Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00897

Experiment: Cytidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00896 and MPMX20_00897 are separated by 68 nucleotidesMPMX20_00897 and MPMX20_00898 are separated by 32 nucleotidesMPMX20_00898 and MPMX20_00899 are separated by 0 nucleotides MPMX20_00896: MPMX20_00896 - Membrane-bound lytic murein transglycosylase D, at 944,526 to 945,890 _00896 MPMX20_00897: MPMX20_00897 - Hydroxyacylglutathione hydrolase GloB, at 945,959 to 946,717 _00897 MPMX20_00898: MPMX20_00898 - hypothetical protein, at 946,750 to 947,466 _00898 MPMX20_00899: MPMX20_00899 - Ribonuclease HI, at 947,467 to 947,934 _00899 Position (kb) 945 946 947Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 944.966 kb on + strand, within MPMX20_00896at 944.966 kb on + strand, within MPMX20_00896at 944.974 kb on - strand, within MPMX20_00896at 944.976 kb on - strand, within MPMX20_00896at 944.991 kb on - strand, within MPMX20_00896at 944.996 kb on + strand, within MPMX20_00896at 945.004 kb on - strand, within MPMX20_00896at 945.122 kb on - strand, within MPMX20_00896at 945.122 kb on - strand, within MPMX20_00896at 945.124 kb on + strand, within MPMX20_00896at 945.127 kb on + strand, within MPMX20_00896at 945.134 kb on + strand, within MPMX20_00896at 945.134 kb on + strand, within MPMX20_00896at 945.135 kb on - strand, within MPMX20_00896at 945.140 kb on - strand, within MPMX20_00896at 945.285 kb on + strand, within MPMX20_00896at 945.286 kb on - strand, within MPMX20_00896at 945.297 kb on + strand, within MPMX20_00896at 945.297 kb on + strand, within MPMX20_00896at 945.297 kb on + strand, within MPMX20_00896at 945.297 kb on + strand, within MPMX20_00896at 945.297 kb on + strand, within MPMX20_00896at 945.297 kb on + strand, within MPMX20_00896at 945.297 kb on + strand, within MPMX20_00896at 945.297 kb on + strand, within MPMX20_00896at 945.297 kb on + strand, within MPMX20_00896at 945.297 kb on + strand, within MPMX20_00896at 945.297 kb on + strand, within MPMX20_00896at 945.297 kb on + strand, within MPMX20_00896at 945.303 kb on - strand, within MPMX20_00896at 945.303 kb on - strand, within MPMX20_00896at 945.305 kb on - strand, within MPMX20_00896at 945.305 kb on - strand, within MPMX20_00896at 945.305 kb on - strand, within MPMX20_00896at 945.305 kb on - strand, within MPMX20_00896at 945.305 kb on - strand, within MPMX20_00896at 945.305 kb on - strand, within MPMX20_00896at 945.305 kb on - strand, within MPMX20_00896at 945.305 kb on - strand, within MPMX20_00896at 945.305 kb on - strand, within MPMX20_00896at 945.305 kb on - strand, within MPMX20_00896at 945.305 kb on - strand, within MPMX20_00896at 945.305 kb on - strand, within MPMX20_00896at 945.305 kb on - strand, within MPMX20_00896at 945.409 kb on - strand, within MPMX20_00896at 945.497 kb on + strand, within MPMX20_00896at 945.505 kb on - strand, within MPMX20_00896at 945.505 kb on - strand, within MPMX20_00896at 945.519 kb on + strand, within MPMX20_00896at 945.560 kb on - strand, within MPMX20_00896at 945.585 kb on - strand, within MPMX20_00896at 945.588 kb on - strand, within MPMX20_00896at 945.607 kb on - strand, within MPMX20_00896at 945.700 kb on - strand, within MPMX20_00896at 