 -3.1
4,666,844 - MPMX20_04463 0.12 -0.2
4,666,844 - MPMX20_04463 0.12 -0.2
4,666,871 + MPMX20_04463 0.13 -2.2
4,666,887 - MPMX20_04463 0.14 -0.8
4,666,897 - MPMX20_04463 0.14 -2.2
4,666,994 - MPMX20_04463 0.19 -1.6
4,667,031 - MPMX20_04463 0.20 +0.4
4,667,054 + MPMX20_04463 0.21 -0.6
4,667,054 + MPMX20_04463 0.21 -1.4
4,667,062 - MPMX20_04463 0.22 +1.4
4,667,091 + MPMX20_04463 0.23 -1.6
4,667,114 - MPMX20_04463 0.24 -0.3

Or see this region's nucleotide sequence