Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02916

Experiment: Cytidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02914 and MPMX20_02915 are separated by 73 nucleotidesMPMX20_02915 and MPMX20_02916 are separated by 41 nucleotides MPMX20_02914: MPMX20_02914 - HTH-type transcriptional regulator PrtR, at 3,052,837 to 3,053,547 _02914 MPMX20_02915: MPMX20_02915 - hypothetical protein, at 3,053,621 to 3,054,001 _02915 MPMX20_02916: MPMX20_02916 - hypothetical protein, at 3,054,043 to 3,054,252 _02916 Position (kb) 3054 3055Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3053.591 kb on - strandat 3053.652 kb on - strandat 3053.652 kb on - strandat 3053.666 kb on - strand, within MPMX20_02915at 3053.668 kb on - strand, within MPMX20_02915at 3053.705 kb on + strand, within MPMX20_02915at 3053.752 kb on + strand, within MPMX20_02915at 3053.788 kb on - strand, within MPMX20_02915at 3053.791 kb on + strand, within MPMX20_02915at 3053.791 kb on + strand, within MPMX20_02915at 3053.791 kb on + strand, within MPMX20_02915at 3053.791 kb on + strand, within MPMX20_02915at 3053.791 kb on + strand, within MPMX20_02915at 3053.791 kb on + strand, within MPMX20_02915at 3053.791 kb on + strand, within MPMX20_02915at 3053.791 kb on + strand, within MPMX20_02915at 3053.791 kb on + strand, within MPMX20_02915at 3053.791 kb on + strand, within MPMX20_02915at 3053.799 kb on - strand, within MPMX20_02915at 3053.799 kb on - strand, within MPMX20_02915at 3053.799 kb on - strand, within MPMX20_02915at 3053.838 kb on + strand, within MPMX20_02915at 3053.853 kb on + strand, within MPMX20_02915at 3053.853 kb on + strand, within MPMX20_02915at 3053.858 kb on + strand, within MPMX20_02915at 3053.861 kb on - strand, within MPMX20_02915at 3053.861 kb on - strand, within MPMX20_02915at 3053.866 kb on - strand, within MPMX20_02915at 3053.907 kb on + strand, within MPMX20_02915at 3053.908 kb on + strand, within MPMX20_02915at 3053.912 kb on + strand, within MPMX20_02915at 3053.916 kb on + strand, within MPMX20_02915at 3053.920 kb on - strand, within MPMX20_02915at 3053.923 kb on + strand, within MPMX20_02915at 3053.947 kb on + strand, within MPMX20_02915at 3053.955 kb on - strand, within MPMX20_02915at 3053.955 kb on - strand, within MPMX20_02915at 3053.955 kb on - strand, within MPMX20_02915at 3053.959 kb on + strand, within MPMX20_02915at 3053.996 kb on + strandat 3053.996 kb on + strandat 3054.008 kb on + strandat 3054.016 kb on - strandat 3054.044 kb on - strandat 3054.044 kb on - strandat 3054.046 kb on + strandat 3054.047 kb on - strandat 3054.054 kb on - strandat 3054.130 kb on + strand, within MPMX20_02916at 3054.143 kb on - strand, within MPMX20_02916at 3054.143 kb on - strand, within MPMX20_02916at 3054.143 kb on - strand, within MPMX20_02916at 3054.149 kb on + strand, within MPMX20_02916at 3054.156 kb on + strand, within MPMX20_02916at 3054.220 kb on - strand, within MPMX20_02916at 3054.220 kb on - strand, within MPMX20_02916at 3054.249 kb on - strandat 3054.281 kb on + strandat 3054.289 kb on - strandat 3054.428 kb on + strandat 3054.477 kb on + strandat 3054.498 kb on + strandat 3054.506 kb on - strandat 3054.537 kb on - strandat 3054.592 kb on + strandat 3054.600 kb on - strandat 3054.625 kb on + strandat 3054.625 kb on + strandat 3054.633 kb on - strandat 3054.649 kb on + strandat 3054.671 kb on + strandat 3054.692 kb on - strandat 3054.692 kb on - strandat 3054.749 kb on + strandat 3054.762 kb on - strandat 3054.779 kb on - strandat 3054.796 kb on + strandat 3054.796 