Experiment: Cytidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03652 and MPMX20_03653 are separated by 69 nucleotides MPMX20_03653 and MPMX20_03654 are separated by 51 nucleotides
MPMX20_03652: MPMX20_03652 - Nucleoside triphosphate pyrophosphohydrolase, at 3,842,449 to 3,843,240
_03652
MPMX20_03653: MPMX20_03653 - GTP pyrophosphokinase, at 3,843,310 to 3,845,541
_03653
MPMX20_03654: MPMX20_03654 - 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD, at 3,845,593 to 3,846,891
_03654
Position (kb)
3843
3844
3845
3846 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 3842.344 kb on + strand at 3842.344 kb on + strand at 3842.497 kb on - strand at 3842.520 kb on + strand at 3842.573 kb on + strand, within MPMX20_03652 at 3842.573 kb on + strand, within MPMX20_03652 at 3842.638 kb on - strand, within MPMX20_03652 at 3842.703 kb on - strand, within MPMX20_03652 at 3842.703 kb on - strand, within MPMX20_03652 at 3842.759 kb on - strand, within MPMX20_03652 at 3842.780 kb on + strand, within MPMX20_03652 at 3842.882 kb on + strand, within MPMX20_03652 at 3842.892 kb on + strand, within MPMX20_03652 at 3842.900 kb on - strand, within MPMX20_03652 at 3842.984 kb on + strand, within MPMX20_03652 at 3843.045 kb on - strand, within MPMX20_03652 at 3843.111 kb on + strand, within MPMX20_03652 at 3843.119 kb on - strand, within MPMX20_03652 at 3843.122 kb on - strand, within MPMX20_03652 at 3843.126 kb on + strand, within MPMX20_03652 at 3843.126 kb on + strand, within MPMX20_03652 at 3843.126 kb on + strand, within MPMX20_03652 at 3843.134 kb on - strand, within MPMX20_03652 at 3843.204 kb on - strand at 3843.250 kb on - strand at 3843.250 kb on - strand at 3843.250 kb on - strand at 3843.282 kb on + strand at 3843.282 kb on + strand at 3843.284 kb on - strand at 3843.285 kb on - strand at 3843.300 kb on - strand at 3843.304 kb on - strand at 3843.384 kb on - strand at 3843.384 kb on - strand at 3843.427 kb on - strand at 3843.464 kb on + strand at 3843.464 kb on + strand at 3843.505 kb on - strand at 3843.513 kb on - strand at 3843.580 kb on - strand, within MPMX20_03653 at 3843.616 kb on - strand, within MPMX20_03653 at 3843.624 kb on + strand, within MPMX20_03653 at 3843.788 kb on - strand, within MPMX20_03653 at 3843.821 kb on + strand, within MPMX20_03653 at 3843.829 kb on - strand, within MPMX20_03653 at 3843.847 kb on - strand, within MPMX20_03653 at 3843.890 kb on - strand, within MPMX20_03653 at 3843.972 kb on + strand, within MPMX20_03653 at 3843.979 kb on - strand, within MPMX20_03653 at 3844.112 kb on + strand, within MPMX20_03653 at 3844.115 kb on - strand, within MPMX20_03653 at 3844.133 kb on + strand, within MPMX20_03653 at 3844.141 kb on - strand, within MPMX20_03653 at 3844.157 kb on + strand, within MPMX20_03653 at 3844.187 kb on - strand, within MPMX20_03653 at 3844.190 kb on - strand, within MPMX20_03653 at 3844.195 kb on + strand, within MPMX20_03653 at 3844.239 kb on - strand, within MPMX20_03653 at 3844.490 kb on + strand, within MPMX20_03653 at 3844.498 kb on - strand, within MPMX20_03653 at 3844.603 kb on - strand, within MPMX20_03653 at 3844.639 kb on + strand, within MPMX20_03653 at 3844.648 kb on + strand, within MPMX20_03653 at 3844.666 kb on - strand, within MPMX20_03653 at 3844.673 