Experiment: Cytidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03201 and MPMX20_03202 are separated by 95 nucleotides MPMX20_03202 and MPMX20_03203 are separated by 53 nucleotides MPMX20_03203 and MPMX20_03204 are separated by 70 nucleotides
MPMX20_03201: MPMX20_03201 - Isochorismate synthase MenF, at 3,370,721 to 3,372,016
_03201
MPMX20_03202: MPMX20_03202 - Protein ElaB, at 3,372,112 to 3,372,417
_03202
MPMX20_03203: MPMX20_03203 - Protein ElaA, at 3,372,471 to 3,372,932
_03203
MPMX20_03204: MPMX20_03204 - Ribonuclease BN, at 3,373,003 to 3,373,920
_03204
Position (kb)
3372
3373 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3371.116 kb on + strand, within MPMX20_03201 at 3371.118 kb on - strand, within MPMX20_03201 at 3371.124 kb on - strand, within MPMX20_03201 at 3371.156 kb on - strand, within MPMX20_03201 at 3371.365 kb on - strand, within MPMX20_03201 at 3371.398 kb on + strand, within MPMX20_03201 at 3371.398 kb on + strand, within MPMX20_03201 at 3371.404 kb on - strand, within MPMX20_03201 at 3371.406 kb on - strand, within MPMX20_03201 at 3371.422 kb on + strand, within MPMX20_03201 at 3371.443 kb on - strand, within MPMX20_03201 at 3371.471 kb on + strand, within MPMX20_03201 at 3371.471 kb on + strand, within MPMX20_03201 at 3371.471 kb on + strand, within MPMX20_03201 at 3371.472 kb on - strand, within MPMX20_03201 at 3371.838 kb on + strand, within MPMX20_03201 at 3371.875 kb on + strand, within MPMX20_03201 at 3371.891 kb on + strand at 3371.957 kb on + strand at 3372.080 kb on + strand at 3372.088 kb on - strand at 3372.110 kb on + strand at 3372.110 kb on + strand at 3372.122 kb on + strand at 3372.161 kb on + strand, within MPMX20_03202 at 3372.254 kb on - strand, within MPMX20_03202 at 3372.340 kb on + strand, within MPMX20_03202 at 3372.341 kb on + strand, within MPMX20_03202 at 3372.348 kb on - strand, within MPMX20_03202 at 3372.398 kb on + strand at 3372.439 kb on - strand at 3372.440 kb on - strand at 3372.442 kb on + strand at 3372.456 kb on + strand at 3372.531 kb on - strand, within MPMX20_03203 at 3372.538 kb on - strand, within MPMX20_03203 at 3372.601 kb on - strand, within MPMX20_03203 at 3372.713 kb on + strand, within MPMX20_03203 at 3372.774 kb on + strand, within MPMX20_03203 at 3372.829 kb on + strand, within MPMX20_03203 at 3372.842 kb on - strand, within MPMX20_03203 at 3372.865 kb on + strand, within MPMX20_03203 at 3372.909 kb on + strand at 3372.917 kb on - strand at 3372.965 kb on - strand at 3373.143 kb on + strand, within MPMX20_03204 at 3373.148 kb on - strand, within MPMX20_03204 at 3373.151 kb on - strand, within MPMX20_03204 at 3373.163 kb on - strand, within MPMX20_03204 at 3373.242 kb on + strand, within MPMX20_03204 at 3373.275 kb on + strand, within MPMX20_03204 at 3373.339 kb on + strand, within MPMX20_03204 at 3373.354 kb on - strand, within MPMX20_03204 at 3373.354 kb on - strand, within MPMX20_03204 at 3373.354 kb on - strand, within MPMX20_03204 at 3373.370 kb on - strand, within MPMX20_03204 at 3373.414 kb on + strand, within MPMX20_03204 at 3373.414 kb on + strand, within MPMX20_03204 at 3373.416 kb on - strand, within MPMX20_03204
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine (N) remove 3,371,116 + MPMX20_03201 0.30 -0.9 3,371,118 - MPMX20_03201 0.31 +1.0 3,371,124 - MPMX20_03201 0.31 -1.0 3,371,156 - MPMX20_03201 0.34 +0.4 3,371,365 - MPMX20_03201 0.50 +1.5 3,371,398 + MPMX20_03201 0.52 +0.2 3,371,398 + MPMX20_03201 0.52 +0.7 3,371,404 - MPMX20_03201 0.53 -0.3 3,371,406 - MPMX20_03201 0.53 -1.7 3,371,422 + MPMX20_03201 0.54 +0.3 3,371,443 - MPMX20_03201 0.56 -1.0 3,371,471 + MPMX20_03201 0.58 -0.3 3,371,471 + MPMX20_03201 0.58 +0.8 3,371,471 + MPMX20_03201 0.58 +1.6 3,371,472 - MPMX20_03201 0.58 -0.3 3,371,838 + MPMX20_03201 0.86 -0.7 3,371,875 + MPMX20_03201 0.89 -0.5 3,371,891 + +2.5 3,371,957 + -0.3 3,372,080 + +0.7 3,372,088 - +0.7 3,372,110 + -0.1 3,372,110 + -0.1 3,372,122 + -0.4 3,372,161 + MPMX20_03202 0.16 +0.2 3,372,254 - MPMX20_03202 0.46 +0.8 3,372,340 + MPMX20_03202 0.75 -0.8 3,372,341 + MPMX20_03202 0.75 +1.1 3,372,348 - MPMX20_03202 0.77 +0.2 3,372,398 + +0.1 3,372,439 - +0.3 3,372,440 - +0.3 3,372,442 + -0.8 3,372,456 + -1.2 3,372,531 - MPMX20_03203 0.13 +0.4 3,372,538 - MPMX20_03203 0.15 +0.0 3,372,601 - MPMX20_03203 0.28 -0.4 3,372,713 + MPMX20_03203 0.52 -0.3 3,372,774 + MPMX20_03203 0.66 +1.7 3,372,829 + MPMX20_03203 0.77 -1.0 3,372,842 - MPMX20_03203 0.80 -1.7 3,372,865 + MPMX20_03203 0.85 +0.2 3,372,909 + +0.3 3,372,917 - +0.1 3,372,965 - +2.0 3,373,143 + MPMX20_03204 0.15 -1.1 3,373,148 - MPMX20_03204 0.16 -1.9 3,373,151 - MPMX20_03204 0.16 -0.4 3,373,163 - MPMX20_03204 0.17 -1.3 3,373,242 + MPMX20_03204 0.26 -0.9 3,373,275 + MPMX20_03204 0.30 +1.0 3,373,339 + MPMX20_03204 0.37 +1.0 3,373,354 - MPMX20_03204 0.38 -0.2 3,373,354 - MPMX20_03204 0.38 +1.2 3,373,354 - MPMX20_03204 0.38 +1.1 3,373,370 - MPMX20_03204 0.40 +0.9 3,373,414 + MPMX20_03204 0.45 +0.5 3,373,414 + MPMX20_03204 0.45 -0.9 3,373,416 - MPMX20_03204 0.45 +0.3
Or see this region's nucleotide sequence