kb on + strandat 3054.796 kb on + strandat 3054.844 kb on - strandat 3054.861 kb on + strandat 3054.881 kb on + strandat 3054.907 kb on - strandat 3054.918 kb on + strandat 3054.918 kb on + strandat 3054.926 kb on - strandat 3054.953 kb on + strandat 3055.005 kb on + strandat 3055.008 kb on - strandat 3055.012 kb on + strandat 3055.012 kb on + strandat 3055.012 kb on + strandat 3055.012 kb on + strandat 3055.012 kb on + strandat 3055.012 kb on + strandat 3055.020 kb on - strandat 3055.020 kb on - strandat 3055.020 kb on - strandat 3055.039 kb on + strandat 3055.054 kb on + strandat 3055.095 kb on + strandat 3055.095 kb on + strandat 3055.102 kb on + strandat 3055.103 kb on - strandat 3055.127 kb on + strandat 3055.161 kb on + strandat 3055.169 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine (N)
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3,053,591 - -0.9
3,053,652 - +0.5
3,053,652 - +0.9
3,053,666 - MPMX20_02915 0.12 +2.0
3,053,668 - MPMX20_02915 0.12 +3.6
3,053,705 + MPMX20_02915 0.22 +0.4
3,053,752 + MPMX20_02915 0.34 +1.2
3,053,788 - MPMX20_02915 0.44 -2.7
3,053,791 + MPMX20_02915 0.45 +0.8
3,053,791 + MPMX20_02915 0.45 +1.2
3,053,791 + MPMX20_02915 0.45 -1.4
3,053,791 + MPMX20_02915 0.45 +1.7
3,053,791 + MPMX20_02915 0.45 -0.1
3,053,791 + MPMX20_02915 0.45 +3.6
3,053,791 + MPMX20_02915 0.45 +1.1
3,053,791 + MPMX20_02915 0.45 +2.1
3,053,791 + MPMX20_02915 0.45 +1.6
3,053,791 + MPMX20_02915 0.45 +0.1
3,053,799 - MPMX20_02915 0.47 -0.3
3,053,799 - MPMX20_02915 0.47 +1.7
3,053,799 - MPMX20_02915 0.47 +0.4
3,053,838 + MPMX20_02915 0.57 +0.8
3,053,853 + MPMX20_02915 0.61 -2.6
3,053,853 + MPMX20_02915 0.61 +0.5
3,053,858 + MPMX20_02915 0.62 +0.2
3,053,861 - MPMX20_02915 0.63 +0.8
3,053,861 - MPMX20_02915 0.63 +1.4
3,053,866 - MPMX20_02915 0.64 +0.8
3,053,907 + MPMX20_02915 0.75 +2.0
3,053,908 + MPMX20_02915 0.75 +0.9
3,053,912 + MPMX20_02915 0.76 +1.7
3,053,916 + MPMX20_02915 0.77 +1.9
3,053,920 - MPMX20_02915 0.78 -0.2
3,053,923 + MPMX20_02915 0.79 -1.2
3,053,947 + MPMX20_02915 0.86 +1.5
3,053,955 - MPMX20_02915 0.88 +2.7
3,053,955 - MPMX20_02915 0.88 +0.7
3,053,955 - MPMX20_02915 0.88 +0.4
3,053,959 + MPMX20_02915 0.89 +1.6
3,053,996 + +0.4
3,053,996 + +0.4
3,054,008 + +1.7
3,054,016 - +0.5
3,054,044 - +1.4
3,054,044 - +0.8
3,054,046 + +0.6
3,054,047 - +2.5
3,054,054 - +1.9
3,054,130 + MPMX20_02916 0.41 -0.7
3,054,143 - MPMX20_02916 0.48 +2.8
3,054,143 - MPMX20_02916 0.48 +0.8
3,054,143 - MPMX20_02916 0.48 +1.4
3,054,149 + MPMX20_02916 0.50 -0.5
3,054,156 + MPMX20_02916 0.54 +1.8
3,054,220 - MPMX20_02916 0.84 +0.6
3,054,220 - MPMX20_02916 0.84 +1.7
3,054,249 - +1.2
3,054,281 + +0.9
3,054,289 - +0.5
3,054,428 + -0.0
3,054,477 + +0.7
3,054,498 + +0.7
3,054,506 - -1.0
3,054,537 - -0.2
3,054,592 + -0.1
3,054,600 - +2.4
3,054,625 + +2.1
3,054,625 + +0.9
3,054,633 - +0.6
3,054,649 + +1.4
3,054,671 + +1.3
3,054,692 - +0.6
3,054,692 - -0.2
3,054,749 + +1.1
3,054,762 - +0.7
3,054,779 - -0.4
3,054,796 + +0.1
3,054,796 + +3.8
3,054,796 + +1.8
3,054,844 - -1.9
3,054,861 + +1.6
3,054,881 + +0.9
3,054,907 - +2.6
3,054,918 + -2.6
3,054,918 + +1.4
3,054,926 - +1.8
3,054,953 + -2.6
3,055,005 + +0.9
3,055,008 - +0.5
3,055,012 + +2.1
3,055,012 + +1.9
3,055,012 + -0.4
3,055,012 + +2.3
3,055,012 + +1.2
3,055,012 + +2.2
3,055,020 - +1.0
3,055,020 - +1.0
3,055,020 - +1.1
3,055,039 + +1.6
3,055,054 + +2.0
3,055,095 + +1.0
3,055,095 + +1.3
3,055,102 + +1.4
3,055,103 - +1.2
3,055,127 + -0.2
3,055,161 + +1.7
3,055,169 - +1.1

Or see this region's nucleotide sequence