Experiment: Ying_all64 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_00590 and IAI47_00595 are separated by 150 nucleotides IAI47_00595 and IAI47_00600 are separated by 49 nucleotides IAI47_00600 and IAI47_00605 are separated by 35 nucleotides IAI47_00605 and IAI47_00610 are separated by 119 nucleotides
IAI47_00590: IAI47_00590 - NupC/NupG family nucleoside CNT transporter, at 130,803 to 131,987
_00590
IAI47_00595: IAI47_00595 - ribonuclease PH, at 132,138 to 132,854
_00595
IAI47_00600: IAI47_00600 - orotate phosphoribosyltransferase, at 132,904 to 133,545
_00600
IAI47_00605: IAI47_00605 - nucleoid occlusion factor SlmA, at 133,581 to 134,177
_00605
IAI47_00610: IAI47_00610 - dUTP diphosphatase, at 134,297 to 134,755
_00610
Position (kb) 132
133
134 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 131.912 kb on + strand at 131.912 kb on + strand at 131.987 kb on + strand at 131.987 kb on + strand at 131.987 kb on + strand at 131.987 kb on + strand at 131.987 kb on + strand at 131.987 kb on + strand at 131.987 kb on + strand at 131.987 kb on + strand at 131.987 kb on + strand at 131.987 kb on + strand at 131.987 kb on + strand at 131.987 kb on + strand at 131.987 kb on + strand at 131.987 kb on + strand at 131.987 kb on + strand at 131.987 kb on + strand at 131.987 kb on + strand at 131.988 kb on - strand at 131.988 kb on - strand at 131.988 kb on - strand at 131.988 kb on - strand at 131.988 kb on - strand at 131.988 kb on - strand at 131.988 kb on - strand at 131.988 kb on - strand at 132.023 kb on + strand at 132.024 kb on - strand at 132.098 kb on + strand at 132.098 kb on + strand at 132.098 kb on + strand at 132.099 kb on - strand at 132.099 kb on - strand at 132.099 kb on - strand at 132.099 kb on - strand at 132.099 kb on - strand at 132.100 kb on + strand at 132.100 kb on + strand at 132.101 kb on - strand at 132.101 kb on - strand at 132.118 kb on + strand at 132.118 kb on + strand at 132.118 kb on + strand at 132.118 kb on + strand at 132.119 kb on - strand at 132.119 kb on - strand at 132.134 kb on - strand at 132.134 kb on - strand at 132.134 kb on - strand at 132.134 kb on - strand at 132.195 kb on + strand at 132.196 kb on - strand at 132.196 kb on - strand at 132.196 kb on - strand at 132.266 kb on - strand, within IAI47_00595 at 132.266 kb on - strand, within IAI47_00595 at 132.291 kb on - strand, within IAI47_00595 at 132.324 kb on + strand, within IAI47_00595 at 132.324 kb on + strand, within IAI47_00595 at 132.325 kb on - strand, within IAI47_00595 at 132.325 kb on - strand, within IAI47_00595 at 132.380 kb on + strand, within IAI47_00595 at 132.396 kb on - strand, within IAI47_00595 at 132.396 kb on - strand, within IAI47_00595 at 132.449 kb on + strand, within IAI47_00595 at 132.450 kb on - strand, within IAI47_00595 at 132.467 kb on + strand, within IAI47_00595 at 132.467 kb on + strand, within IAI47_00595 at 132.468 kb on - strand, within IAI47_00595 at 132.473 kb on + strand, within IAI47_00595 at 132.474 kb on - strand, within IAI47_00595 at 132.474 kb on - strand, within IAI47_00595 at 132.490 kb on + strand, within IAI47_00595 at 132.490 kb on + strand, within IAI47_00595 at 132.490 kb on + strand, within IAI47_00595 at 132.490 kb on + strand, within IAI47_00595 at 132.491 kb on - strand, within IAI47_00595 at 132.588 kb on - strand, within IAI47_00595 at 132.609 kb on - strand, within IAI47_00595 at 132.609 kb on - strand, within IAI47_00595 at 132.609 kb on - strand, within IAI47_00595 at 132.666 kb on + strand, within IAI47_00595 at 132.666 kb on + strand, within IAI47_00595 at 132.666 kb on + strand, within IAI47_00595 at 132.666 kb on + strand, within IAI47_00595 at 132.666 kb on + strand, within IAI47_00595 at 132.666 kb on + strand, within IAI47_00595 at 132.666 kb on + strand, within IAI47_00595 at 132.666 kb on + strand, within IAI47_00595 at 132.667 kb on - strand, within IAI47_00595 at 132.667 kb on - strand, within IAI47_00595 at 132.667 kb on - strand, within IAI47_00595 at 132.667 kb on - strand, within IAI47_00595 at 132.667 kb on - strand, within IAI47_00595 at 132.667 kb on - strand, within IAI47_00595 at 132.667 kb on - strand, within IAI47_00595 at 132.667 kb on - strand, within IAI47_00595 at 132.857 kb on + strand at 132.857 kb on + strand at 132.857 kb on + strand at 132.857 kb on + strand at 132.857 kb on + strand at 132.857 kb on + strand at 132.857 kb on + strand at 132.858 kb on - strand at 132.858 kb on - strand at 132.858 kb on - strand at 132.858 kb on - strand at 132.888 kb on - strand at 132.927 kb on + strand at 132.928 kb on - strand at 132.928 kb on - strand at 132.990 kb on + strand, within IAI47_00600 at 132.991 kb on - strand, within IAI47_00600 at 133.000 kb on + strand, within IAI47_00600 at 133.001 kb on - strand, within IAI47_00600 at 133.009 kb on - strand, within IAI47_00600 at 133.023 kb on + strand, within IAI47_00600 at 133.040 kb on + strand, within IAI47_00600 at 133.060 kb on + strand, within IAI47_00600 at 133.061 kb on - strand, within IAI47_00600 at 133.061 kb on - strand, within IAI47_00600 at 133.117 kb on + strand, within IAI47_00600 at 133.117 kb on + strand, within IAI47_00600 at 133.117 kb on + strand, within IAI47_00600 at 133.117 kb on + strand, within IAI47_00600 at 133.117 kb on + strand, within IAI47_00600 at 133.117 kb on + strand, within IAI47_00600 at 133.117 kb on + strand, within IAI47_00600 at 133.117 kb on + strand, within IAI47_00600 at 133.118 kb on - strand, within IAI47_00600 at 133.118 kb on - strand, within IAI47_00600 at 133.118 kb on - strand, within IAI47_00600 at 133.119 kb on + strand, within IAI47_00600 at 133.119 kb on + strand, within IAI47_00600 at 133.120 kb on - strand, within IAI47_00600 at 133.120 kb on - strand, within IAI47_00600 at 133.137 kb on + strand, within IAI47_00600 at 133.137 kb on + strand, within IAI47_00600 at 133.137 kb on + strand, within IAI47_00600 at 133.137 kb on + strand, within IAI47_00600 at 133.138 kb on - strand, within IAI47_00600 at 133.187 kb on - strand, within IAI47_00600 at 133.187 kb on - strand, within IAI47_00600 at 133.187 kb on - strand, within IAI47_00600 at 133.194 kb on + strand, within IAI47_00600 at 133.194 kb on + strand, within IAI47_00600 at 133.195 kb on - strand, within IAI47_00600 at 133.201 kb on - strand, within IAI47_00600 at 133.238 kb on + strand, within IAI47_00600 at 133.238 kb on + strand, within IAI47_00600 at 133.238 kb on + strand, within IAI47_00600 at 133.238 kb on + strand, within IAI47_00600 at 133.239 kb on - strand, within IAI47_00600 at 133.317 kb on + strand, within IAI47_00600 at 133.317 kb on + strand, within IAI47_00600 at 133.317 kb on + strand, within IAI47_00600 at 133.317 kb on + strand, within IAI47_00600 at 133.318 kb on - strand, within IAI47_00600 at 133.318 kb on - strand, within IAI47_00600 at 133.320 kb on + strand, within IAI47_00600 at 133.424 kb on - strand, within IAI47_00600 at 133.431 kb on + strand, within IAI47_00600 at 133.432 kb on - strand, within IAI47_00600 at 133.432 kb on - strand, within IAI47_00600 at 133.446 kb on + strand, within IAI47_00600 at 133.446 kb on + strand, within IAI47_00600 at 133.446 kb on + strand, within IAI47_00600 at 133.447 kb on - strand, within IAI47_00600 at 133.447 kb on - strand, within IAI47_00600 at 133.449 kb on + strand, within IAI47_00600 at 133.449 kb on + strand, within IAI47_00600 at 133.522 kb on + strand at 133.523 kb on - strand at 133.523 kb on - strand at 133.523 kb on - strand at 133.534 kb on + strand at 133.534 kb on + strand at 133.543 kb on + strand at 133.544 kb on - strand at 133.582 kb on + strand at 133.582 kb on + strand at 133.583 kb on - strand at 133.583 kb on - strand at 133.583 kb on - strand at 133.583 kb on - strand at 133.583 kb on - strand at 133.583 kb on - strand at 133.583 kb on - strand at 133.583 kb on - strand at 133.587 kb on + strand at 133.588 kb on - strand at 133.660 kb on + strand, within IAI47_00605 at 133.660 kb on + strand, within IAI47_00605 at 133.661 kb on - strand, within IAI47_00605 at 133.661 kb on - strand, within IAI47_00605 at 133.661 kb on - strand, within IAI47_00605 at 133.661 kb on - strand, within IAI47_00605 at 133.805 kb on + strand, within IAI47_00605 at 133.805 kb on + strand, within IAI47_00605 at 133.805 kb on + strand, within IAI47_00605 at 133.805 kb on + strand, within IAI47_00605 at 133.806 kb on - strand, within IAI47_00605 at 133.806 kb on - strand, within IAI47_00605 at 133.806 kb on - strand, within IAI47_00605 at 133.806 kb on - strand, within IAI47_00605 at 133.806 kb on - strand, within IAI47_00605 at 133.806 kb on - strand, within IAI47_00605 at 133.854 kb on + strand, within IAI47_00605 at 133.854 kb on + strand, within IAI47_00605 at 133.854 kb on + strand, within IAI47_00605 at 133.855 kb on - strand, within IAI47_00605 at 133.875 kb on - strand, within IAI47_00605 at 133.875 kb on - strand, within IAI47_00605 at 133.875 kb on - strand, within IAI47_00605 at 133.997 kb on + strand, within IAI47_00605 at 133.998 kb on - strand, within IAI47_00605 at 134.032 kb on + strand, within IAI47_00605 at 134.033 kb on - strand, within IAI47_00605 at 134.183 kb on + strand at 134.183 kb on + strand at 134.204 kb on + strand at 134.204 kb on + strand at 134.205 kb on - strand at 134.208 kb on + strand at 134.208 kb on + strand at 134.208 kb on + strand at 134.209 kb on - strand at 134.209 kb on - strand at 134.221 kb on + strand at 134.221 kb on + strand at 134.221 kb on + strand at 134.221 kb on + strand at 134.221 kb on + strand at 134.221 kb on + strand at 134.222 kb on - strand