Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00617

Experiment: Cytidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00615 and MPMX20_00616 are separated by 108 nucleotidesMPMX20_00616 and MPMX20_00617 overlap by 8 nucleotidesMPMX20_00617 and MPMX20_00618 overlap by 8 nucleotidesMPMX20_00618 and MPMX20_00619 are separated by 135 nucleotides MPMX20_00615: MPMX20_00615 - Putative aldehyde dehydrogenase, at 641,136 to 642,551 _00615 MPMX20_00616: MPMX20_00616 - putative protein YqjZ, at 642,660 to 642,983 _00616 MPMX20_00617: MPMX20_00617 - hypothetical protein, at 642,976 to 643,353 _00617 MPMX20_00618: MPMX20_00618 - hypothetical protein, at 643,346 to 644,041 _00618 MPMX20_00619: MPMX20_00619 - Transcriptional regulator SlyA, at 644,177 to 644,647 _00619 Position (kb) 642 643 644Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 642.068 kb on + strand, within MPMX20_00615at 642.068 kb on + strand, within MPMX20_00615at 642.090 kb on - strand, within MPMX20_00615at 642.125 kb on + strand, within MPMX20_00615at 642.125 kb on + strand, within MPMX20_00615at 642.126 kb on + strand, within MPMX20_00615at 642.154 kb on + strand, within MPMX20_00615at 642.235 kb on - strand, within MPMX20_00615at 642.277 kb on + strand, within MPMX20_00615at 642.277 kb on + strand, within MPMX20_00615at 642.285 kb on - strand, within MPMX20_00615at 642.285 kb on - strand, within MPMX20_00615at 642.285 kb on - strand, within MPMX20_00615at 642.311 kb on + strand, within MPMX20_00615at 642.326 kb on - strand, within MPMX20_00615at 642.343 kb on + strand, within MPMX20_00615at 642.351 kb on - strand, within MPMX20_00615at 642.351 kb on - strand, within MPMX20_00615at 642.559 kb on - strandat 642.566 kb on + strandat 642.566 kb on + strandat 642.664 kb on + strandat 642.740 kb on - strand, within MPMX20_00616at 642.977 kb on + strandat 642.977 kb on + strandat 643.052 kb on + strand, within MPMX20_00617at 643.134 kb on + strand, within MPMX20_00617at 643.142 kb on - strand, within MPMX20_00617at 643.145 kb on + strand, within MPMX20_00617at 643.160 kb on - strand, within MPMX20_00617at 643.160 kb on - strand, within MPMX20_00617at 643.207 kb on - strand, within MPMX20_00617at 643.228 kb on + strand, within MPMX20_00617at 643.255 kb on - strand, within MPMX20_00617at 643.260 kb on - strand, within MPMX20_00617at 643.323 kb on + strandat 643.326 kb on - strandat 643.332 kb on + strandat 643.332 kb on + strandat 643.334 kb on - strandat 643.340 kb on - strandat 643.375 kb on - strandat 643.468 kb on + strand, within MPMX20_00618at 643.479 kb on + strand, within MPMX20_00618at 643.479 kb on + strand, within MPMX20_00618at 643.487 kb on - strand, within MPMX20_00618at 643.487 kb on - strand, within MPMX20_00618at 643.529 kb on + strand, within MPMX20_00618at 643.604 kb on + strand, within MPMX20_00618at 643.604 kb on + strand, within MPMX20_00618at 643.604 kb on + strand, within MPMX20_00618at 643.633 kb on + strand, within MPMX20_00618at 643.633 kb on + strand, within MPMX20_00618at 643.763 kb on + strand, within MPMX20_00618at 643.788 kb on + strand, within MPMX20_00618at 643.788 kb on + strand, within MPMX20_00618at 643.788 kb on + strand, within MPMX20_00618at 643.796 kb on - strand, within MPMX20_00618at 643.796 kb on - strand, within MPMX20_00618at 643.796 kb on - strand, within MPMX20_00618at 643.796 kb on - strand, within MPMX20_00618at 643.796 kb on - strand, within MPMX20_00618at 643.812 kb on - strand, within MPMX20_00618at 643.812 kb on - strand, within MPMX20_00618at 643.817 kb on - strand, within MPMX20_00618at 643.822 kb on + strand, within MPMX20_00618at 643.878 kb on + strand, within MPMX20_00618at 643.878 kb on + strand, within MPMX20_00618at 643.886 kb on - strand, within MPMX20_00618at 644.192 kb on - strandat 644.280 kb on + strand, within MPMX20_00619at 644.280 kb on + strand, within MPMX20_00619at 644.287 kb on - strand, within MPMX20_00619

