Experiment: Cytidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03772 and MPMX20_03773 are separated by 127 nucleotides MPMX20_03773 and MPMX20_03774 are separated by 47 nucleotides MPMX20_03774 and MPMX20_03775 are separated by 91 nucleotides
MPMX20_03772: MPMX20_03772 - Ribose-5-phosphate isomerase A, at 3,975,405 to 3,976,064
_03772
MPMX20_03773: MPMX20_03773 - HTH-type transcriptional regulator ArgP, at 3,976,192 to 3,977,085
_03773
MPMX20_03774: MPMX20_03774 - 26 kDa periplasmic immunogenic protein, at 3,977,133 to 3,977,873
_03774
MPMX20_03775: MPMX20_03775 - Arginine exporter protein ArgO, at 3,977,965 to 3,978,600
_03775
Position (kb)
3976
3977
3978 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3975.383 kb on + strand at 3975.388 kb on + strand at 3975.393 kb on + strand at 3975.401 kb on - strand at 3975.425 kb on - strand at 3976.206 kb on + strand at 3976.214 kb on - strand at 3976.214 kb on - strand at 3976.245 kb on + strand at 3976.280 kb on - strand at 3976.300 kb on - strand, within MPMX20_03773 at 3976.300 kb on - strand, within MPMX20_03773 at 3976.360 kb on - strand, within MPMX20_03773 at 3976.387 kb on - strand, within MPMX20_03773 at 3976.414 kb on - strand, within MPMX20_03773 at 3976.414 kb on - strand, within MPMX20_03773 at 3976.414 kb on - strand, within MPMX20_03773 at 3976.432 kb on - strand, within MPMX20_03773 at 3976.459 kb on - strand, within MPMX20_03773 at 3976.459 kb on - strand, within MPMX20_03773 at 3976.541 kb on + strand, within MPMX20_03773 at 3976.666 kb on - strand, within MPMX20_03773 at 3976.749 kb on + strand, within MPMX20_03773 at 3977.060 kb on + strand at 3977.060 kb on + strand at 3977.068 kb on - strand at 3977.068 kb on - strand at 3977.079 kb on + strand at 3977.108 kb on - strand at 3977.196 kb on + strand at 3977.240 kb on + strand, within MPMX20_03774 at 3977.280 kb on + strand, within MPMX20_03774 at 3977.320 kb on + strand, within MPMX20_03774 at 3977.343 kb on - strand, within MPMX20_03774 at 3977.525 kb on + strand, within MPMX20_03774 at 3977.533 kb on - strand, within MPMX20_03774 at 3977.533 kb on - strand, within MPMX20_03774 at 3977.611 kb on - strand, within MPMX20_03774 at 3977.611 kb on - strand, within MPMX20_03774 at 3977.632 kb on + strand, within MPMX20_03774 at 3977.836 kb on - strand at 3977.928 kb on - strand at 3977.935 kb on - strand at 3977.949 kb on + strand at 3978.009 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine (N) remove 3,975,383 + -0.3 3,975,388 + -0.2 3,975,393 + +1.1 3,975,401 - -0.2 3,975,425 - -0.1 3,976,206 + -0.2 3,976,214 - -1.3 3,976,214 - -1.6 3,976,245 + -1.2 3,976,280 - +0.4 3,976,300 - MPMX20_03773 0.12 -3.6 3,976,300 - MPMX20_03773 0.12 -1.9 3,976,360 - MPMX20_03773 0.19 +0.2 3,976,387 - MPMX20_03773 0.22 -1.0 3,976,414 - MPMX20_03773 0.25 -1.7 3,976,414 - MPMX20_03773 0.25 +1.2 3,976,414 - MPMX20_03773 0.25 +0.1 3,976,432 - MPMX20_03773 0.27 +1.0 3,976,459 - MPMX20_03773 0.30 -0.8 3,976,459 - MPMX20_03773 0.30 -0.5 3,976,541 + MPMX20_03773 0.39 -1.8 3,976,666 - MPMX20_03773 0.53 -1.0 3,976,749 + MPMX20_03773 0.62 +1.9 3,977,060 + +0.1 3,977,060 + -0.7 3,977,068 - -0.5 3,977,068 - +0.1 3,977,079 + -0.0 3,977,108 - +0.6 3,977,196 + +1.2 3,977,240 + MPMX20_03774 0.14 +0.0 3,977,280 + MPMX20_03774 0.20 +1.1 3,977,320 + MPMX20_03774 0.25 -0.1 3,977,343 - MPMX20_03774 0.28 -0.0 3,977,525 + MPMX20_03774 0.53 -0.9 3,977,533 - MPMX20_03774 0.54 +2.3 3,977,533 - MPMX20_03774 0.54 -0.2 3,977,611 - MPMX20_03774 0.65 -0.2 3,977,611 - MPMX20_03774 0.65 +1.3 3,977,632 + MPMX20_03774 0.67 -0.5 3,977,836 - +0.5 3,977,928 - +0.5 3,977,935 - +0.8 3,977,949 + +2.1 3,978,009 + -0.2
Or see this region's nucleotide sequence