945.703 kb on + strand, within MPMX20_00896at 945.703 kb on + strand, within MPMX20_00896at 945.712 kb on + strand, within MPMX20_00896at 945.768 kb on - strandat 945.788 kb on - strandat 945.788 kb on - strandat 945.788 kb on - strandat 945.808 kb on - strandat 945.815 kb on + strandat 945.815 kb on + strandat 945.815 kb on + strandat 945.815 kb on + strandat 945.815 kb on + strandat 945.815 kb on + strandat 945.823 kb on - strandat 945.847 kb on + strandat 945.855 kb on - strandat 945.855 kb on - strandat 945.857 kb on + strandat 945.862 kb on + strandat 945.865 kb on - strandat 945.896 kb on + strandat 945.904 kb on - strandat 945.968 kb on + strandat 946.056 kb on - strand, within MPMX20_00897at 946.144 kb on - strand, within MPMX20_00897at 946.266 kb on - strand, within MPMX20_00897at 946.283 kb on + strand, within MPMX20_00897at 946.291 kb on - strand, within MPMX20_00897at 946.390 kb on + strand, within MPMX20_00897at 946.390 kb on + strand, within MPMX20_00897at 946.454 kb on - strand, within MPMX20_00897at 946.467 kb on + strand, within MPMX20_00897at 946.544 kb on - strand, within MPMX20_00897at 946.567 kb on + strand, within MPMX20_00897at 946.570 kb on - strand, within MPMX20_00897at 946.583 kb on - strand, within MPMX20_00897at 946.693 kb on - strandat 946.711 kb on + strandat 946.749 kb on + strandat 946.786 kb on + strandat 946.806 kb on + strandat 946.812 kb on + strandat 946.814 kb on - strandat 946.814 kb on - strandat 946.814 kb on - strandat 946.814 kb on - strandat 946.814 kb on - strandat 946.833 kb on + strand, within MPMX20_00898at 946.837 kb on + strand, within MPMX20_00898at 946.884 kb on + strand, within MPMX20_00898at 946.928 kb on + strand, within MPMX20_00898at 946.936 kb on - strand, within MPMX20_00898at 946.944 kb on + strand, within MPMX20_00898at 946.947 kb on - strand, within MPMX20_00898at 946.951 kb on - strand, within MPMX20_00898at 946.972 kb on + strand, within MPMX20_00898at 946.972 kb on + strand, within MPMX20_00898at 947.143 kb on + strand, within MPMX20_00898at 947.157 kb on + strand, within MPMX20_00898at 947.178 kb on + strand, within MPMX20_00898at 947.208 kb on + strand, within MPMX20_00898at 947.216 kb on - strand, within MPMX20_00898at 947.249 kb on + strand, within MPMX20_00898at 947.311 kb on + strand, within MPMX20_00898at 947.311 kb on + strand, within MPMX20_00898at 947.314 kb on - strand, within MPMX20_00898at 947.342 kb on + strand, within MPMX20_00898at 947.349 kb on + strand, within MPMX20_00898at 947.491 kb on + strandat 947.504 kb on + strandat 947.575 kb on - strand, within MPMX20_00899at 947.576 kb on - strand, within MPMX20_00899at 947.707 kb on - strand, within MPMX20_00899

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine (N)
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944,966 + MPMX20_00896 0.32 +1.6
944,966 + MPMX20_00896 0.32 +0.1
944,974 - MPMX20_00896 0.33 -0.4
944,976 - MPMX20_00896 0.33 +0.3
944,991 - MPMX20_00896 0.34 -1.0
944,996 + MPMX20_00896 0.34 -1.0
945,004 - MPMX20_00896 0.35 +0.3
945,122 - MPMX20_00896 0.44 -1.8
945,122 - MPMX20_00896 0.44 +1.2
945,124 + MPMX20_00896 0.44 -0.7
945,127 + MPMX20_00896 0.44 +0.3
945,134 + MPMX20_00896 0.45 -0.1
945,134 + MPMX20_00896 0.45 -1.0
