Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03653

Experiment: Cytidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03652 and MPMX20_03653 are separated by 69 nucleotidesMPMX20_03653 and MPMX20_03654 are separated by 51 nucleotides MPMX20_03652: MPMX20_03652 - Nucleoside triphosphate pyrophosphohydrolase, at 3,842,449 to 3,843,240 _03652 MPMX20_03653: MPMX20_03653 - GTP pyrophosphokinase, at 3,843,310 to 3,845,541 _03653 MPMX20_03654: MPMX20_03654 - 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD, at 3,845,593 to 3,846,891 _03654 Position (kb) 3843 3844 3845 3846Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 3842.344 kb on + strandat 3842.344 kb on + strandat 3842.497 kb on - strandat 3842.520 kb on + strandat 3842.573 kb on + strand, within MPMX20_03652at 3842.573 kb on + strand, within MPMX20_03652at 3842.638 kb on - strand, within MPMX20_03652at 3842.703 kb on - strand, within MPMX20_03652at 3842.703 kb on - strand, within MPMX20_03652at 3842.759 kb on - strand, within MPMX20_03652at 3842.780 kb on + strand, within MPMX20_03652at 3842.882 kb on + strand, within MPMX20_03652at 3842.892 kb on + strand, within MPMX20_03652at 3842.900 kb on - strand, within MPMX20_03652at 3842.984 kb on + strand, within MPMX20_03652at 3843.045 kb on - strand, within MPMX20_03652at 3843.111 kb on + strand, within MPMX20_03652at 3843.119 kb on - strand, within MPMX20_03652at 3843.122 kb on - strand, within MPMX20_03652at 3843.126 kb on + strand, within MPMX20_03652at 3843.126 kb on + strand, within MPMX20_03652at 3843.126 kb on + strand, within MPMX20_03652at 3843.134 kb on - strand, within MPMX20_03652at 3843.204 kb on - strandat 3843.250 kb on - strandat 3843.250 kb on - strandat 3843.250 kb on - strandat 3843.282 kb on + strandat 3843.282 kb on + strandat 3843.284 kb on - strandat 3843.285 kb on - strandat 3843.300 kb on - strandat 3843.304 kb on - strandat 3843.384 kb on - strandat 3843.384 kb on - strandat 3843.427 kb on - strandat 3843.464 kb on + strandat 3843.464 kb on + strandat 3843.505 kb on - strandat 3843.513 kb on - strandat 3843.580 kb on - strand, within MPMX20_03653at 3843.616 kb on - strand, within MPMX20_03653at 3843.624 kb on + strand, within MPMX20_03653at 3843.788 kb on - strand, within MPMX20_03653at 3843.821 kb on + strand, within MPMX20_03653at 3843.829 kb on - strand, within MPMX20_03653at 3843.847 kb on - strand, within MPMX20_03653at 3843.890 kb on - strand, within MPMX20_03653at 3843.972 kb on + strand, within MPMX20_03653at 3843.979 kb on - strand, within MPMX20_03653at 3844.112 kb on + strand, within MPMX20_03653at 3844.115 kb on - strand, within MPMX20_03653at 3844.133 kb on + strand, within MPMX20_03653at 3844.141 kb on - strand, within MPMX20_03653at 3844.157 kb on + strand, within MPMX20_03653at 3844.187 kb on - strand, within MPMX20_03653at 3844.190 kb on - strand, within MPMX20_03653at 3844.195 kb on + strand, within MPMX20_03653at 3844.239 kb on - strand, within MPMX20_03653at 3844.490 kb on + strand, within MPMX20_03653at 3844.498 kb on - strand, within MPMX20_03653at 3844.603 kb on - strand, within MPMX20_03653at 3844.639 kb on + strand, within MPMX20_03653at 3844.648 kb on + strand, within MPMX20_03653at 3844.666 kb on - strand, within MPMX20_03653at 