Experiment: Cytidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01152 and MPMX20_01153 are separated by 73 nucleotides MPMX20_01153 and MPMX20_01154 are separated by 263 nucleotides
MPMX20_01152: MPMX20_01152 - 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase, at 1,213,646 to 1,214,479
_01152
MPMX20_01153: MPMX20_01153 - HTH-type transcriptional activator RhaS, at 1,214,553 to 1,214,972
_01153
MPMX20_01154: MPMX20_01154 - Multidrug resistance protein MdtE, at 1,215,236 to 1,216,411
_01154
Position (kb)
1214
1215 Strain fitness (log2 ratio)
-2
-1
0
1 at 1213.601 kb on + strand at 1213.614 kb on - strand at 1213.637 kb on - strand at 1213.713 kb on - strand at 1213.828 kb on - strand, within MPMX20_01152 at 1213.854 kb on + strand, within MPMX20_01152 at 1213.862 kb on - strand, within MPMX20_01152 at 1213.889 kb on + strand, within MPMX20_01152 at 1213.899 kb on + strand, within MPMX20_01152 at 1213.923 kb on + strand, within MPMX20_01152 at 1213.946 kb on + strand, within MPMX20_01152 at 1213.946 kb on + strand, within MPMX20_01152 at 1213.993 kb on + strand, within MPMX20_01152 at 1213.995 kb on - strand, within MPMX20_01152 at 1214.001 kb on - strand, within MPMX20_01152 at 1214.001 kb on - strand, within MPMX20_01152 at 1214.001 kb on - strand, within MPMX20_01152 at 1214.013 kb on - strand, within MPMX20_01152 at 1214.063 kb on - strand, within MPMX20_01152 at 1214.135 kb on - strand, within MPMX20_01152 at 1214.168 kb on - strand, within MPMX20_01152 at 1214.416 kb on - strand at 1214.461 kb on - strand at 1214.468 kb on + strand at 1214.521 kb on + strand at 1214.575 kb on + strand at 1214.584 kb on + strand at 1214.592 kb on - strand at 1214.697 kb on + strand, within MPMX20_01153 at 1214.702 kb on + strand, within MPMX20_01153 at 1214.712 kb on - strand, within MPMX20_01153 at 1214.827 kb on + strand, within MPMX20_01153 at 1214.835 kb on - strand, within MPMX20_01153 at 1214.844 kb on + strand, within MPMX20_01153 at 1214.909 kb on + strand, within MPMX20_01153 at 1215.029 kb on - strand at 1215.251 kb on - strand at 1215.443 kb on - strand, within MPMX20_01154 at 1215.572 kb on + strand, within MPMX20_01154 at 1215.572 kb on + strand, within MPMX20_01154 at 1215.573 kb on + strand, within MPMX20_01154 at 1215.580 kb on - strand, within MPMX20_01154 at 1215.618 kb on - strand, within MPMX20_01154 at 1215.657 kb on + strand, within MPMX20_01154 at 1215.666 kb on + strand, within MPMX20_01154 at 1215.666 kb on + strand, within MPMX20_01154 at 1215.671 kb on + strand, within MPMX20_01154 at 1215.671 kb on + strand, within MPMX20_01154 at 1215.679 kb on + strand, within MPMX20_01154 at 1215.679 kb on - strand, within MPMX20_01154 at 1215.705 kb on - strand, within MPMX20_01154 at 1215.813 kb on - strand, within MPMX20_01154 at 1215.826 kb on - strand, within MPMX20_01154 at 1215.828 kb on + strand, within MPMX20_01154 at 1215.848 kb on - strand, within MPMX20_01154 at 1215.857 kb on + strand, within MPMX20_01154 at 1215.877 kb on + strand, within MPMX20_01154 at 1215.886 kb on - strand, within MPMX20_01154 at 1215.929 kb on - strand, within MPMX20_01154
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine (N) remove 1,213,601 + +0.4 1,213,614 - +1.7 1,213,637 - -0.5 1,213,713 - -0.1 1,213,828 - MPMX20_01152 0.22 +0.7 1,213,854 + MPMX20_01152 0.25 -0.1 1,213,862 - MPMX20_01152 0.26 +1.5 1,213,889 + MPMX20_01152 0.29 -0.8 1,213,899 + MPMX20_01152 0.30 -1.9 1,213,923 + MPMX20_01152 0.33 -0.4 1,213,946 + MPMX20_01152 0.36 +0.4 1,213,946 + MPMX20_01152 0.36 +0.4 1,213,993 + MPMX20_01152 0.42 +0.4 1,213,995 - MPMX20_01152 0.42 +1.2 1,214,001 - MPMX20_01152 0.43 -0.2 1,214,001 - MPMX20_01152 0.43 -2.5 1,214,001 - MPMX20_01152 0.43 -0.0 1,214,013 - MPMX20_01152 0.44 -0.2 1,214,063 - MPMX20_01152 0.50 +0.4 1,214,135 - MPMX20_01152 0.59 -1.5 1,214,168 - MPMX20_01152 0.63 -0.1 1,214,416 - -0.0 1,214,461 - +0.2 1,214,468 + -0.8 1,214,521 + +0.4 1,214,575 + +0.6 1,214,584 + -0.7 1,214,592 - -0.1 1,214,697 + MPMX20_01153 0.34 +0.6 1,214,702 + MPMX20_01153 0.35 +0.7 1,214,712 - MPMX20_01153 0.38 +0.5 1,214,827 + MPMX20_01153 0.65 +0.0 1,214,835 - MPMX20_01153 0.67 +0.8 1,214,844 + MPMX20_01153 0.69 +0.8 1,214,909 + MPMX20_01153 0.85 +1.1 1,215,029 - -2.3 1,215,251 - +1.2 1,215,443 - MPMX20_01154 0.18 -0.0 1,215,572 + MPMX20_01154 0.29 +0.0 1,215,572 + MPMX20_01154 0.29 +0.4 1,215,573 + MPMX20_01154 0.29 +0.6 1,215,580 - MPMX20_01154 0.29 -0.6 1,215,618 - MPMX20_01154 0.32 -0.3 1,215,657 + MPMX20_01154 0.36 -0.5 1,215,666 + MPMX20_01154 0.37 +1.2 1,215,666 + MPMX20_01154 0.37 -1.7 1,215,671 + MPMX20_01154 0.37 -0.0 1,215,671 + MPMX20_01154 0.37 +1.4 1,215,679 + MPMX20_01154 0.38 +1.0 1,215,679 - MPMX20_01154 0.38 -1.4 1,215,705 - MPMX20_01154 0.40 +0.4 1,215,813 - MPMX20_01154 0.49 -0.0 1,215,826 - MPMX20_01154 0.50 -1.9 1,215,828 + MPMX20_01154 0.50 -0.7 1,215,848 - MPMX20_01154 0.52 -0.1 1,215,857 + MPMX20_01154 0.53 -0.2 1,215,877 + MPMX20_01154 0.55 -0.3 1,215,886 - MPMX20_01154 0.55 +1.2 1,215,929 - MPMX20_01154 0.59 +0.7
Or see this region's nucleotide sequence