Experiment: Cytidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02596 and MPMX20_02597 are separated by 157 nucleotides MPMX20_02597 and MPMX20_02598 are separated by 35 nucleotides MPMX20_02598 and MPMX20_02599 are separated by 61 nucleotides MPMX20_02599 and MPMX20_02600 are separated by 107 nucleotides
MPMX20_02596: MPMX20_02596 - Formyltetrahydrofolate deformylase, at 2,733,911 to 2,734,753
_02596
MPMX20_02597: MPMX20_02597 - tRNA-Tyr, at 2,734,911 to 2,734,995
_02597
MPMX20_02598: MPMX20_02598 - tRNA-Tyr, at 2,735,031 to 2,735,115
_02598
MPMX20_02599: MPMX20_02599 - HTH-type transcriptional regulator LrpC, at 2,735,177 to 2,735,620
_02599
MPMX20_02600: MPMX20_02600 - hypothetical protein, at 2,735,728 to 2,736,624
_02600
Position (kb)
2734
2735 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2733.927 kb on + strand at 2733.927 kb on + strand at 2733.933 kb on - strand at 2733.943 kb on + strand at 2733.951 kb on - strand at 2733.951 kb on - strand at 2733.996 kb on + strand, within MPMX20_02596 at 2734.004 kb on + strand, within MPMX20_02596 at 2734.036 kb on + strand, within MPMX20_02596 at 2734.039 kb on - strand, within MPMX20_02596 at 2734.061 kb on - strand, within MPMX20_02596 at 2734.070 kb on + strand, within MPMX20_02596 at 2734.089 kb on + strand, within MPMX20_02596 at 2734.123 kb on + strand, within MPMX20_02596 at 2734.123 kb on + strand, within MPMX20_02596 at 2734.131 kb on - strand, within MPMX20_02596 at 2734.131 kb on - strand, within MPMX20_02596 at 2734.132 kb on - strand, within MPMX20_02596 at 2734.157 kb on + strand, within MPMX20_02596 at 2734.200 kb on + strand, within MPMX20_02596 at 2734.200 kb on + strand, within MPMX20_02596 at 2734.219 kb on - strand, within MPMX20_02596 at 2734.244 kb on + strand, within MPMX20_02596 at 2734.299 kb on - strand, within MPMX20_02596 at 2734.299 kb on - strand, within MPMX20_02596 at 2734.329 kb on - strand, within MPMX20_02596 at 2734.334 kb on + strand, within MPMX20_02596 at 2734.334 kb on + strand, within MPMX20_02596 at 2734.334 kb on + strand, within MPMX20_02596 at 2734.334 kb on + strand, within MPMX20_02596 at 2734.334 kb on + strand, within MPMX20_02596 at 2734.342 kb on - strand, within MPMX20_02596 at 2734.342 kb on - strand, within MPMX20_02596 at 2734.342 kb on - strand, within MPMX20_02596 at 2734.342 kb on - strand, within MPMX20_02596 at 2734.342 kb on - strand, within MPMX20_02596 at 2734.342 kb on - strand, within MPMX20_02596 at 2734.342 kb on - strand, within MPMX20_02596 at 2734.342 kb on - strand, within MPMX20_02596 at 2734.342 kb on - strand, within MPMX20_02596 at 2734.342 kb on - strand, within MPMX20_02596 at 2734.366 kb on + strand, within MPMX20_02596 at 2734.432 kb on - strand, within MPMX20_02596 at 2734.432 kb on - strand, within MPMX20_02596 at 2734.493 kb on + strand, within MPMX20_02596 at 2734.511 kb on - strand, within MPMX20_02596 at 2734.525 kb on - strand, within MPMX20_02596 at 2734.622 kb on + strand, within MPMX20_02596 at 2734.630 kb on - strand, within MPMX20_02596 at 2734.630 kb on - strand, within MPMX20_02596 at 2734.635 kb on - strand, within MPMX20_02596 at 2734.684 kb on - strand at 2734.686 kb on + strand at 2734.686 kb on + strand at 2734.686 kb on + strand at 2734.698 kb on + strand at 2734.778 kb on + strand at 2734.785 kb on + strand at 2734.870 kb on + strand at 2734.899 kb on + strand at 2734.907 kb on - strand at 2734.928 kb on + strand, within MPMX20_02597 at 2734.928 kb on + strand, within MPMX20_02597 at 2734.928 kb on + strand, within MPMX20_02597 at 2734.928 kb on + strand, within MPMX20_02597 at 2734.936 kb on - strand, within MPMX20_02597 at 2735.056 kb on - strand, within MPMX20_02598 at 2735.056 kb on - strand, within MPMX20_02598 at 2735.056 kb on - strand, within MPMX20_02598 at 2735.056 kb on - strand, within MPMX20_02598 at 2735.188 kb on - strand at 2735.192 kb on - strand at 2735.239 kb on - strand, within MPMX20_02599 at 2735.270 kb on + strand, within MPMX20_02599 at 2735.298 kb on - strand, within MPMX20_02599 at 2735.320 kb on - strand, within MPMX20_02599 at 2735.389 kb on - strand, within MPMX20_02599 at 2735.430 kb on - strand, within MPMX20_02599 at 2735.432 kb on - strand, within MPMX20_02599 at 2735.437 kb on - strand, within MPMX20_02599 at 2735.452 kb on - strand, within MPMX20_02599 at 2735.463 kb on - strand, within MPMX20_02599 at 2735.463 kb on - strand, within MPMX20_02599 at 2735.473 kb on + strand, within MPMX20_02599 at 2735.490 kb on + strand, within MPMX20_02599 at 2735.508 kb on + strand, within MPMX20_02599 at 2735.510 kb on + strand, within MPMX20_02599 at 2735.511 kb on - strand, within MPMX20_02599 at 2735.511 kb on - strand, within MPMX20_02599 at 2735.511 kb on - strand, within MPMX20_02599 at 2735.519 kb on + strand, within MPMX20_02599 at 2735.553 kb on - strand, within MPMX20_02599 at 2735.565 kb on + strand, within MPMX20_02599 at 2735.573 kb on - strand, within MPMX20_02599 at 2735.579 kb on + strand at 2735.660 kb on - strand at 2735.661 kb on - strand at 2735.813 kb on - strand at 2735.850 kb on + strand, within MPMX20_02600 at 2735.853 kb on - strand, within MPMX20_02600 at 2735.953 kb on - strand, within MPMX20_02600 at 2735.956 kb on + strand, within MPMX20_02600 at 2735.958 kb on + strand, within MPMX20_02600 at 2735.959 kb on - strand, within MPMX20_02600 at 2735.966 kb on + strand, within MPMX20_02600 at 2735.967 kb on - strand, within MPMX20_02600 at 2735.974 kb on - strand, within MPMX20_02600 at 2735.976 kb on + strand, within MPMX20_02600 at 2735.984 kb on - strand, within MPMX20_02600 at 2735.991 kb on - strand, within MPMX20_02600
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine (N) remove 2,733,927 + -1.8 2,733,927 + -1.9 2,733,933 - -1.7 2,733,943 + -2.1 2,733,951 - -2.7 2,733,951 - -0.1 2,733,996 + MPMX20_02596 0.10 +0.7 2,734,004 + MPMX20_02596 0.11 -1.2 2,734,036 + MPMX20_02596 0.15 -3.9 2,734,039 - MPMX20_02596 0.15 -1.7 2,734,061 - MPMX20_02596 0.18 +0.4 2,734,070 + MPMX20_02596 0.19 -1.4 2,734,089 + MPMX20_02596 0.21 -1.8 2,734,123 + MPMX20_02596 0.25 -1.7 2,734,123 + MPMX20_02596 0.25 -1.9 2,734,131 - MPMX20_02596 0.26 -0.8 2,734,131 - MPMX20_02596 0.26 -2.6 2,734,132 - MPMX20_02596 0.26 -1.9 2,734,157 + MPMX20_02596 0.29 -1.1 2,734,200 + MPMX20_02596 0.34 -1.1 2,734,200 + MPMX20_02596 0.34 -1.4 2,734,219 - MPMX20_02596 0.37 -1.0 2,734,244 + MPMX20_02596 0.40 -1.5 2,734,299 - MPMX20_02596 0.46 -1.6 2,734,299 - MPMX20_02596 0.46 -1.4 2,734,329 - MPMX20_02596 0.50 -0.6 2,734,334 + MPMX20_02596 0.50 -2.3 2,734,334 + MPMX20_02596 0.50 -1.6 2,734,334 + MPMX20_02596 0.50 -0.6 2,734,334 + MPMX20_02596 0.50 +0.2 2,734,334 + MPMX20_02596 0.50 -2.2 2,734,342 - MPMX20_02596 0.51 -1.1 2,734,342 - MPMX20_02596 0.51 -3.0 2,734,342 - MPMX20_02596 0.51 -2.7 2,734,342 - MPMX20_02596 0.51 -1.4 2,734,342 - MPMX20_02596 0.51 +0.2 2,734,342 - MPMX20_02596 0.51 -0.3 2,734,342 - MPMX20_02596 0.51 -1.0 2,734,342 - MPMX20_02596 0.51 -1.6 2,734,342 - MPMX20_02596 0.51 -0.6 2,734,342 - MPMX20_02596 0.51 -2.9 2,734,366 + MPMX20_02596 0.54 -2.4 2,734,432 - MPMX20_02596 0.62 -1.1 2,734,432 - MPMX20_02596 0.62 -0.4 2,734,493 + MPMX20_02596 0.69 -1.8 2,734,511 - MPMX20_02596 0.71 -0.8 2,734,525 - MPMX20_02596 0.73 -2.1 2,734,622 + MPMX20_02596 0.84 -2.7 2,734,630 - MPMX20_02596 0.85 -1.1 2,734,630 - MPMX20_02596 0.85 -4.0 2,734,635 - MPMX20_02596 0.86 -1.6 2,734,684 - -1.8 2,734,686 + -2.2 2,734,686 + -3.8 2,734,686 + -1.2 2,734,698 + -1.7 2,734,778 + +0.4 2,734,785 + +1.8 2,734,870 + -0.5 2,734,899 + -0.2 2,734,907 - -1.0 2,734,928 + MPMX20_02597 0.20 +0.8 2,734,928 + MPMX20_02597 0.20 +3.0 2,734,928 + MPMX20_02597 0.20 +0.3 2,734,928 + MPMX20_02597 0.20 +0.2 2,734,936 - MPMX20_02597 0.29 -0.8 2,735,056 - MPMX20_02598 0.29 +1.2 2,735,056 - MPMX20_02598 0.29 +0.2 2,735,056 - MPMX20_02598 0.29 +2.1 2,735,056 - MPMX20_02598 0.29 -1.8 2,735,188 - -1.5 2,735,192 - +1.2 2,735,239 - MPMX20_02599 0.14 +3.1 2,735,270 + MPMX20_02599 0.21 -0.1 2,735,298 - MPMX20_02599 0.27 -0.5 2,735,320 - MPMX20_02599 0.32 +0.7 2,735,389 - MPMX20_02599 0.48 -0.7 2,735,430 - MPMX20_02599 0.57 -0.2 2,735,432 - MPMX20_02599 0.57 +1.5 2,735,437 - MPMX20_02599 0.59 +1.2 2,735,452 - MPMX20_02599 0.62 +0.4 2,735,463 - MPMX20_02599 0.64 -0.6 2,735,463 - MPMX20_02599 0.64 +0.8 2,735,473 + MPMX20_02599 0.67 +0.1 2,735,490 + MPMX20_02599 0.70 +0.2 2,735,508 + MPMX20_02599 0.75 +0.4 2,735,510 + MPMX20_02599 0.75 -0.7 2,735,511 - MPMX20_02599 0.75 -2.3 2,735,511 - MPMX20_02599 0.75 +0.4 2,735,511 - MPMX20_02599 0.75 -0.0 2,735,519 + MPMX20_02599 0.77 -1.5 2,735,553 - MPMX20_02599 0.85 -1.1 2,735,565 + MPMX20_02599 0.87 +0.2 2,735,573 - MPMX20_02599 0.89 -1.8 2,735,579 + +0.1 2,735,660 - +0.5 2,735,661 - -0.2 2,735,813 - -1.8 2,735,850 + MPMX20_02600 0.14 +2.1 2,735,853 - MPMX20_02600 0.14 +0.1 2,735,953 - MPMX20_02600 0.25 +0.4 2,735,956 + MPMX20_02600 0.25 +0.9 2,735,958 + MPMX20_02600 0.26 +0.1 2,735,959 - MPMX20_02600 0.26 +1.2 2,735,966 + MPMX20_02600 0.27 +1.0 2,735,967 - MPMX20_02600 0.27 +1.2 2,735,974 - MPMX20_02600 0.27 -0.7 2,735,976 + MPMX20_02600 0.28 +0.6 2,735,984 - MPMX20_02600 0.29 +0.5 2,735,991 - MPMX20_02600 0.29 -2.8
Or see this region's nucleotide sequence