3844.673 kb on + strand, within MPMX20_03653at 3844.700 kb on - strand, within MPMX20_03653at 3844.769 kb on + strand, within MPMX20_03653at 3844.777 kb on - strand, within MPMX20_03653at 3844.797 kb on - strand, within MPMX20_03653at 3844.797 kb on - strand, within MPMX20_03653at 3844.797 kb on - strand, within MPMX20_03653at 3844.798 kb on - strand, within MPMX20_03653at 3844.834 kb on - strand, within MPMX20_03653at 3844.851 kb on + strand, within MPMX20_03653at 3844.859 kb on - strand, within MPMX20_03653at 3844.859 kb on - strand, within MPMX20_03653at 3844.859 kb on - strand, within MPMX20_03653at 3844.859 kb on - strand, within MPMX20_03653at 3844.931 kb on + strand, within MPMX20_03653at 3844.945 kb on - strand, within MPMX20_03653at 3844.979 kb on - strand, within MPMX20_03653at 3845.000 kb on - strand, within MPMX20_03653at 3845.114 kb on + strand, within MPMX20_03653at 3845.151 kb on + strand, within MPMX20_03653at 3845.159 kb on - strand, within MPMX20_03653at 3845.180 kb on + strand, within MPMX20_03653at 3845.180 kb on + strand, within MPMX20_03653at 3845.180 kb on + strand, within MPMX20_03653at 3845.188 kb on - strand, within MPMX20_03653at 3845.188 kb on - strand, within MPMX20_03653at 3845.221 kb on + strand, within MPMX20_03653at 3845.249 kb on - strand, within MPMX20_03653at 3845.285 kb on - strand, within MPMX20_03653at 3845.335 kb on - strandat 3845.341 kb on + strandat 3845.347 kb on + strandat 3845.355 kb on - strandat 3845.358 kb on + strandat 3845.366 kb on - strandat 3845.382 kb on - strandat 3845.398 kb on + strandat 3845.398 kb on + strandat 3845.450 kb on - strandat 3845.543 kb on + strandat 3845.546 kb on - strandat 3845.558 kb on - strandat 3845.558 kb on - strandat 3845.591 kb on + strandat 3845.591 kb on + strandat 3845.591 kb on + strandat 3845.591 kb on + strandat 3845.599 kb on - strandat 3845.599 kb on - strandat 3845.618 kb on - strandat 3845.686 kb on + strandat 3845.686 kb on + strandat 3845.694 kb on - strandat 3845.694 kb on - strandat 3845.732 kb on + strand, within MPMX20_03654at 3845.747 kb on - strand, within MPMX20_03654at 3845.780 kb on - strand, within MPMX20_03654at 3845.792 kb on - strand, within MPMX20_03654at 3845.824 kb on + strand, within MPMX20_03654at 3845.834 kb on + strand, within MPMX20_03654at 3845.899 kb on + strand, within MPMX20_03654at 3845.914 kb on + strand, within MPMX20_03654at 3845.945 kb on - strand, within MPMX20_03654at 3845.954 kb on + strand, within MPMX20_03654at 3845.963 kb on - strand, within MPMX20_03654at 3845.978 kb on + strand, within MPMX20_03654at 3845.978 kb on + strand, within MPMX20_03654at 3845.978 kb on + strand, within MPMX20_03654at 3845.978 kb on + strand, within MPMX20_03654at 3845.978 kb on + strand, within MPMX20_03654at 3845.986 kb on - strand, within MPMX20_03654at 3845.986 kb on - strand, within MPMX20_03654at 3846.013 kb on - strand, within MPMX20_03654at 3846.015 kb on + strand, within MPMX20_03654at 3846.015 kb on + strand, within MPMX20_03654at 3846.034 kb on + strand, within MPMX20_03654at 3846.135 kb on - strand, within MPMX20_03654at 3846.149 kb on - strand, within MPMX20_03654at 3846.154 kb on - strand, within MPMX20_03654at 3846.169 kb on - strand, within MPMX20_03654at 3846.269 kb on + strand, within MPMX20_03654at 3846.269 kb on + strand, within MPMX20_03654at 3846.302 kb on + strand, within MPMX20_03654at 3846.361 kb on + strand, within MPMX20_03654at 3846.399 kb on + strand, within MPMX20_03654at 3846.478 kb on - strand, within MPMX20_03654at 3846.489 kb on + strand, within MPMX20_03654at 3846.515 kb on + strand, within MPMX20_03654at 3846.515 kb on + strand, within MPMX20_03654at 3846.515 kb on + strand, within MPMX20_03654at 3846.515 kb on + strand, within MPMX20_03654at 3846.515 kb on + strand, within MPMX20_03654at 3846.515 kb on + strand, within MPMX20_03654at 3846.515 kb on + strand, within MPMX20_03654at 3846.515 kb on + strand, within MPMX20_03654at 3846.523 kb on - strand, within MPMX20_03654at 3846.523 kb on - strand, within MPMX20_03654at 3846.523 kb on - strand, within MPMX20_03654at 3846.523 kb on - strand, within MPMX20_03654at 3846.523 kb on - strand, within MPMX20_03654at 3846.523 kb on - strand, within MPMX20_03654at 3846.523 kb on - strand, within MPMX20_03654at 3846.523 kb on - strand, within MPMX20_03654at 3846.523 kb on - strand, within MPMX20_03654at 3846.523 kb on - strand, within MPMX20_03654at 3846.523 kb on - strand, within MPMX20_03654

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine (N)
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3,842,344 + +0.0
3,842,344 + -3.2
3,842,497 - +0.0
3,842,520 + -0.1
3,842,573 + MPMX20_03652 0.16 +0.6
3,842,573 + MPMX20_03652 0.16 -0.8
3,842,638 - MPMX20_03652 0.24 -0.7
3,842,703 - MPMX20_03652 0.32 +0.4
3,842,703 - MPMX20_03652 0.32 +0.2
3,842,759 - MPMX20_03652 0.39 -0.7
3,842,780 + MPMX20_03652 0.42 +0.2
3,842,882 + MPMX20_03652 0.55 -0.5
3,842,892 + MPMX20_03652 0.56 +1.3
3,842,900 - MPMX20_03652 0.57 -1.1
3,842,984 + MPMX20_03652 0.68 -0.1
3,843,045 - MPMX20_03652 0.75 +0.3
3,843,111 + MPMX20_03652 0.84 +0.8
3,843,119 - MPMX20_03652 0.85 -0.8
3,843,122 - MPMX20_03652 0.85 -1.1
3,843,126 + MPMX20_03652 0.85 -0.4
3,843,126 + MPMX20_03652 0.85 -2.3
3,843,126 + MPMX20_03652 0.85 -0.1
3,843,134 - MPMX20_03652 0.86 +0.0
3,843,204 - -0.9
3,843,250 - +1.1
3,843,250 - +0.1
3,843,250 - -0.4
3,843,282 + -0.0
3,843,282 + -0.2
3,843,284 - +0.9
3,843,285 - -3.1
3,843,300 - -1.3
3,843,304 - -0.3
3,843,384 - -1.7
3,843,384 - -4.2
3,843,427 - +0.5
3,843,464 + -4.0
3,843,464 + -2.7
3,843,505 - -2.2
3,843,513 - -2.9
3,843,580 - MPMX20_03653 0.12 -2.4
3,843,616 - MPMX20_03653 0.14 -2.1
3,843,624 + MPMX20_03653 0.14 -2.1
3,843,788 - MPMX20_03653 0.21 -5.4
3,843,821 + MPMX20_03653 0.23 -4.2
3,843,829 - MPMX20_03653 0.23 -2.9
3,843,847 - MPMX20_03653 0.24 -2.0
3,843,890 - MPMX20_03653 0.26 -3.8
3,843,972 + MPMX20_03653 0.30 -4.4
3,843,979 - MPMX20_03653 0.30 -1.5
3,844,112 + MPMX20_03653 0.36 -4.2
3,844,115 - MPMX20_03653 0.36 -3.6
3,844,133 + MPMX20_03653 0.37 -1.0
3,844,141 - MPMX20_03653 0.37 -2.3
3,844,157 + MPMX20_03653 0.38 -3.6
3,844,187 - MPMX20_03653 0.39 -1.5
3,844,190 - MPMX20_03653 0.39 -4.0
3,844,195 + MPMX20_03653 0.40 -4.4
3,844,239 - MPMX20_03653 0.42 -2.6
3,844,490 + MPMX20_03653 0.53 +0.0
3,844,498 - MPMX20_03653 0.53 -1.7
3,844,603 - MPMX20_03653 0.58 -4.6
3,844,639 + MPMX20_03653 0.60 -1.7
3,844,648 + MPMX20_03653 0.60 -0.5
3,844,666 - MPMX20_03653 0.61 -3.9
3,844,673 + MPMX20_03653 0.61 -2.0
