Experiment: Cytidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02880 and MPMX20_02881 are separated by 104 nucleotides MPMX20_02881 and MPMX20_02882 overlap by 1 nucleotides MPMX20_02882 and MPMX20_02883 are separated by 2 nucleotides MPMX20_02883 and MPMX20_02884 are separated by 11 nucleotides
MPMX20_02880: MPMX20_02880 - hypothetical protein, at 3,033,310 to 3,033,978
_02880
MPMX20_02881: MPMX20_02881 - hypothetical protein, at 3,034,083 to 3,034,253
_02881
MPMX20_02882: MPMX20_02882 - hypothetical protein, at 3,034,253 to 3,034,633
_02882
MPMX20_02883: MPMX20_02883 - hypothetical protein, at 3,034,636 to 3,035,001
_02883
MPMX20_02884: MPMX20_02884 - hypothetical protein, at 3,035,013 to 3,036,098
_02884
Position (kb)
3034
3035
3036 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 3033.636 kb on + strand, within MPMX20_02880 at 3033.636 kb on + strand, within MPMX20_02880 at 3033.638 kb on - strand, within MPMX20_02880 at 3033.644 kb on - strand, within MPMX20_02880 at 3033.646 kb on + strand, within MPMX20_02880 at 3033.686 kb on - strand, within MPMX20_02880 at 3033.725 kb on - strand, within MPMX20_02880 at 3033.738 kb on - strand, within MPMX20_02880 at 3033.795 kb on - strand, within MPMX20_02880 at 3033.795 kb on - strand, within MPMX20_02880 at 3033.802 kb on + strand, within MPMX20_02880 at 3033.815 kb on - strand, within MPMX20_02880 at 3033.825 kb on + strand, within MPMX20_02880 at 3033.825 kb on + strand, within MPMX20_02880 at 3033.825 kb on + strand, within MPMX20_02880 at 3033.825 kb on + strand, within MPMX20_02880 at 3033.826 kb on - strand, within MPMX20_02880 at 3033.833 kb on - strand, within MPMX20_02880 at 3033.839 kb on + strand, within MPMX20_02880 at 3033.859 kb on - strand, within MPMX20_02880 at 3033.875 kb on + strand, within MPMX20_02880 at 3033.875 kb on + strand, within MPMX20_02880 at 3033.875 kb on + strand, within MPMX20_02880 at 3033.898 kb on - strand, within MPMX20_02880 at 3033.917 kb on - strand at 3033.952 kb on - strand at 3033.952 kb on - strand at 3033.972 kb on - strand at 3033.974 kb on + strand at 3033.981 kb on - strand at 3033.982 kb on - strand at 3034.003 kb on - strand at 3034.005 kb on + strand at 3034.111 kb on - strand, within MPMX20_02881 at 3034.111 kb on - strand, within MPMX20_02881 at 3034.171 kb on + strand, within MPMX20_02881 at 3034.206 kb on - strand, within MPMX20_02881 at 3034.240 kb on + strand at 3034.267 kb on - strand at 3034.268 kb on - strand at 3034.287 kb on + strand at 3034.287 kb on - strand at 3034.295 kb on - strand, within MPMX20_02882 at 3034.350 kb on - strand, within MPMX20_02882 at 3034.367 kb on + strand, within MPMX20_02882 at 3034.378 kb on - strand, within MPMX20_02882 at 3034.452 kb on - strand, within MPMX20_02882 at 3034.488 kb on - strand, within MPMX20_02882 at 3034.496 kb on - strand, within MPMX20_02882 at 3034.503 kb on - strand, within MPMX20_02882 at 3034.503 kb on - strand, within MPMX20_02882 at 3034.504 kb on - strand, within MPMX20_02882 at 3034.570 kb on + strand, within MPMX20_02882 at 3034.570 kb on + strand, within MPMX20_02882 at 3034.580 kb on + strand, within MPMX20_02882 at 3034.588 kb on - strand, within MPMX20_02882 at 3034.678 kb on - strand, within MPMX20_02883 at 3034.678 kb on - strand, within MPMX20_02883 at 3034.678 kb on - strand, within MPMX20_02883 at 3034.683 kb on - strand, within MPMX20_02883 at 3034.721 kb on + strand, within MPMX20_02883 at 3034.723 kb on - strand, within MPMX20_02883 at 3034.728 kb on - strand, within MPMX20_02883 at 3034.760 kb on - strand, within MPMX20_02883 at 3034.764 kb on + strand, within MPMX20_02883 at 3034.803 kb on + strand, within MPMX20_02883 at 3034.823 kb on + strand, within MPMX20_02883 at 3034.823 kb on + strand, within MPMX20_02883 at 3034.880 kb on - strand, within MPMX20_02883 at 3034.899 kb on + strand, within MPMX20_02883 at 3034.961 kb on - strand, within MPMX20_02883 at 3034.963 kb on + strand, within MPMX20_02883 at 3034.972 kb on - strand at 3034.977 kb on - strand at 3035.009 kb on + strand at 3035.036 kb on - strand at 3035.036 kb on - strand at 3035.047 kb on - strand at 3035.078 kb on + strand at 3035.086 kb on - strand at 3035.120 kb on - strand at 3035.203 kb on + strand, within MPMX20_02884 at 3035.236 kb on + strand, within MPMX20_02884 at 3035.264 kb on + strand, within MPMX20_02884 at 3035.277 kb on - strand, within MPMX20_02884 at 3035.279 kb on + strand, within MPMX20_02884 at 3035.335 kb on - strand, within MPMX20_02884 at 3035.337 kb on + strand, within MPMX20_02884 at 3035.337 kb on + strand, within MPMX20_02884 at 3035.337 kb on + strand, within MPMX20_02884 at 3035.340 kb on - strand, within MPMX20_02884 at 3035.345 kb on - strand, within MPMX20_02884 at 3035.366 kb on + strand, within MPMX20_02884 at 3035.374 kb on + strand, within MPMX20_02884 at 3035.374 kb on + strand, within MPMX20_02884 at 3035.382 kb on - strand, within MPMX20_02884 at 3035.416 kb on + strand, within MPMX20_02884 at 3035.424 kb on - strand, within MPMX20_02884 at 3035.447 kb on + strand, within MPMX20_02884 at 3035.447 kb on + strand, within MPMX20_02884 at 3035.490 kb on + strand, within MPMX20_02884 at 3035.493 kb on - strand, within MPMX20_02884 at 3035.535 kb on - strand, within MPMX20_02884 at 3035.551 kb on + strand, within MPMX20_02884 at 3035.585 kb on + strand, within MPMX20_02884 at 3035.599 kb on - strand, within MPMX20_02884 at 3035.630 kb on - strand, within MPMX20_02884 at 3035.635 kb on - strand, within MPMX20_02884 at 3035.687 kb on - strand, within MPMX20_02884 at 3035.702 kb on + strand, within MPMX20_02884 at 3035.734 kb on + strand, within MPMX20_02884 at 3035.793 kb on + strand, within MPMX20_02884 at 3035.852 kb on + strand, within MPMX20_02884 at 3035.879 kb on + strand, within MPMX20_02884 at 3035.989 kb on + strand, within MPMX20_02884 at 3035.989 kb on + strand, within MPMX20_02884 at 3035.997 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine (N) remove 3,033,636 + MPMX20_02880 0.49 +0.4 3,033,636 + MPMX20_02880 0.49 +3.6 3,033,638 - MPMX20_02880 0.49 +1.5 3,033,644 - MPMX20_02880 0.50 +1.3 3,033,646 + MPMX20_02880 0.50 +1.0 3,033,686 - MPMX20_02880 0.56 -1.1 3,033,725 - MPMX20_02880 0.62 +1.0 3,033,738 - MPMX20_02880 0.64 +1.0 3,033,795 - MPMX20_02880 0.72 +0.7 3,033,795 - MPMX20_02880 0.72 +1.6 3,033,802 + MPMX20_02880 0.74 +1.2 3,033,815 - MPMX20_02880 0.75 +1.1 3,033,825 + MPMX20_02880 0.77 +0.3 3,033,825 + MPMX20_02880 