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine (N)
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642,068 + MPMX20_00615 0.66 +0.2
642,068 + MPMX20_00615 0.66 +1.0
642,090 - MPMX20_00615 0.67 +1.5
642,125 + MPMX20_00615 0.70 +0.3
642,125 + MPMX20_00615 0.70 -0.1
642,126 + MPMX20_00615 0.70 -3.9
642,154 + MPMX20_00615 0.72 +0.4
642,235 - MPMX20_00615 0.78 +0.1
642,277 + MPMX20_00615 0.81 -0.2
642,277 + MPMX20_00615 0.81 -1.4
642,285 - MPMX20_00615 0.81 +0.6
642,285 - MPMX20_00615 0.81 -0.6
642,285 - MPMX20_00615 0.81 -0.7
642,311 + MPMX20_00615 0.83 -0.2
642,326 - MPMX20_00615 0.84 -0.3
642,343 + MPMX20_00615 0.85 -2.3
642,351 - MPMX20_00615 0.86 -0.7
642,351 - MPMX20_00615 0.86 +0.3
642,559 - -0.7
642,566 + +0.6
642,566 + -1.0
642,664 + -0.2
642,740 - MPMX20_00616 0.25 +1.1
642,977 + +0.4
642,977 + +1.2
643,052 + MPMX20_00617 0.20 +0.3
643,134 + MPMX20_00617 0.42 +1.6
643,142 - MPMX20_00617 0.44 +0.0
643,145 + MPMX20_00617 0.45 +0.4
643,160 - MPMX20_00617 0.49 +0.4
643,160 - MPMX20_00617 0.49 +0.3
643,207 - MPMX20_00617 0.61 -0.2
643,228 + MPMX20_00617 0.67 -3.1
643,255 - MPMX20_00617 0.74 +0.0
643,260 - MPMX20_00617 0.75 +0.6
643,323 + -0.5
643,326 - -3.1
643,332 + +0.6
643,332 + +1.0
643,334 - +0.6
643,340 - -0.7
643,375 - +0.4
643,468 + MPMX20_00618 0.18 +0.2
643,479 + MPMX20_00618 0.19 +0.7
643,479 + MPMX20_00618 0.19 -1.4
643,487 - MPMX20_00618 0.20 -0.2
643,487 - MPMX20_00618 0.20 -0.4
643,529 + MPMX20_00618 0.26 +0.1
643,604 + MPMX20_00618 0.37 -0.3
643,604 + MPMX20_00618 0.37 -0.6
643,604 + MPMX20_00618 0.37 -1.2
643,633 + MPMX20_00618 0.41 -0.5
643,633 + MPMX20_00618 0.41 -0.7
643,763 + MPMX20_00618 0.60 +0.1
643,788 + MPMX20_00618 0.64 -0.8
643,788 + MPMX20_00618 0.64 -0.1
643,788 + MPMX20_00618 0.64 -1.2
643,796 - MPMX20_00618 0.65 -0.1
643,796 - MPMX20_00618 0.65 +2.0
643,796 - MPMX20_00618 0.65 +0.1
643,796 - MPMX20_00618 0.65 -0.6
643,796 - MPMX20_00618 0.65 +1.9
643,812 - MPMX20_00618 0.67 -1.6
643,812 - MPMX20_00618 0.67 -0.5
643,817 - MPMX20_00618 0.68 -0.1
643,822 + MPMX20_00618 0.68 -1.0
643,878 + MPMX20_00618 0.76 -0.6
643,878 + MPMX20_00618 0.76 -1.7
643,886 - MPMX20_00618 0.78 -0.2
644,192 - +2.9
644,280 + MPMX20_00619 0.22 +0.4
644,280 + MPMX20_00619 0.22 +1.6
644,287 - MPMX20_00619 0.23 -1.4

Or see this region's nucleotide sequence