Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01475

Experiment: Inosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01473 and MPMX20_01474 are separated by 216 nucleotidesMPMX20_01474 and MPMX20_01475 are separated by 106 nucleotidesMPMX20_01475 and MPMX20_01476 are separated by 0 nucleotidesMPMX20_01476 and MPMX20_01477 are separated by 256 nucleotides MPMX20_01473: MPMX20_01473 - Ribosomal protein S12 methylthiotransferase RimO, at 1,544,044 to 1,545,369 _01473 MPMX20_01474: MPMX20_01474 - hypothetical protein, at 1,545,586 to 1,545,969 _01474 MPMX20_01475: MPMX20_01475 - Aldose sugar dehydrogenase YliI, at 1,546,076 to 1,547,194 _01475 MPMX20_01476: MPMX20_01476 - Glutathione S-transferase GstB, at 1,547,195 to 1,547,821 _01476 MPMX20_01477: MPMX20_01477 - D-alanyl-D-alanine carboxypeptidase DacC, at 1,548,078 to 1,549,283 _01477 Position (kb) 1546 1547 1548Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1545.181 kb on - strand, within MPMX20_01473at 1545.184 kb on + strand, within MPMX20_01473at 1545.184 kb on + strand, within MPMX20_01473at 1545.184 kb on + strand, within MPMX20_01473at 1545.192 kb on - strand, within MPMX20_01473at 1545.192 kb on - strand, within MPMX20_01473at 1545.192 kb on - strand, within MPMX20_01473at 1545.192 kb on - strand, within MPMX20_01473at 1545.192 kb on - strand, within MPMX20_01473at 1545.192 kb on - strand, within MPMX20_01473at 1545.192 kb on - strand, within MPMX20_01473at 1545.192 kb on - strand, within MPMX20_01473at 1545.207 kb on + strand, within MPMX20_01473at 1545.215 kb on - strand, within MPMX20_01473at 1545.215 kb on - strand, within MPMX20_01473at 1545.241 kb on + strandat 1545.292 kb on - strandat 1545.577 kb on + strandat 1545.679 kb on + strand, within MPMX20_01474at 1545.681 kb on + strand, within MPMX20_01474at 1545.688 kb on - strand, within MPMX20_01474at 1545.689 kb on - strand, within MPMX20_01474at 1545.796 kb on + strand, within MPMX20_01474at 1545.801 kb on + strand, within MPMX20_01474at 1545.824 kb on + strand, within MPMX20_01474at 1545.861 kb on - strand, within MPMX20_01474at 1545.961 kb on - strandat 1545.978 kb on - strandat 1545.990 kb on - strandat 1546.045 kb on - strandat 1546.051 kb on - strandat 1546.051 kb on - strandat 1546.067 kb on - strandat 1546.183 kb on + strandat 1546.222 kb on + strand, within MPMX20_01475at 1546.230 kb on + strand, within MPMX20_01475at 1546.230 kb on + strand, within MPMX20_01475at 1546.238 kb on - strand, within MPMX20_01475at 1546.238 kb on - strand, within MPMX20_01475at 1546.239 kb on - strand, within MPMX20_01475at 1546.239 kb on - strand, within MPMX20_01475at 1546.306 kb on - strand, within MPMX20_01475at 1546.306 kb on - strand, within MPMX20_01475at 1546.324 kb on - strand, within MPMX20_01475at 1546.394 kb on - strand, within MPMX20_01475at 1546.435 kb on - strand, within MPMX20_01475at 1546.499 kb on - strand, within MPMX20_01475at 1546.563 kb on + strand, within