Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01153

Experiment: Cytidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01152 and MPMX20_01153 are separated by 73 nucleotidesMPMX20_01153 and MPMX20_01154 are separated by 263 nucleotides MPMX20_01152: MPMX20_01152 - 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase, at 1,213,646 to 1,214,479 _01152 MPMX20_01153: MPMX20_01153 - HTH-type transcriptional activator RhaS, at 1,214,553 to 1,214,972 _01153 MPMX20_01154: MPMX20_01154 - Multidrug resistance protein MdtE, at 1,215,236 to 1,216,411 _01154 Position (kb) 1214 1215Strain fitness (log2 ratio) -2 -1 0 1at 1213.601 kb on + strandat 1213.614 kb on - strandat 1213.637 kb on - strandat 1213.713 kb on - strandat 1213.828 kb on - strand, within MPMX20_01152at 1213.854 kb on + strand, within MPMX20_01152at 1213.862 kb on - strand, within MPMX20_01152at 1213.889 kb on + strand, within MPMX20_01152at 1213.899 kb on + strand, within MPMX20_01152at 1213.923 kb on + strand, within MPMX20_01152at 1213.946 kb on + strand, within MPMX20_01152at 1213.946 kb on + strand, within MPMX20_01152at 1213.993 kb on + strand, within MPMX20_01152at 1213.995 kb on - strand, within MPMX20_01152at 1214.001 kb on - strand, within MPMX20_01152at 1214.001 kb on - strand, within MPMX20_01152at 1214.001 kb on - strand, within MPMX20_01152at 1214.013 kb on - strand, within MPMX20_01152at 1214.063 kb on - strand, within MPMX20_01152at 1214.135 kb on - strand, within MPMX20_01152at 1214.168 kb on - strand, within MPMX20_01152at 1214.416 kb on - strandat 1214.461 kb on - strandat 1214.468 kb on + strandat 1214.521 kb on + strandat 1214.575 kb on + strandat 1214.584 kb on + strandat 1214.592 kb on - strandat 1214.697 kb on + strand, within MPMX20_01153at 1214.702 kb on + strand, within MPMX20_01153at 1214.712 kb on - strand, within MPMX20_01153at 1214.827 kb on + strand, within MPMX20_01153at 1214.835 kb on - strand, within MPMX20_01153at 1214.844 kb on + strand, within MPMX20_01153at 1214.909 kb on + strand, within MPMX20_01153at 1215.029 kb on - strandat 1215.251 kb on - strandat 1215.443 kb on - strand, within MPMX20_01154at 1215.572 kb on + strand, within MPMX20_01154at 1215.572 kb on + strand, within MPMX20_01154at 1215.573 kb on + strand, within MPMX20_01154at 1215.580 kb on - strand, within MPMX20_01154at 1215.618 kb on - strand, within MPMX20_01154at 1215.657 kb on + strand, within MPMX20_01154at 1215.666 kb on + strand, within MPMX20_01154at 1215.666 kb on + strand, within MPMX20_01154at 1215.671 kb on + strand, within MPMX20_01154at 1215.671 kb on + strand, within MPMX20_01154at 1215.679 kb on + strand, within MPMX20_01154at 1215.679 kb on - strand, within MPMX20_01154at 1215.705 kb on - strand, within MPMX20_01154at 1215.813 kb on - strand, within MPMX20_01154at 1215.826 kb on - strand, within MPMX20_01154at 1215.828 kb on + strand, within MPMX20_01154at 1215.848 kb on - strand, within MPMX20_01154at 1215.857 kb on + strand, within MPMX20_01154at 1215.877 kb on + strand, within MPMX20_01154at 1215.886 kb on - strand, within MPMX20_01154at 1215.929 kb on - strand, within MPMX20_01154

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine (N)
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1,213,601 + +0.4
1,213,614 - +1.7
1,213,637 - -0.5
1,213,713 - -0.1
1,213,828 - MPMX20_01152 0.22 +0.7
1,213,854 + MPMX20_01152 0.25 -0.1
1,213,862 - MPMX20_01152 0.26 +1.5
1,213,889 + MPMX20_01152 0.29 -0.8
1,213,899 + MPMX20_01152 0.30 -1.9
1,213,923 + MPMX20_01152 0.33 -0.4
1,213,946 + MPMX20_01152 0.36 +0.4
1,213,946 + MPMX20_01152 0.36 +0.4
1,213,993 + MPMX20_01152 0.42 +0.4
1,213,995 - MPMX20_01152 0.42 +1.2
1,214,001 - MPMX20_01152 0.43 -0.2
1,214,001 - MPMX20_01152 0.43 -2.5
1,214,001 - MPMX20_01152 0.43 -0.0
1,214,013 - MPMX20_01152 0.44 -0.2
1,214,063 - MPMX20_01152 0.50 +0.4
1,214,135 - MPMX20_01152 0.59 -1.5
1,214,168 - MPMX20_01152 0.63 -0.1
1,214,416 - -0.0
1,214,461 - +0.2
1,214,468 + -0.8
1,214,521 + +0.4
1,214,575 + +0.6
1,214,584 + -0.7
1,214,592 - -0.1
1,214,697 + MPMX20_01153 0.34 +0.6
1,214,702 + MPMX20_01153 0.35 +0.7
1,214,712 - MPMX20_01153 0.38 +0.5
1,214,827 + MPMX20_01153 0.65 +0.0
1,214,835 - MPMX20_01153 0.67 +0.8
1,214,844 + MPMX20_01153 0.69 +0.8
1,214,909 + MPMX20_01153 0.85 +1.1
1,215,029 - -2.3
1,215,251 - +1.2
1,215,443 - MPMX20_01154 0.18 -0.0
1,215,572 + MPMX20_01154 0.29 +0.0
1,215,572 + MPMX20_01154 0.29 +0.4
1,215,573 + MPMX20_01154 0.29 +0.6
1,215,580 - MPMX20_01154 0.29 -0.6
1,215,618 - MPMX20_01154 0.32 -0.3
1,215,657 + MPMX20_01154 0.36 -0.5
1,215,666 + MPMX20_01154 0.37 +1.2
1,215,666 + MPMX20_01154 0.37 -1.7
1,215,671 + MPMX20_01154 0.37 -0.0
1,215,671 + MPMX20_01154 0.37 +1.4
1,215,679 + MPMX20_01154 0.38 +1.0
1,215,679 - MPMX20_01154 0.38 -1.4
1,215,705 - MPMX20_01154 0.40 +0.4
1,215,813 - MPMX20_01154 0.49 -0.0
1,215,826 - MPMX20_01154 0.50 -1.9
1,215,828 + MPMX20_01154 0.50 -0.7
1,215,848 - MPMX20_01154 0.52 -0.1
1,215,857 + MPMX20_01154 0.53 -0.2
1,215,877 + MPMX20_01154 0.55 -0.3
1,215,886 - MPMX20_01154 0.55 +1.2
1,215,929 - MPMX20_01154 0.59 +0.7

Or see this region's nucleotide sequence