at 134.222 kb on - strand at 134.222 kb on - strand at 134.222 kb on - strand at 134.222 kb on - strand at 134.265 kb on + strand at 134.266 kb on - strand at 134.274 kb on + strand at 134.274 kb on + strand at 134.275 kb on - strand at 134.275 kb on - strand at 134.275 kb on - strand at 134.275 kb on - strand at 134.288 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 1 remove 131,912 + -2.3 131,912 + +0.7 131,987 + -1.9 131,987 + +1.1 131,987 + -0.1 131,987 + -0.3 131,987 + +0.1 131,987 + +0.1 131,987 + -1.0 131,987 + +0.1 131,987 + +0.7 131,987 + -0.9 131,987 + +0.3 131,987 + +1.5 131,987 + +0.2 131,987 + +1.0 131,987 + -0.5 131,987 + +0.9 131,987 + -0.2 131,988 - -2.4 131,988 - +0.3 131,988 - +0.4 131,988 - +0.1 131,988 - -0.0 131,988 - +0.9 131,988 - -1.0 131,988 - -0.5 132,023 + +0.1 132,024 - -0.0 132,098 + +1.1 132,098 + -1.3 132,098 + +0.3 132,099 - +0.3 132,099 - -0.9 132,099 - +1.0 132,099 - +2.9 132,099 - +0.1 132,100 + +0.2 132,100 + +0.9 132,101 - -0.7 132,101 - -0.2 132,118 + -0.4 132,118 + -0.7 132,118 + -0.2 132,118 + -1.1 132,119 - -0.3 132,119 - -0.5 132,134 - -0.9 132,134 - +0.2 132,134 - -1.0 132,134 - -0.1 132,195 + +0.1 132,196 - +0.9 132,196 - +0.2 132,196 - -0.1 132,266 - IAI47_00595 0.18 -0.3 132,266 - IAI47_00595 0.18 -0.1 132,291 - IAI47_00595 0.21 +1.0 132,324 + IAI47_00595 0.26 +0.5 132,324 + IAI47_00595 0.26 -0.1 132,325 - IAI47_00595 0.26 +0.5 132,325 - IAI47_00595 0.26 -1.0 132,380 + IAI47_00595 0.34 +0.5 132,396 - IAI47_00595 0.36 -2.0 132,396 - IAI47_00595 0.36 +0.0 132,449 + IAI47_00595 0.43 -1.7 132,450 - IAI47_00595 0.44 +0.3 132,467 + IAI47_00595 0.46 +1.5 132,467 + IAI47_00595 0.46 +0.3 132,468 - IAI47_00595 0.46 -0.3 132,473 + IAI47_00595 0.47 +0.6 132,474 - IAI47_00595 0.47 -0.3 132,474 - IAI47_00595 0.47 +0.3 132,490 + IAI47_00595 0.49 +0.2 132,490 + IAI47_00595 0.49 -0.5 132,490 + IAI47_00595 0.49 +0.9 132,490 + IAI47_00595 0.49 +0.4 132,491 - IAI47_00595 0.49 +0.9 132,588 - IAI47_00595 0.63 +0.9 132,609 - IAI47_00595 0.66 -1.1 132,609 - IAI47_00595 0.66 -1.7 132,609 - IAI47_00595 0.66 -0.7 132,666 + IAI47_00595 0.74 -0.5 132,666 + IAI47_00595 0.74 -0.7 132,666 + IAI47_00595 0.74 +0.6 132,666 + IAI47_00595 0.74 +0.5 132,666 + IAI47_00595 0.74 -0.4 132,666 + IAI47_00595 0.74 -0.1 132,666 + IAI47_00595 0.74 -0.1 132,666 + IAI47_00595 0.74 +0.8 132,667 - IAI47_00595 0.74 -0.6 132,667 - IAI47_00595 0.74 -1.1 132,667 - IAI47_00595 0.74 -0.1 132,667 - IAI47_00595 0.74 +1.1 132,667 - IAI47_00595 0.74 -0.1 132,667 - IAI47_00595 0.74 -0.3 132,667 - IAI47_00595 0.74 -0.5 132,667 - IAI47_00595 0.74 +0.3 132,857 + +0.1 132,857 + -0.1 132,857 + -0.9 132,857 + +0.1 132,857 + -1.9 132,857 + +0.3 132,857 + -0.5 132,858 - -0.0 132,858 - +0.9 132,858 - -0.6 132,858 - -0.1 132,888 - +0.7 132,927 + -1.8 132,928 - -0.6 132,928 - +1.9 132,990 + IAI47_00600 0.13 -1.1 132,991 - IAI47_00600 0.14 -0.6 133,000 + IAI47_00600 0.15 +1.0 133,001 - IAI47_00600 0.15 +0.4 133,009 - IAI47_00600 0.16 +0.4 133,023 + IAI47_00600 0.19 +0.2 133,040 + IAI47_00600 0.21 -0.8 133,060 + IAI47_00600 0.24 +0.2 133,061 - IAI47_00600 0.24 +1.6 133,061 - IAI47_00600 0.24 +1.6 133,117 + IAI47_00600 0.33 -0.1 133,117 + IAI47_00600 0.33 +0.2 133,117 + IAI47_00600 0.33 -0.5 133,117 + IAI47_00600 0.33 +0.9 133,117 + IAI47_00600 0.33 +0.6 133,117 + IAI47_00600 0.33 +1.1 133,117 + IAI47_00600 0.33 -0.3 133,117 + IAI47_00600 0.33 +0.4 133,118 - IAI47_00600 0.33 +1.2 133,118 - IAI47_00600 0.33 +0.5 133,118 - IAI47_00600 0.33 -1.0 133,119 + IAI47_00600 0.33 -0.1 133,119 + IAI47_00600 0.33 -1.1 133,120 - IAI47_00600 0.34 +0.9 133,120 - IAI47_00600 0.34 +1.3 133,137 + IAI47_00600 0.36 -0.3 133,137 + IAI47_00600 0.36 -0.3 133,137 + IAI47_00600 0.36 -0.6 133,137 + IAI47_00600 0.36 -0.4 133,138 - IAI47_00600 0.36 -0.7 133,187 - IAI47_00600 0.44 +0.1 133,187 - IAI47_00600 0.44 -0.6 133,187 - IAI47_00600 0.44 +0.3 133,194 + IAI47_00600 0.45 +0.4 133,194 + IAI47_00600 0.45 +0.9 133,195 - IAI47_00600 0.45 +1.7 133,201 - IAI47_00600 0.46 -0.3 133,238 + IAI47_00600 0.52 +1.3 133,238 + IAI47_00600 0.52 +0.3 133,238 + IAI47_00600 0.52 +0.9 133,238 + IAI47_00600 0.52 -0.1 133,239 - IAI47_00600 0.52 -0.6 133,317 + IAI47_00600 0.64 +0.8 133,317 + IAI47_00600 0.64 -0.8 133,317 + IAI47_00600 0.64 -0.7 133,317 + IAI47_00600 0.64 -0.4 133,318 - IAI47_00600 0.64 +0.6 133,318 - IAI47_00600 0.64 +0.4 133,320 + IAI47_00600 0.65 -1.3 133,424 - IAI47_00600 0.81 -0.5 133,431 + IAI47_00600 0.82 -0.8 133,432 - IAI47_00600 0.82 -1.0 133,432 - IAI47_00600 0.82 -1.9 133,446 + IAI47_00600 0.84 +0.3 133,446 + IAI47_00600 0.84 +0.5 133,446 + IAI47_00600 0.84 +0.9 133,447 - IAI47_00600 0.85 -0.7 133,447 - IAI47_00600 0.85 +0.5 133,449 + IAI47_00600 0.85 -1.9 133,449 + IAI47_00600 0.85 -1.0 133,522 + +0.6 133,523 - +0.4 133,523 - +0.8 133,523 - -0.7 133,534 + -1.4 133,534 + -1.1 133,543 + -0.7 133,544 - +1.2 133,582 + +0.2 133,582 + +0.2 133,583 - -0.1 133,583 - -0.1 133,583 - -0.2 133,583 - +0.5 133,583 - -1.0 133,583 - -0.1 133,583 - +0.6 133,583 - -0.1 133,587 + -0.3 133,588 - -0.6 133,660 + IAI47_00605 0.13 +1.4 133,660 + IAI47_00605 0.13 +0.9 133,661 - IAI47_00605 0.13 -0.7 133,661 - IAI47_00605 0.13 -0.5 133,661 - IAI47_00605 0.13 +1.9 133,661 - IAI47_00605 0.13 -1.6 133,805 + IAI47_00605 0.38 +0.6 133,805 + IAI47_00605 0.38 -0.7 133,805 + IAI47_00605 0.38 +0.6 133,805 + IAI47_00605 0.38 -0.1 133,806 - IAI47_00605 0.38 +0.9 133,806 - IAI47_00605 0.38 +0.5 133,806 - IAI47_00605 0.38 -1.3 133,806 - IAI47_00605 0.38 +0.2 133,806 - IAI47_00605 0.38 -0.6 133,806 - IAI47_00605 0.38 -2.1 133,854 + IAI47_00605 0.46 -1.1 133,854 + IAI47_00605 0.46 -0.4 133,854 + IAI47_00605 0.46 +0.3 133,855 - IAI47_00605 0.46 +0.1 133,875 - IAI47_00605 0.49 -0.1 133,875 - IAI47_00605 0.49 +0.3 133,875 - IAI47_00605 0.49 +1.4 133,997 + IAI47_00605 0.70 +1.1 133,998 - IAI47_00605 0.70 -0.1 134,032 + IAI47_00605 0.76 -0.5 134,033 - IAI47_00605 0.76 -0.9 134,183 + -0.0 134,183 + -0.0 134,204 + -1.5 134,204 + +0.4 134,205 - +0.2 134,208 + +0.9 134,208 + -0.7 134,208 + +0.4 134,209 - +0.1 134,209 - +1.6 134,221 + -0.5 134,221 + -0.4 134,221 + +1.2 134,221 + +0.6 134,221 + +2.0 134,221 + -0.7 134,222 - -0.7 134,222 - +1.9 134,222 - -0.9 134,222 - -0.1 134,222 - +1.5 134,265 + -0.1 134,266 - -0.1 134,274 + +0.3 134,274 + -0.8 134,275 - -0.3 134,275 - -0.1 134,275 - -0.1 134,275 - -1.0 134,288 + +0.1
Or see this region's nucleotide sequence