MPMX20_01475at 1546.615 kb on + strand, within MPMX20_01475at 1546.623 kb on - strand, within MPMX20_01475at 1546.749 kb on - strand, within MPMX20_01475at 1546.763 kb on - strand, within MPMX20_01475at 1546.769 kb on - strand, within MPMX20_01475at 1546.795 kb on + strand, within MPMX20_01475at 1546.860 kb on - strand, within MPMX20_01475at 1546.880 kb on + strand, within MPMX20_01475at 1546.894 kb on + strand, within MPMX20_01475at 1546.902 kb on - strand, within MPMX20_01475at 1546.965 kb on + strand, within MPMX20_01475at 1546.999 kb on + strand, within MPMX20_01475at 1547.055 kb on - strand, within MPMX20_01475at 1547.085 kb on + strandat 1547.093 kb on - strandat 1547.108 kb on + strandat 1547.290 kb on + strand, within MPMX20_01476at 1547.298 kb on - strand, within MPMX20_01476at 1547.298 kb on - strand, within MPMX20_01476at 1547.320 kb on - strand, within MPMX20_01476at 1547.350 kb on - strand, within MPMX20_01476at 1547.417 kb on + strand, within MPMX20_01476at 1547.417 kb on + strand, within MPMX20_01476at 1547.417 kb on + strand, within MPMX20_01476at 1547.417 kb on + strand, within MPMX20_01476at 1547.417 kb on + strand, within MPMX20_01476at 1547.417 kb on + strand, within MPMX20_01476at 1547.417 kb on + strand, within MPMX20_01476at 1547.425 kb on - strand, within MPMX20_01476at 1547.425 kb on - strand, within MPMX20_01476at 1547.425 kb on - strand, within MPMX20_01476at 1547.425 kb on - strand, within MPMX20_01476at 1547.425 kb on - strand, within MPMX20_01476at 1547.425 kb on - strand, within MPMX20_01476at 1547.425 kb on - strand, within MPMX20_01476at 1547.462 kb on - strand, within MPMX20_01476at 1547.502 kb on - strand, within MPMX20_01476at 1547.520 kb on - strand, within MPMX20_01476at 1547.538 kb on + strand, within MPMX20_01476at 1547.584 kb on - strand, within MPMX20_01476at 1547.598 kb on + strand, within MPMX20_01476at 1547.606 kb on - strand, within MPMX20_01476at 1547.621 kb on - strand, within MPMX20_01476at 1547.621 kb on - strand, within MPMX20_01476at 1547.629 kb on + strand, within MPMX20_01476at 1547.727 kb on + strand, within MPMX20_01476at 1547.727 kb on + strand, within MPMX20_01476at 1547.750 kb on + strand, within MPMX20_01476at 1547.939 kb on - strandat 1548.015 kb on - strandat 1548.022 kb on - strandat 1548.041 kb on - strandat 1548.068 kb on + strandat 1548.106 kb on + strandat 1548.106 kb on + strandat 1548.114 kb on - strandat 1548.114 kb on - strandat 1548.114 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine (N)
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1,545,181 - MPMX20_01473 0.86 -2.4
1,545,184 + MPMX20_01473 0.86 -0.7
1,545,184 + MPMX20_01473 0.86 +0.1
1,545,184 + MPMX20_01473 0.86 +0.7
1,545,192 - MPMX20_01473 0.87 -0.4
1,545,192 - MPMX20_01473 0.87 +0.1
1,545,192 - MPMX20_01473 0.87 +0.2
1,545,192 - MPMX20_01473 0.87 -1.3
1,545,192 - MPMX20_01473 0.87 -0.1
1,545,192 - MPMX20_01473 0.87 +1.8
1,545,192 - MPMX20_01473 0.87 -2.1