kb on + strand, within MPMX20_03653 at 3844.700 kb on - strand, within MPMX20_03653 at 3844.769 kb on + strand, within MPMX20_03653 at 3844.777 kb on - strand, within MPMX20_03653 at 3844.797 kb on - strand, within MPMX20_03653 at 3844.797 kb on - strand, within MPMX20_03653 at 3844.797 kb on - strand, within MPMX20_03653 at 3844.798 kb on - strand, within MPMX20_03653 at 3844.834 kb on - strand, within MPMX20_03653 at 3844.851 kb on + strand, within MPMX20_03653 at 3844.859 kb on - strand, within MPMX20_03653 at 3844.859 kb on - strand, within MPMX20_03653 at 3844.859 kb on - strand, within MPMX20_03653 at 3844.859 kb on - strand, within MPMX20_03653 at 3844.931 kb on + strand, within MPMX20_03653 at 3844.945 kb on - strand, within MPMX20_03653 at 3844.979 kb on - strand, within MPMX20_03653 at 3845.000 kb on - strand, within MPMX20_03653 at 3845.114 kb on + strand, within MPMX20_03653 at 3845.151 kb on + strand, within MPMX20_03653 at 3845.159 kb on - strand, within MPMX20_03653 at 3845.180 kb on + strand, within MPMX20_03653 at 3845.180 kb on + strand, within MPMX20_03653 at 3845.180 kb on + strand, within MPMX20_03653 at 3845.188 kb on - strand, within MPMX20_03653 at 3845.188 kb on - strand, within MPMX20_03653 at 3845.221 kb on + strand, within MPMX20_03653 at 3845.249 kb on - strand, within MPMX20_03653 at 3845.285 kb on - strand, within MPMX20_03653 at 3845.335 kb on - strand at 3845.341 kb on + strand at 3845.347 kb on + strand at 3845.355 kb on - strand at 3845.358 kb on + strand at 3845.366 kb on - strand at 3845.382 kb on - strand at 3845.398 kb on + strand at 3845.398 kb on + strand at 3845.450 kb on - strand at 3845.543 kb on + strand at 3845.546 kb on - strand at 3845.558 kb on - strand at 3845.558 kb on - strand at 3845.591 kb on + strand at 3845.591 kb on + strand at 3845.591 kb on + strand at 3845.591 kb on + strand at 3845.599 kb on - strand at 3845.599 kb on - strand at 3845.618 kb on - strand at 3845.686 kb on + strand at 3845.686 kb on + strand at 3845.694 kb on - strand at 3845.694 kb on - strand at 3845.732 kb on + strand, within MPMX20_03654 at 3845.747 kb on - strand, within MPMX20_03654 at 3845.780 kb on - strand, within MPMX20_03654 at 3845.792 kb on - strand, within MPMX20_03654 at 3845.824 kb on + strand, within MPMX20_03654 at 3845.834 kb on + strand, within MPMX20_03654 at 3845.899 kb on + strand, within MPMX20_03654 at 3845.914 kb on + strand, within MPMX20_03654 at 3845.945 kb on - strand, within MPMX20_03654 at 3845.954 kb on + strand, within MPMX20_03654 at 3845.963 kb on - strand, within MPMX20_03654 at 3845.978 kb on + strand, within MPMX20_03654 at 3845.978 kb on + strand, within MPMX20_03654 at 3845.978 kb on + strand, within MPMX20_03654 at 3845.978 kb on + strand, within MPMX20_03654 at 3845.978 kb on + strand, within MPMX20_03654 at 3845.986 kb on - strand, within MPMX20_03654 at 3845.986 kb on - strand, within MPMX20_03654 at 3846.013 kb on - strand, within MPMX20_03654 at 3846.015 kb on + strand, within MPMX20_03654 at 3846.015 kb on + strand, within MPMX20_03654 at 3846.034 kb on + strand, within MPMX20_03654 at 3846.135 kb on - strand, within MPMX20_03654 at 3846.149 kb on - strand, within MPMX20_03654 at 3846.154 kb on - strand, within MPMX20_03654 at 3846.169 kb