3,844,700 - MPMX20_03653 0.62 -0.8
3,844,769 + MPMX20_03653 0.65 -1.0
3,844,777 - MPMX20_03653 0.66 -3.9
3,844,797 - MPMX20_03653 0.67 -1.3
3,844,797 - MPMX20_03653 0.67 -3.9
3,844,797 - MPMX20_03653 0.67 -4.2
3,844,798 - MPMX20_03653 0.67 -0.1
3,844,834 - MPMX20_03653 0.68 -2.9
3,844,851 + MPMX20_03653 0.69 -4.2
3,844,859 - MPMX20_03653 0.69 -4.5
3,844,859 - MPMX20_03653 0.69 -3.0
3,844,859 - MPMX20_03653 0.69 -3.4
3,844,859 - MPMX20_03653 0.69 -2.0
3,844,931 + MPMX20_03653 0.73 -3.3
3,844,945 - MPMX20_03653 0.73 -2.5
3,844,979 - MPMX20_03653 0.75 -2.9
3,845,000 - MPMX20_03653 0.76 -3.1
3,845,114 + MPMX20_03653 0.81 -3.5
3,845,151 + MPMX20_03653 0.82 -1.7
3,845,159 - MPMX20_03653 0.83 -4.3
3,845,180 + MPMX20_03653 0.84 -2.7
3,845,180 + MPMX20_03653 0.84 -3.7
3,845,180 + MPMX20_03653 0.84 -2.9
3,845,188 - MPMX20_03653 0.84 -0.3
3,845,188 - MPMX20_03653 0.84 -2.3
3,845,221 + MPMX20_03653 0.86 -4.2
3,845,249 - MPMX20_03653 0.87 +0.5
3,845,285 - MPMX20_03653 0.88 -3.4
3,845,335 - -3.5
3,845,341 + -3.3
3,845,347 + -3.4
3,845,355 - -0.8
3,845,358 + -0.3
3,845,366 - -3.3
3,845,382 - -0.8
3,845,398 + -0.5
3,845,398 + -2.0
3,845,450 - -1.7
3,845,543 + -0.3
3,845,546 - -3.1
3,845,558 - -0.3
3,845,558 - -0.6
3,845,591 + -1.8
3,845,591 + -1.4
3,845,591 + -0.2
3,845,591 + -0.2
3,845,599 - -0.4
3,845,599 - -0.4
3,845,618 - -1.3
3,845,686 + +1.9
3,845,686 + +0.6
3,845,694 - -0.5
3,845,694 - -3.0
3,845,732 + MPMX20_03654 0.11 -0.5
3,845,747 - MPMX20_03654 0.12 +0.6
3,845,780 - MPMX20_03654 0.14 -0.1
3,845,792 - MPMX20_03654 0.15 +0.4
3,845,824 + MPMX20_03654 0.18 -1.5
3,845,834 + MPMX20_03654 0.19 -0.1
3,845,899 + MPMX20_03654 0.24 -0.4
3,845,914 + MPMX20_03654 0.25 +0.0
3,845,945 - MPMX20_03654 0.27 +0.0
3,845,954 + MPMX20_03654 0.28 -0.6
3,845,963 - MPMX20_03654 0.28 -1.1
3,845,978 + MPMX20_03654 0.30 +0.1
3,845,978 + MPMX20_03654 0.30 -1.9
3,845,978 + MPMX20_03654 0.30 +1.5
3,845,978 + MPMX20_03654 0.30 -0.4
3,845,978 + MPMX20_03654 0.30 -1.8
3,845,986 - MPMX20_03654 0.30 -0.1
3,845,986 - MPMX20_03654 0.30 +0.3
3,846,013 - MPMX20_03654 0.32 +0.3
3,846,015 + MPMX20_03654 0.32 -1.0
3,846,015 + MPMX20_03654 0.32 -0.9
3,846,034 + MPMX20_03654 0.34 -0.4
3,846,135 - MPMX20_03654 0.42 -1.9
3,846,149 - MPMX20_03654 0.43 +0.1
3,846,154 - MPMX20_03654 0.43 +1.4
3,846,169 - MPMX20_03654 0.44 +0.3
3,846,269 + MPMX20_03654 0.52 +0.1
3,846,269 + MPMX20_03654 0.52 +0.4
3,846,302 + MPMX20_03654 0.55 +0.3
3,846,361 + MPMX20_03654 0.59 -0.6
3,846,399 + MPMX20_03654 0.62 +0.5
3,846,478 - MPMX20_03654 0.68 -0.1
3,846,489 + MPMX20_03654 0.69 -0.4
3,846,515 + MPMX20_03654 0.71 -1.8
3,846,515 + MPMX20_03654 0.71 -0.4
3,846,515 + MPMX20_03654 0.71 -0.1
3,846,515 + MPMX20_03654 0.71 -1.4
3,846,515 + MPMX20_03654 0.71 +0.2
3,846,515 + MPMX20_03654 0.71 -0.2
3,846,515 + MPMX20_03654 0.71 +0.6
3,846,515 + MPMX20_03654 0.71 -1.3
3,846,523 - MPMX20_03654 0.72 +1.5
3,846,523 - MPMX20_03654 0.72 -1.9
3,846,523 - MPMX20_03654 0.72 -1.6
3,846,523 - MPMX20_03654 0.72 +0.6
3,846,523 - MPMX20_03654 0.72 +1.2
3,846,523 - MPMX20_03654 0.72 -0.3
3,846,523 - MPMX20_03654 0.72 +0.4
3,846,523 - MPMX20_03654 0.72 +0.0
3,846,523 - MPMX20_03654 0.72 -0.5
3,846,523 - MPMX20_03654 0.72 -0.1
3,846,523 - MPMX20_03654 0.72 +0.1

Or see this region's nucleotide sequence