945,135 - MPMX20_00896 0.45 +0.7
945,140 - MPMX20_00896 0.45 -0.6
945,285 + MPMX20_00896 0.56 -1.2
945,286 - MPMX20_00896 0.56 -0.6
945,297 + MPMX20_00896 0.56 +0.5
945,297 + MPMX20_00896 0.56 -1.5
945,297 + MPMX20_00896 0.56 +0.8
945,297 + MPMX20_00896 0.56 -1.7
945,297 + MPMX20_00896 0.56 -0.2
945,297 + MPMX20_00896 0.56 +0.0
945,297 + MPMX20_00896 0.56 +0.2
945,297 + MPMX20_00896 0.56 -1.4
945,297 + MPMX20_00896 0.56 +0.8
945,297 + MPMX20_00896 0.56 -1.0
945,297 + MPMX20_00896 0.56 -0.7
945,297 + MPMX20_00896 0.56 +0.7
945,303 - MPMX20_00896 0.57 -0.1
945,303 - MPMX20_00896 0.57 +0.4
945,305 - MPMX20_00896 0.57 -1.2
945,305 - MPMX20_00896 0.57 +1.6
945,305 - MPMX20_00896 0.57 -0.9
945,305 - MPMX20_00896 0.57 +0.5
945,305 - MPMX20_00896 0.57 -1.8
945,305 - MPMX20_00896 0.57 -2.1
945,305 - MPMX20_00896 0.57 +0.5
945,305 - MPMX20_00896 0.57 -0.6
945,305 - MPMX20_00896 0.57 -1.8
945,305 - MPMX20_00896 0.57 +0.6
945,305 - MPMX20_00896 0.57 +0.2
945,305 - MPMX20_00896 0.57 -1.7
945,305 - MPMX20_00896 0.57 -1.1
945,409 - MPMX20_00896 0.65 -1.1
945,497 + MPMX20_00896 0.71 -1.7
945,505 - MPMX20_00896 0.72 -0.3
945,505 - MPMX20_00896 0.72 -0.1
945,519 + MPMX20_00896 0.73 -1.5
945,560 - MPMX20_00896 0.76 +0.7
945,585 - MPMX20_00896 0.78 -1.2
945,588 - MPMX20_00896 0.78 -3.2
945,607 - MPMX20_00896 0.79 -1.3
945,700 - MPMX20_00896 0.86 -2.7
945,703 + MPMX20_00896 0.86 +2.0
945,703 + MPMX20_00896 0.86 -0.1
945,712 + MPMX20_00896 0.87 -0.4
945,768 - -1.7
945,788 - +0.8
945,788 - -0.0
945,788 - +0.7
945,808 - +1.3
945,815 + -0.5
945,815 + +1.5
945,815 + +0.0
945,815 + +0.5
945,815 + +2.0
945,815 + -2.2
945,823 - +0.9
945,847 + -0.7
945,855 - -1.1
945,855 - +0.3
945,857 + -2.3
945,862 + -0.2
945,865 - -0.2
945,896 + +0.2
945,904 - +0.4
945,968 + -1.9
946,056 - MPMX20_00897 0.13 -2.2
946,144 - MPMX20_00897 0.24 +0.7
946,266 - MPMX20_00897 0.40 +0.2
946,283 + MPMX20_00897 0.43 -0.4
946,291 - MPMX20_00897 0.44 +2.0
946,390 + MPMX20_00897 0.57 -0.7
946,390 + MPMX20_00897 0.57 +1.3
946,454 - MPMX20_00897 0.65 +1.0
946,467 + MPMX20_00897 0.67 -0.8
946,544 - MPMX20_00897 0.77 +0.8
946,567 + MPMX20_00897 0.80 -1.8
946,570 - MPMX20_00897 0.81 +1.6
946,583 - MPMX20_00897 0.82 +2.6
946,693 - -1.4
946,711 + -1.6
946,749 + +0.3
946,786 + -0.3
946,806 + +0.3
946,812 + -0.3
946,814 - +0.2
946,814 - -0.4
946,814 - -0.3
946,814 - -0.6
946,814 - +0.5
946,833 + MPMX20_00898 0.12 -2.0
946,837 + MPMX20_00898 0.12 +1.1
946,884 + MPMX20_00898 0.19 +0.6
946,928 + MPMX20_00898 0.25 -1.2
946,936 - MPMX20_00898 0.26 +1.2
946,944 + MPMX20_00898 0.27 +0.2
946,947 - MPMX20_00898 0.27 +2.0
946,951 - MPMX20_00898 0.28 +0.5
946,972 + MPMX20_00898 0.31 -1.1
946,972 + MPMX20_00898 0.31 +0.3
947,143 + MPMX20_00898 0.55 -0.1
947,157 + MPMX20_00898 0.57 +2.0
947,178 + MPMX20_00898 0.60 -0.9
947,208 + MPMX20_00898 0.64 -1.2
947,216 - MPMX20_00898 0.65 +1.3
947,249 + MPMX20_00898 0.70 +0.1
947,311 + MPMX20_00898 0.78 +0.8
947,311 + MPMX20_00898 0.78 +1.9
947,314 - MPMX20_00898 0.79 -0.6
947,342 + MPMX20_00898 0.83 +1.0
947,349 + MPMX20_00898 0.84 +0.9
947,491 + -0.1
947,504 + -0.3
947,575 - MPMX20_00899 0.23 -0.3
947,576 - MPMX20_00899 0.23 -1.7
947,707 - MPMX20_00899 0.51 +3.0

Or see this region's nucleotide sequence