Experiment: Cytidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01041 and MPMX20_01042 are separated by 222 nucleotides MPMX20_01042 and MPMX20_01043 are separated by 35 nucleotides
MPMX20_01041: MPMX20_01041 - Multidrug resistance-like ATP-binding protein MdlB, at 1,096,893 to 1,098,674
_01041
MPMX20_01042: MPMX20_01042 - Nitrogen regulatory protein P-II 2, at 1,098,897 to 1,099,235
_01042
MPMX20_01043: MPMX20_01043 - Ammonia channel, at 1,099,271 to 1,100,557
_01043
Position (kb)
1098
1099
1100 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1097.927 kb on + strand, within MPMX20_01041 at 1097.977 kb on - strand, within MPMX20_01041 at 1097.995 kb on + strand, within MPMX20_01041 at 1098.050 kb on + strand, within MPMX20_01041 at 1098.058 kb on - strand, within MPMX20_01041 at 1098.118 kb on + strand, within MPMX20_01041 at 1098.192 kb on + strand, within MPMX20_01041 at 1098.201 kb on - strand, within MPMX20_01041 at 1098.211 kb on + strand, within MPMX20_01041 at 1098.227 kb on + strand, within MPMX20_01041 at 1098.239 kb on + strand, within MPMX20_01041 at 1098.247 kb on - strand, within MPMX20_01041 at 1098.252 kb on - strand, within MPMX20_01041 at 1098.282 kb on + strand, within MPMX20_01041 at 1098.313 kb on + strand, within MPMX20_01041 at 1098.320 kb on - strand, within MPMX20_01041 at 1098.341 kb on + strand, within MPMX20_01041 at 1098.429 kb on - strand, within MPMX20_01041 at 1098.524 kb on - strand at 1098.545 kb on + strand at 1098.557 kb on - strand at 1098.573 kb on - strand at 1098.905 kb on + strand at 1099.039 kb on + strand, within MPMX20_01042 at 1099.039 kb on + strand, within MPMX20_01042 at 1099.041 kb on + strand, within MPMX20_01042 at 1099.041 kb on + strand, within MPMX20_01042 at 1099.044 kb on + strand, within MPMX20_01042 at 1099.047 kb on - strand, within MPMX20_01042 at 1099.059 kb on - strand, within MPMX20_01042 at 1099.230 kb on + strand at 1099.251 kb on + strand at 1099.251 kb on + strand at 1099.253 kb on + strand at 1099.259 kb on - strand at 1099.261 kb on - strand at 1099.261 kb on - strand at 1099.313 kb on + strand at 1099.391 kb on - strand at 1099.426 kb on + strand, within MPMX20_01043 at 1099.426 kb on + strand, within MPMX20_01043 at 1099.426 kb on + strand, within MPMX20_01043 at 1099.426 kb on + strand, within MPMX20_01043 at 1099.426 kb on + strand, within MPMX20_01043 at 1099.426 kb on + strand, within MPMX20_01043 at 1099.426 kb on + strand, within MPMX20_01043 at 1099.426 kb on + strand, within MPMX20_01043 at 1099.434 kb on - strand, within MPMX20_01043 at 1099.434 kb on - strand, within MPMX20_01043 at 1099.434 kb on - strand, within MPMX20_01043 at 1099.434 kb on - strand, within MPMX20_01043 at 1099.434 kb on - strand, within MPMX20_01043 at 1099.434 kb on - strand, within MPMX20_01043 at 1099.434 kb on - strand, within MPMX20_01043 at 1099.434 kb on - strand, within MPMX20_01043 at 1099.444 kb on - strand, within MPMX20_01043 at 1099.506 kb on - strand, within MPMX20_01043 at 1099.506 kb on - strand, within MPMX20_01043 at 1099.524 kb on - strand, within MPMX20_01043 at 1099.723 kb on - strand, within MPMX20_01043 at 1099.725 kb on + strand, within MPMX20_01043 at 1099.743 kb on - strand, within MPMX20_01043 at 1099.743 kb on - strand, within MPMX20_01043 at 1099.743 kb on - strand, within MPMX20_01043 at 1099.760 kb on - strand, within MPMX20_01043 at 1099.774 kb on + strand, within MPMX20_01043 at 1099.816 kb on - strand, within MPMX20_01043 at 1099.835 kb on + strand, within MPMX20_01043 at 1099.838 kb on - strand, within MPMX20_01043 at 1099.848 kb on - strand, within MPMX20_01043 at 1099.869 kb on + strand, within MPMX20_01043 at 1099.877 kb on - strand, within MPMX20_01043 at 1099.877 kb on - strand, within MPMX20_01043 at 1099.903 kb on - strand, within MPMX20_01043 at 1099.927 kb on - strand, within MPMX20_01043 at 1099.937 kb on + strand, within MPMX20_01043 at 1099.962 kb on + strand, within MPMX20_01043 at 1100.018 kb on + strand, within MPMX20_01043 at 1100.023 kb on + strand, within MPMX20_01043 at 1100.026 kb on - strand, within MPMX20_01043 at 1100.044 kb on + strand, within MPMX20_01043 at 1100.047 kb on - strand, within MPMX20_01043 at 1100.054 kb on + strand, within MPMX20_01043 at 1100.075 kb on - strand, within MPMX20_01043 at 1100.095 kb on + strand, within MPMX20_01043 at 1100.095 kb on + strand, within MPMX20_01043 at 1100.101 kb on + strand, within MPMX20_01043 at 1100.103 kb on - strand, within MPMX20_01043 at 1100.121 kb on + strand, within MPMX20_01043 at 1100.151 kb on - strand, within MPMX20_01043 at 1100.154 kb on + strand, within MPMX20_01043
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine (N) remove 1,097,927 + MPMX20_01041 0.58 +0.0 1,097,977 - MPMX20_01041 0.61 +0.3 1,097,995 + MPMX20_01041 0.62 -0.3 1,098,050 + MPMX20_01041 0.65 +1.3 1,098,058 - MPMX20_01041 0.65 -0.6 1,098,118 + MPMX20_01041 0.69 -1.8 1,098,192 + MPMX20_01041 0.73 -1.6 1,098,201 - MPMX20_01041 0.73 +1.1 1,098,211 + MPMX20_01041 0.74 -1.1 1,098,227 + MPMX20_01041 0.75 +0.4 1,098,239 + MPMX20_01041 0.76 -1.7 1,098,247 - MPMX20_01041 0.76 +0.5 1,098,252 - MPMX20_01041 0.76 -0.3 1,098,282 + MPMX20_01041 0.78 -0.7 1,098,313 + MPMX20_01041 0.80 +0.2 1,098,320 - MPMX20_01041 0.80 +0.4 1,098,341 + MPMX20_01041 0.81 -1.2 1,098,429 - MPMX20_01041 0.86 +1.4 1,098,524 - -1.3 1,098,545 + -0.1 1,098,557 - -0.8 1,098,573 - +0.7 1,098,905 + -2.2 1,099,039 + MPMX20_01042 0.42 -2.7 1,099,039 + MPMX20_01042 0.42 -3.5 1,099,041 + MPMX20_01042 0.42 -4.0 1,099,041 + MPMX20_01042 0.42 -1.9 1,099,044 + MPMX20_01042 0.43 -3.5 1,099,047 - MPMX20_01042 0.44 -1.2 1,099,059 - MPMX20_01042 0.48 -0.8 1,099,230 + -2.4 1,099,251 + -0.2 1,099,251 + -2.3 1,099,253 + -0.6 1,099,259 - -1.0 1,099,261 - -2.2 1,099,261 - -1.5 1,099,313 + -1.2 1,099,391 - -0.7 1,099,426 + MPMX20_01043 0.12 -2.8 1,099,426 + MPMX20_01043 0.12 -1.9 1,099,426 + MPMX20_01043 0.12 -1.0 1,099,426 + MPMX20_01043 0.12 -0.7 1,099,426 + MPMX20_01043 0.12 -0.2 1,099,426 + MPMX20_01043 0.12 -3.5 1,099,426 + MPMX20_01043 0.12 -1.0 1,099,426 + MPMX20_01043 0.12 -3.1 1,099,434 - MPMX20_01043 0.13 -2.6 1,099,434 - MPMX20_01043 0.13 -0.1 1,099,434 - MPMX20_01043 0.13 -0.5 1,099,434 - MPMX20_01043 0.13 -1.8 1,099,434 - MPMX20_01043 0.13 -1.0 1,099,434 - MPMX20_01043 0.13 -2.7 1,099,434 - MPMX20_01043 0.13 -1.3 1,099,434 - MPMX20_01043 0.13 -0.8 1,099,444 - MPMX20_01043 0.13 -1.6 1,099,506 - MPMX20_01043 0.18 -0.8 1,099,506 - MPMX20_01043 0.18 -1.7 1,099,524 - MPMX20_01043 0.20 -1.7 1,099,723 - MPMX20_01043 0.35 -0.3 1,099,725 + MPMX20_01043 0.35 -1.7 1,099,743 - MPMX20_01043 0.37 -0.8 1,099,743 - MPMX20_01043 0.37 -1.3 1,099,743 - MPMX20_01043 0.37 -2.0 1,099,760 - MPMX20_01043 0.38 -1.8 1,099,774 + MPMX20_01043 0.39 -1.8 1,099,816 - MPMX20_01043 0.42 -2.3 1,099,835 + MPMX20_01043 0.44 -1.0 1,099,838 - MPMX20_01043 0.44 -3.2 1,099,848 - MPMX20_01043 0.45 -1.2 1,099,869 + MPMX20_01043 0.46 -1.3 1,099,877 - MPMX20_01043 0.47 -1.0 1,099,877 - MPMX20_01043 0.47 -0.3 1,099,903 - MPMX20_01043 0.49 -2.1 1,099,927 - MPMX20_01043 0.51 -0.2 1,099,937 + MPMX20_01043 0.52 -1.0 1,099,962 + MPMX20_01043 0.54 -1.7 1,100,018 + MPMX20_01043 0.58 -3.1 1,100,023 + MPMX20_01043 0.58 -3.5 1,100,026 - MPMX20_01043 0.59 -2.0 1,100,044 + MPMX20_01043 0.60 -0.9 1,100,047 - MPMX20_01043 0.60 -2.9 1,100,054 + MPMX20_01043 0.61 -3.2 1,100,075 - MPMX20_01043 0.62 -0.7 1,100,095 + MPMX20_01043 0.64 -1.9 1,100,095 + MPMX20_01043 0.64 +0.3 1,100,101 + MPMX20_01043 0.64 -3.1 1,100,103 - MPMX20_01043 0.65 -2.6 1,100,121 + MPMX20_01043 0.66 -0.5 1,100,151 - MPMX20_01043 0.68 -0.3 1,100,154 + MPMX20_01043 0.69 -2.1
Or see this region's nucleotide sequence