on - strand, within MPMX20_03654 at 3846.269 kb on + strand, within MPMX20_03654 at 3846.269 kb on + strand, within MPMX20_03654 at 3846.302 kb on + strand, within MPMX20_03654 at 3846.361 kb on + strand, within MPMX20_03654 at 3846.399 kb on + strand, within MPMX20_03654 at 3846.478 kb on - strand, within MPMX20_03654 at 3846.489 kb on + strand, within MPMX20_03654 at 3846.515 kb on + strand, within MPMX20_03654 at 3846.515 kb on + strand, within MPMX20_03654 at 3846.515 kb on + strand, within MPMX20_03654 at 3846.515 kb on + strand, within MPMX20_03654 at 3846.515 kb on + strand, within MPMX20_03654 at 3846.515 kb on + strand, within MPMX20_03654 at 3846.515 kb on + strand, within MPMX20_03654 at 3846.515 kb on + strand, within MPMX20_03654 at 3846.523 kb on - strand, within MPMX20_03654 at 3846.523 kb on - strand, within MPMX20_03654 at 3846.523 kb on - strand, within MPMX20_03654 at 3846.523 kb on - strand, within MPMX20_03654 at 3846.523 kb on - strand, within MPMX20_03654 at 3846.523 kb on - strand, within MPMX20_03654 at 3846.523 kb on - strand, within MPMX20_03654 at 3846.523 kb on - strand, within MPMX20_03654 at 3846.523 kb on - strand, within MPMX20_03654 at 3846.523 kb on - strand, within MPMX20_03654 at 3846.523 kb on - strand, within MPMX20_03654
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine (N) remove 3,842,344 + +0.0 3,842,344 + -3.2 3,842,497 - +0.0 3,842,520 + -0.1 3,842,573 + MPMX20_03652 0.16 +0.6 3,842,573 + MPMX20_03652 0.16 -0.8 3,842,638 - MPMX20_03652 0.24 -0.7 3,842,703 - MPMX20_03652 0.32 +0.4 3,842,703 - MPMX20_03652 0.32 +0.2 3,842,759 - MPMX20_03652 0.39 -0.7 3,842,780 + MPMX20_03652 0.42 +0.2 3,842,882 + MPMX20_03652 0.55 -0.5 3,842,892 + MPMX20_03652 0.56 +1.3 3,842,900 - MPMX20_03652 0.57 -1.1 3,842,984 + MPMX20_03652 0.68 -0.1 3,843,045 - MPMX20_03652 0.75 +0.3 3,843,111 + MPMX20_03652 0.84 +0.8 3,843,119 - MPMX20_03652 0.85 -0.8 3,843,122 - MPMX20_03652 0.85 -1.1 3,843,126 + MPMX20_03652 0.85 -0.4 3,843,126 + MPMX20_03652 0.85 -2.3 3,843,126 + MPMX20_03652 0.85 -0.1 3,843,134 - MPMX20_03652 0.86 +0.0 3,843,204 - -0.9 3,843,250 - +1.1 3,843,250 - +0.1 3,843,250 - -0.4 3,843,282 + -0.0 3,843,282 + -0.2 3,843,284 - +0.9 3,843,285 - -3.1 3,843,300 - -1.3 3,843,304 - -0.3 3,843,384 - -1.7 3,843,384 - -4.2 3,843,427 - +0.5 3,843,464 + -4.0 3,843,464 + -2.7 3,843,505 - -2.2 3,843,513 - -2.9 3,843,580 - MPMX20_03653 0.12 -2.4 3,843,616 - MPMX20_03653 0.14 -2.1 3,843,624 + MPMX20_03653 0.14 -2.1 3,843,788 - MPMX20_03653 0.21 -5.4 3,843,821 + MPMX20_03653 0.23 -4.2 3,843,829 - MPMX20_03653 0.23 -2.9 3,843,847 - MPMX20_03653 0.24 -2.0 3,843,890 - MPMX20_03653 0.26 -3.8 3,843,972 + MPMX20_03653 0.30 -4.4 3,843,979 - MPMX20_03653 0.30 -1.5 3,844,112 + MPMX20_03653 0.36 -4.2 3,844,115 - MPMX20_03653 0.36 -3.6 3,844,133 + MPMX20_03653 0.37 -1.0 3,844,141 - MPMX20_03653 0.37 -2.3 3,844,157 + MPMX20_03653 0.38 -3.6 3,844,187 - MPMX20_03653 0.39 -1.5 3,844,190 - MPMX20_03653 0.39 -4.0 3,844,195 + MPMX20_03653 0.40 -4.4 3,844,239 - MPMX20_03653 0.42 -2.6 3,844,490 + MPMX20_03653 0.53 +0.0 3,844,498 - MPMX20_03653 0.53 -1.7 3,844,603 - MPMX20_03653 0.58 -4.6 3,844,639 + MPMX20_03653 0.60 -1.7 3,844,648 + MPMX20_03653 0.60 -0.5 3,844,666 - MPMX20_03653 0.61 -3.9 3,844,673 + MPMX20_03653 