Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03202

Experiment: Cytidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03201 and MPMX20_03202 are separated by 95 nucleotidesMPMX20_03202 and MPMX20_03203 are separated by 53 nucleotidesMPMX20_03203 and MPMX20_03204 are separated by 70 nucleotides MPMX20_03201: MPMX20_03201 - Isochorismate synthase MenF, at 3,370,721 to 3,372,016 _03201 MPMX20_03202: MPMX20_03202 - Protein ElaB, at 3,372,112 to 3,372,417 _03202 MPMX20_03203: MPMX20_03203 - Protein ElaA, at 3,372,471 to 3,372,932 _03203 MPMX20_03204: MPMX20_03204 - Ribonuclease BN, at 3,373,003 to 3,373,920 _03204 Position (kb) 3372 3373Strain fitness (log2 ratio) -2 -1 0 1 2at 3371.116 kb on + strand, within MPMX20_03201at 3371.118 kb on - strand, within MPMX20_03201at 3371.124 kb on - strand, within MPMX20_03201at 3371.156 kb on - strand, within MPMX20_03201at 3371.365 kb on - strand, within MPMX20_03201at 3371.398 kb on + strand, within MPMX20_03201at 3371.398 kb on + strand, within MPMX20_03201at 3371.404 kb on - strand, within MPMX20_03201at 3371.406 kb on - strand, within MPMX20_03201at 3371.422 kb on + strand, within MPMX20_03201at 3371.443 kb on - strand, within MPMX20_03201at 3371.471 kb on + strand, within MPMX20_03201at 3371.471 kb on + strand, within MPMX20_03201at 3371.471 kb on + strand, within MPMX20_03201at 3371.472 kb on - strand, within MPMX20_03201at 3371.838 kb on + strand, within MPMX20_03201at 3371.875 kb on + strand, within MPMX20_03201at 3371.891 kb on + strandat 3371.957 kb on + strandat 3372.080 kb on + strandat 3372.088 kb on - strandat 3372.110 kb on + strandat 3372.110 kb on + strandat 3372.122 kb on + strandat 3372.161 kb on + strand, within MPMX20_03202at 3372.254 kb on - strand, within MPMX20_03202at 3372.340 kb on + strand, within MPMX20_03202at 3372.341 kb on + strand, within MPMX20_03202at 3372.348 kb on - strand, within MPMX20_03202at 3372.398 kb on + strandat 3372.439 kb on - strandat 3372.440 kb on - strandat 3372.442 kb on + strandat 3372.456 kb on + strandat 3372.531 kb on - strand, within MPMX20_03203at 3372.538 kb on - strand, within MPMX20_03203at 3372.601 kb on - strand, within MPMX20_03203at 3372.713 kb on + strand, within MPMX20_03203at 3372.774 kb on + strand, within MPMX20_03203at 3372.829 kb on + strand, within MPMX20_03203at 3372.842 kb on - strand, within MPMX20_03203at 3372.865 kb on + strand, within MPMX20_03203at 3372.909 kb on + strandat 3372.917 kb on - strandat 3372.965 kb on - strandat 3373.143 kb on + strand, within MPMX20_03204at 3373.148 kb on - strand, within MPMX20_03204at 3373.151 kb on - strand, within MPMX20_03204at 3373.163 kb on - strand, within MPMX20_03204at 3373.242 kb on + strand, within MPMX20_03204at 3373.275 kb on + strand, within MPMX20_03204at 3373.339 kb on + strand, within MPMX20_03204at 3373.354 kb on - strand, within MPMX20_03204at 3373.354 kb on - strand, within MPMX20_03204at 3373.354 kb on - strand, within MPMX20_03204at 3373.370 kb on - strand, within MPMX20_03204at 3373.414 kb on + strand, within MPMX20_03204at 3373.414 kb on + strand, within MPMX20_03204at 3373.416 kb on - strand, within MPMX20_03204

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine (N)
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3,371,116 + MPMX20_03201 0.30 -0.9
3,371,118 - MPMX20_03201 0.31 +1.0
3,371,124 - MPMX20_03201 0.31 -1.0
3,371,156 - MPMX20_03201 0.34 +0.4
3,371,365 - MPMX20_03201 0.50 +1.5
3,371,398 + MPMX20_03201 0.52 +0.2
3,371,398 + MPMX20_03201 0.52 +0.7
3,371,404 - MPMX20_03201 0.53 -0.3
3,371,406 - MPMX20_03201 0.53 -1.7
3,371,422 + MPMX20_03201 0.54 +0.3
3,371,443 - MPMX20_03201 0.56 -1.0
3,371,471 + MPMX20_03201 0.58 -0.3
3,371,471 + MPMX20_03201 0.58 +0.8
3,371,471 + MPMX20_03201 0.58 +1.6
3,371,472 - MPMX20_03201 0.58 -0.3
3,371,838 + MPMX20_03201 0.86 -0.7
3,371,875 + MPMX20_03201 0.89 -0.5
3,371,891 + +2.5
3,371,957 + -0.3
3,372,080 + +0.7
3,372,088 - +0.7
3,372,110 + -0.1
3,372,110 + -0.1
3,372,122 + -0.4
3,372,161 + MPMX20_03202 0.16 +0.2
3,372,254 - MPMX20_03202 0.46 +0.8
3,372,340 + MPMX20_03202 0.75 -0.8
3,372,341 + MPMX20_03202 0.75 +1.1
3,372,348 - MPMX20_03202 0.77 +0.2
3,372,398 + +0.1
3,372,439 - +0.3
3,372,440 - +0.3
3,372,442 + -0.8
3,372,456 + -1.2
3,372,531 - MPMX20_03203 0.13 +0.4
3,372,538 - MPMX20_03203 0.15 +0.0
3,372,601 - MPMX20_03203 0.28 -0.4
3,372,713 + MPMX20_03203 0.52 -0.3
3,372,774 + MPMX20_03203 0.66 +1.7
3,372,829 + MPMX20_03203 0.77 -1.0
3,372,842 - MPMX20_03203 0.80 -1.7
3,372,865 + MPMX20_03203 0.85 +0.2
3,372,909 + +0.3
3,372,917 - +0.1
3,372,965 - +2.0
3,373,143 + MPMX20_03204 0.15 -1.1
3,373,148 - MPMX20_03204 0.16 -1.9
3,373,151 - MPMX20_03204 0.16 -0.4
3,373,163 - MPMX20_03204 0.17 -1.3
3,373,242 + MPMX20_03204 0.26 -0.9
3,373,275 + MPMX20_03204 0.30 +1.0
3,373,339 + MPMX20_03204 0.37 +1.0
3,373,354 - MPMX20_03204 0.38 -0.2
3,373,354 - MPMX20_03204 0.38 +1.2
3,373,354 - MPMX20_03204 0.38 +1.1
3,373,370 - MPMX20_03204 0.40 +0.9
3,373,414 + MPMX20_03204 0.45 +0.5
3,373,414 + MPMX20_03204 0.45 -0.9
3,373,416 - MPMX20_03204 0.45 +0.3

Or see this region's nucleotide sequence