0.77 +0.7 3,033,825 + MPMX20_02880 0.77 +2.3 3,033,825 + MPMX20_02880 0.77 -0.4 3,033,826 - MPMX20_02880 0.77 +1.6 3,033,833 - MPMX20_02880 0.78 +0.8 3,033,839 + MPMX20_02880 0.79 +1.1 3,033,859 - MPMX20_02880 0.82 +0.4 3,033,875 + MPMX20_02880 0.84 +0.6 3,033,875 + MPMX20_02880 0.84 +1.6 3,033,875 + MPMX20_02880 0.84 +0.8 3,033,898 - MPMX20_02880 0.88 +2.6 3,033,917 - -0.3 3,033,952 - +3.1 3,033,952 - -1.3 3,033,972 - +1.4 3,033,974 + +1.7 3,033,981 - +0.8 3,033,982 - +0.3 3,034,003 - +1.5 3,034,005 + +0.5 3,034,111 - MPMX20_02881 0.16 +1.3 3,034,111 - MPMX20_02881 0.16 +0.2 3,034,171 + MPMX20_02881 0.51 -1.0 3,034,206 - MPMX20_02881 0.72 +4.1 3,034,240 + +2.0 3,034,267 - +0.7 3,034,268 - +1.8 3,034,287 + -0.2 3,034,287 - -0.0 3,034,295 - MPMX20_02882 0.11 +0.9 3,034,350 - MPMX20_02882 0.25 -0.0 3,034,367 + MPMX20_02882 0.30 +1.6 3,034,378 - MPMX20_02882 0.33 -0.3 3,034,452 - MPMX20_02882 0.52 +4.9 3,034,488 - MPMX20_02882 0.62 -0.7 3,034,496 - MPMX20_02882 0.64 -0.2 3,034,503 - MPMX20_02882 0.66 +0.1 3,034,503 - MPMX20_02882 0.66 +0.3 3,034,504 - MPMX20_02882 0.66 -0.3 3,034,570 + MPMX20_02882 0.83 -1.9 3,034,570 + MPMX20_02882 0.83 -0.5 3,034,580 + MPMX20_02882 0.86 +0.1 3,034,588 - MPMX20_02882 0.88 +0.4 3,034,678 - MPMX20_02883 0.11 -0.1 3,034,678 - MPMX20_02883 0.11 -1.5 3,034,678 - MPMX20_02883 0.11 -2.5 3,034,683 - MPMX20_02883 0.13 -0.2 3,034,721 + MPMX20_02883 0.23 +1.2 3,034,723 - MPMX20_02883 0.24 +1.1 3,034,728 - MPMX20_02883 0.25 -0.0 3,034,760 - MPMX20_02883 0.34 +0.9 3,034,764 + MPMX20_02883 0.35 +1.8 3,034,803 + MPMX20_02883 0.46 -0.0 3,034,823 + MPMX20_02883 0.51 +2.2 3,034,823 + MPMX20_02883 0.51 +2.3 3,034,880 - MPMX20_02883 0.67 +1.3 3,034,899 + MPMX20_02883 0.72 +1.2 3,034,961 - MPMX20_02883 0.89 +1.9 3,034,963 + MPMX20_02883 0.89 +1.0 3,034,972 - +1.2 3,034,977 - +1.1 3,035,009 + -1.5 3,035,036 - +0.9 3,035,036 - +0.8 3,035,047 - +0.1 3,035,078 + -0.6 3,035,086 - -0.1 3,035,120 - -0.7 3,035,203 + MPMX20_02884 0.17 -1.1 3,035,236 + MPMX20_02884 0.21 -0.2 3,035,264 + MPMX20_02884 0.23 -0.5 3,035,277 - MPMX20_02884 0.24 +0.3 3,035,279 + MPMX20_02884 0.24 -0.4 3,035,335 - MPMX20_02884 0.30 -0.8 3,035,337 + MPMX20_02884 0.30 -0.6 3,035,337 + MPMX20_02884 0.30 +0.6 3,035,337 + MPMX20_02884 0.30 +0.0 3,035,340 - MPMX20_02884 0.30 +0.3 3,035,345 - MPMX20_02884 0.31 -1.9 3,035,366 + MPMX20_02884 0.33 +0.5 3,035,374 + MPMX20_02884 0.33 +0.1 3,035,374 + MPMX20_02884 0.33 +0.3 3,035,382 - MPMX20_02884 0.34 -0.0 3,035,416 + MPMX20_02884 0.37 -0.9 3,035,424 - MPMX20_02884 0.38 -0.3 3,035,447 + MPMX20_02884 0.40 +0.7 3,035,447 + MPMX20_02884 0.40 -0.5 3,035,490 + MPMX20_02884 0.44 +0.7 3,035,493 - MPMX20_02884 0.44 +0.0 3,035,535 - MPMX20_02884 0.48 +0.4 3,035,551 + MPMX20_02884 0.50 -0.6 3,035,585 + MPMX20_02884 0.53 -1.3 3,035,599 - MPMX20_02884 0.54 +0.4 3,035,630 - MPMX20_02884 0.57 -0.7 3,035,635 - MPMX20_02884 0.57 +0.8 3,035,687 - MPMX20_02884 0.62 -1.6 3,035,702 + MPMX20_02884 0.63 +0.3 3,035,734 + MPMX20_02884 0.66 +0.3 3,035,793 + MPMX20_02884 0.72 -0.3 3,035,852 + MPMX20_02884 0.77 -1.7 3,035,879 + MPMX20_02884 0.80 -0.3 3,035,989 + MPMX20_02884 0.90 -0.0 3,035,989 + MPMX20_02884 0.90 +1.3 3,035,997 - -0.7
Or see this region's nucleotide sequence