0.61 -2.0 3,844,700 - MPMX20_03653 0.62 -0.8 3,844,769 + MPMX20_03653 0.65 -1.0 3,844,777 - MPMX20_03653 0.66 -3.9 3,844,797 - MPMX20_03653 0.67 -1.3 3,844,797 - MPMX20_03653 0.67 -3.9 3,844,797 - MPMX20_03653 0.67 -4.2 3,844,798 - MPMX20_03653 0.67 -0.1 3,844,834 - MPMX20_03653 0.68 -2.9 3,844,851 + MPMX20_03653 0.69 -4.2 3,844,859 - MPMX20_03653 0.69 -4.5 3,844,859 - MPMX20_03653 0.69 -3.0 3,844,859 - MPMX20_03653 0.69 -3.4 3,844,859 - MPMX20_03653 0.69 -2.0 3,844,931 + MPMX20_03653 0.73 -3.3 3,844,945 - MPMX20_03653 0.73 -2.5 3,844,979 - MPMX20_03653 0.75 -2.9 3,845,000 - MPMX20_03653 0.76 -3.1 3,845,114 + MPMX20_03653 0.81 -3.5 3,845,151 + MPMX20_03653 0.82 -1.7 3,845,159 - MPMX20_03653 0.83 -4.3 3,845,180 + MPMX20_03653 0.84 -2.7 3,845,180 + MPMX20_03653 0.84 -3.7 3,845,180 + MPMX20_03653 0.84 -2.9 3,845,188 - MPMX20_03653 0.84 -0.3 3,845,188 - MPMX20_03653 0.84 -2.3 3,845,221 + MPMX20_03653 0.86 -4.2 3,845,249 - MPMX20_03653 0.87 +0.5 3,845,285 - MPMX20_03653 0.88 -3.4 3,845,335 - -3.5 3,845,341 + -3.3 3,845,347 + -3.4 3,845,355 - -0.8 3,845,358 + -0.3 3,845,366 - -3.3 3,845,382 - -0.8 3,845,398 + -0.5 3,845,398 + -2.0 3,845,450 - -1.7 3,845,543 + -0.3 3,845,546 - -3.1 3,845,558 - -0.3 3,845,558 - -0.6 3,845,591 + -1.8 3,845,591 + -1.4 3,845,591 + -0.2 3,845,591 + -0.2 3,845,599 - -0.4 3,845,599 - -0.4 3,845,618 - -1.3 3,845,686 + +1.9 3,845,686 + +0.6 3,845,694 - -0.5 3,845,694 - -3.0 3,845,732 + MPMX20_03654 0.11 -0.5 3,845,747 - MPMX20_03654 0.12 +0.6 3,845,780 - MPMX20_03654 0.14 -0.1 3,845,792 - MPMX20_03654 0.15 +0.4 3,845,824 + MPMX20_03654 0.18 -1.5 3,845,834 + MPMX20_03654 0.19 -0.1 3,845,899 + MPMX20_03654 0.24 -0.4 3,845,914 + MPMX20_03654 0.25 +0.0 3,845,945 - MPMX20_03654 0.27 +0.0 3,845,954 + MPMX20_03654 0.28 -0.6 3,845,963 - MPMX20_03654 0.28 -1.1 3,845,978 + MPMX20_03654 0.30 +0.1 3,845,978 + MPMX20_03654 0.30 -1.9 3,845,978 + MPMX20_03654 0.30 +1.5 3,845,978 + MPMX20_03654 0.30 -0.4 3,845,978 + MPMX20_03654 0.30 -1.8 3,845,986 - MPMX20_03654 0.30 -0.1 3,845,986 - MPMX20_03654 0.30 +0.3 3,846,013 - MPMX20_03654 0.32 +0.3 3,846,015 + MPMX20_03654 0.32 -1.0 3,846,015 + MPMX20_03654 0.32 -0.9 3,846,034 + MPMX20_03654 0.34 -0.4 3,846,135 - MPMX20_03654 0.42 -1.9 3,846,149 - MPMX20_03654 0.43 +0.1 3,846,154 - MPMX20_03654 0.43 +1.4 3,846,169 - MPMX20_03654 0.44 +0.3 3,846,269 + MPMX20_03654 0.52 +0.1 3,846,269 + MPMX20_03654 0.52 +0.4 3,846,302 + MPMX20_03654 0.55 +0.3 3,846,361 + MPMX20_03654 0.59 -0.6 3,846,399 + MPMX20_03654 0.62 +0.5 3,846,478 - MPMX20_03654 0.68 -0.1 3,846,489 + MPMX20_03654 0.69 -0.4 3,846,515 + MPMX20_03654 0.71 -1.8 3,846,515 + MPMX20_03654 0.71 -0.4 3,846,515 + MPMX20_03654 0.71 -0.1 3,846,515 + MPMX20_03654 0.71 -1.4 3,846,515 + MPMX20_03654 0.71 +0.2 3,846,515 + MPMX20_03654 0.71 -0.2 3,846,515 + MPMX20_03654 0.71 +0.6 3,846,515 + MPMX20_03654 0.71 -1.3 3,846,523 - MPMX20_03654 0.72 +1.5 3,846,523 - MPMX20_03654 0.72 -1.9 3,846,523 - MPMX20_03654 0.72 -1.6 3,846,523 - MPMX20_03654 0.72 +0.6 3,846,523 - MPMX20_03654 0.72 +1.2 3,846,523 - MPMX20_03654 0.72 -0.3 3,846,523 - MPMX20_03654 0.72 +0.4 3,846,523 - MPMX20_03654 0.72 +0.0 3,846,523 - MPMX20_03654 0.72 -0.5 3,846,523 - MPMX20_03654 0.72 -0.1 3,846,523 - MPMX20_03654 0.72 +0.1
Or see this region's nucleotide sequence