1,545,192 - MPMX20_01473 0.87 -3.5
1,545,207 + MPMX20_01473 0.88 -1.0
1,545,215 - MPMX20_01473 0.88 -1.7
1,545,215 - MPMX20_01473 0.88 +1.3
1,545,241 + +0.6
1,545,292 - -1.0
1,545,577 + -2.0
1,545,679 + MPMX20_01474 0.24 +2.5
1,545,681 + MPMX20_01474 0.25 +1.7
1,545,688 - MPMX20_01474 0.27 -2.3
1,545,689 - MPMX20_01474 0.27 +0.3
1,545,796 + MPMX20_01474 0.55 +1.7
1,545,801 + MPMX20_01474 0.56 -0.4
1,545,824 + MPMX20_01474 0.62 +0.3
1,545,861 - MPMX20_01474 0.72 -1.3
1,545,961 - -3.0
1,545,978 - +0.9
1,545,990 - -2.2
1,546,045 - +3.3
1,546,051 - -2.2
1,546,051 - +1.0
1,546,067 - +0.7
1,546,183 + -0.2
1,546,222 + MPMX20_01475 0.13 -0.5
1,546,230 + MPMX20_01475 0.14 -2.5
1,546,230 + MPMX20_01475 0.14 -0.9
1,546,238 - MPMX20_01475 0.14 +0.3
1,546,238 - MPMX20_01475 0.14 -0.4
1,546,239 - MPMX20_01475 0.15 +0.8
1,546,239 - MPMX20_01475 0.15 +1.1
1,546,306 - MPMX20_01475 0.21 -2.2
1,546,306 - MPMX20_01475 0.21 +0.0
1,546,324 - MPMX20_01475 0.22 -2.3
1,546,394 - MPMX20_01475 0.28 -2.0
1,546,435 - MPMX20_01475 0.32 +0.5
1,546,499 - MPMX20_01475 0.38 +0.2
1,546,563 + MPMX20_01475 0.44 -1.1
1,546,615 + MPMX20_01475 0.48 -2.5
1,546,623 - MPMX20_01475 0.49 +1.4
1,546,749 - MPMX20_01475 0.60 -2.2
1,546,763 - MPMX20_01475 0.61 -0.2
1,546,769 - MPMX20_01475 0.62 -2.7
1,546,795 + MPMX20_01475 0.64 +0.2
1,546,860 - MPMX20_01475 0.70 +0.6
1,546,880 + MPMX20_01475 0.72 -0.0
1,546,894 + MPMX20_01475 0.73 -1.9
1,546,902 - MPMX20_01475 0.74 -3.0
1,546,965 + MPMX20_01475 0.79 +1.2
1,546,999 + MPMX20_01475 0.82 -0.3
1,547,055 - MPMX20_01475 0.87 +0.5
1,547,085 + +0.5
1,547,093 - +0.7
1,547,108 + -3.8
1,547,290 + MPMX20_01476 0.15 -1.5
1,547,298 - MPMX20_01476 0.16 +0.1
1,547,298 - MPMX20_01476 0.16 +0.4
1,547,320 - MPMX20_01476 0.20 -2.0
1,547,350 - MPMX20_01476 0.25 +0.6
1,547,417 + MPMX20_01476 0.35 -0.3
1,547,417 + MPMX20_01476 0.35 +0.4
1,547,417 + MPMX20_01476 0.35 -0.8
1,547,417 + MPMX20_01476 0.35 +0.2
1,547,417 + MPMX20_01476 0.35 -1.6
1,547,417 + MPMX20_01476 0.35 +0.7
1,547,417 + MPMX20_01476 0.35 -0.1
1,547,425 - MPMX20_01476 0.37 +0.8
1,547,425 - MPMX20_01476 0.37 -1.7
1,547,425 - MPMX20_01476 0.37 -0.4
1,547,425 - MPMX20_01476 0.37 +0.6
1,547,425 - MPMX20_01476 0.37 +0.4
1,547,425 - MPMX20_01476 0.37 -1.8
1,547,425 - MPMX20_01476 0.37 -0.0
1,547,462 - MPMX20_01476 0.43 -0.7
1,547,502 - MPMX20_01476 0.49 +0.3
1,547,520 - MPMX20_01476 0.52 -3.1
1,547,538 + MPMX20_01476 0.55 +0.3
1,547,584 - MPMX20_01476 0.62 +0.3
1,547,598 + MPMX20_01476 0.64 +0.3
1,547,606 - MPMX20_01476 0.66 -1.1
1,547,621 - MPMX20_01476 0.68 +1.0
1,547,621 - MPMX20_01476 0.68 -0.5
1,547,629 + MPMX20_01476 0.69 +1.1
1,547,727 + MPMX20_01476 0.85 -3.3
1,547,727 + MPMX20_01476 0.85 -1.4
1,547,750 + MPMX20_01476 0.89 -0.1
1,547,939 - -2.8
1,548,015 - -0.3
1,548,022 - +0.3
1,548,041 - +2.9
1,548,068 + -3.2
1,548,106 + -1.1
1,548,106 + +1.2
1,548,114 - +0.1
1,548,114 - -2.3
1,548,114 - -2.3

Or see this region's nucleotide sequence