Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01094

Experiment: Inosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01092 and MPMX20_01093 are separated by 24 nucleotidesMPMX20_01093 and MPMX20_01094 overlap by 4 nucleotidesMPMX20_01094 and MPMX20_01095 are separated by 182 nucleotides MPMX20_01092: MPMX20_01092 - Thioesterase 1/protease 1/lysophospholipase L1, at 1,151,464 to 1,152,033 _01092 MPMX20_01093: MPMX20_01093 - Lipoprotein-releasing system ATP-binding protein LolD, at 1,152,058 to 1,152,744 _01093 MPMX20_01094: MPMX20_01094 - hypothetical protein, at 1,152,741 to 1,155,155 _01094 MPMX20_01095: MPMX20_01095 - hypothetical protein, at 1,155,338 to 1,156,483 _01095 Position (kb) 1152 1153 1154 1155 1156Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1151.745 kb on + strand, within MPMX20_01092at 1151.752 kb on + strand, within MPMX20_01092at 1151.760 kb on - strand, within MPMX20_01092at 1151.760 kb on - strand, within MPMX20_01092at 1151.780 kb on - strand, within MPMX20_01092at 1151.834 kb on + strand, within MPMX20_01092at 1151.863 kb on + strand, within MPMX20_01092at 1151.871 kb on - strand, within MPMX20_01092at 1151.909 kb on + strand, within MPMX20_01092at 1151.917 kb on - strand, within MPMX20_01092at 1151.937 kb on + strand, within MPMX20_01092at 1151.937 kb on + strand, within MPMX20_01092at 1151.937 kb on + strand, within MPMX20_01092at 1151.937 kb on + strand, within MPMX20_01092at 1151.940 kb on - strand, within MPMX20_01092at 1151.950 kb on - strand, within MPMX20_01092at 1151.950 kb on - strand, within MPMX20_01092at 1151.997 kb on + strandat 1151.997 kb on + strandat 1152.106 kb on + strandat 1152.120 kb on - strandat 1152.141 kb on + strand, within MPMX20_01093at 1152.189 kb on + strand, within MPMX20_01093at 1152.253 kb on - strand, within MPMX20_01093at 1152.253 kb on - strand, within MPMX20_01093at 1152.294 kb on + strand, within MPMX20_01093at 1152.405 kb on - strand, within MPMX20_01093at 1152.426 kb on - strand, within MPMX20_01093at 1152.441 kb on + strand, within MPMX20_01093at 1152.456 kb on + strand, within MPMX20_01093at 1152.456 kb on + strand, within MPMX20_01093at 1152.498 kb on + strand, within MPMX20_01093at 1152.516 kb on - strand, within MPMX20_01093at 1152.516 kb on - strand, within MPMX20_01093at 1152.523 kb on + strand, within MPMX20_01093at 1152.523 kb on + strand, within MPMX20_01093at 1152.523 kb on + strand, within MPMX20_01093at 1152.523 kb on + strand, within MPMX20_01093at 1152.523 kb on + strand, within MPMX20_01093at 1152.525 kb on - strand, within MPMX20_01093at 1152.531 kb on - strand, within MPMX20_01093at 1152.531 kb on - strand, within MPMX20_01093at 1152.531 kb on - strand, within MPMX20_01093at 1152.531 kb on - strand, within MPMX20_01093at 1152.553 kb on + strand, within MPMX20_01093at 1152.561 kb on - strand, within MPMX20_01093at 1152.643 kb on - strand, within MPMX20_01093at 1152.643 kb on - strand, within MPMX20_01093at 1152.655 kb on - strand, within MPMX20_01093at 1152.735 kb on - strandat 1152.783 kb on - strandat 1152.844 kb on - strandat 1152.849 kb on - strandat 1152.872 kb on - strandat 1152.873 kb on - strandat 1152.997 kb on + strand, within MPMX20_01094at 1153.069 kb on - strand, within MPMX20_01094at 1153.074 kb on + strand, within MPMX20_01094at 1153.074 kb on + strand, within MPMX20_01094at 1153.132 kb on + strand, within MPMX20_01094at 1153.186 kb on - strand, within MPMX20_01094at 1153.239 kb on - strand, within MPMX20_01094at 1153.241 kb on + strand, within MPMX20_01094at 1153.355 kb on + strand, within MPMX20_01094at 1153.396 kb on - strand, within MPMX20_01094at 1153.414 kb on + strand, within MPMX20_01094at 1153.422 kb on - strand, within MPMX20_01094at 1153.432 kb on - strand, within MPMX20_01094at 1153.485 kb on + strand, within MPMX20_01094at 1153.485 kb on - strand, within MPMX20_01094at 1153.493 kb on - strand, within MPMX20_01094at 1153.494 kb on - strand, within MPMX20_01094at 1153.576 kb on - strand, within MPMX20_01094at 1153.650 kb on - strand, within MPMX20_01094at 1153.650 kb on - strand, within MPMX20_01094at 1153.705 kb on + strand, within MPMX20_01094at 1153.705 kb on + strand, within MPMX20_01094at 1153.723 kb on + strand, within MPMX20_01094at 1153.752 kb on - strand, within MPMX20_01094at 1153.790 kb on + strand, within MPMX20_01094at 1153.795 kb on + strand, within MPMX20_01094at 1153.854 kb on - strand, within MPMX20_01094at 1153.873 kb on - strand, within MPMX20_01094at 1153.949 kb on + strand, within MPMX20_01094at 1153.949 kb on + strand, within MPMX20_01094at 1153.949 kb on + strand, within MPMX20_01094at 1153.949 kb on + strand, within MPMX20_01094at 1153.957 kb on - strand, within MPMX20_01094at 1153.957 kb on - strand, within MPMX20_01094at 1153.957 kb on - strand, within MPMX20_01094at 1153.990 kb on + strand, within MPMX20_01094at 1153.996 kb on - strand, within MPMX20_01094at 1153.996 kb on - strand, within MPMX20_01094at 1153.996 kb on - strand, within MPMX20_01094at 1154.015 kb on + strand, within MPMX20_01094at 1154.022 kb on - strand, within MPMX20_01094at 1154.022 kb on - strand, within MPMX20_01094at 1154.092 kb on + strand, within MPMX20_01094at 1154.092 kb on + strand, within MPMX20_01094at 1154.092 kb on + strand, within MPMX20_01094at 1154.092 kb on + strand, within MPMX20_01094at 1154.092 kb on + strand, within MPMX20_01094at 1154.095 kb on - strand, within MPMX20_01094at 1154.095 kb on - strand, within MPMX20_01094at 1154.095 kb on - strand, within MPMX20_01094at 1154.095 kb on - strand, within MPMX20_01094at 1154.100 kb on - strand, within MPMX20_01094at 1154.100 kb on - strand, within MPMX20_01094at 1154.233 kb on + strand, within MPMX20_01094at 1154.241 kb on - strand, within MPMX20_01094at 1154.294 kb on + strand, within MPMX20_01094at 1154.307 kb on + strand, within MPMX20_01094at 1154.339 kb on + strand, within MPMX20_01094at 1154.346 kb on - strand, within MPMX20_01094at 1154.550 kb on - strand, within MPMX20_01094at 1154.569 kb on - strand, within MPMX20_01094at 1154.575 kb on + strand, within MPMX20_01094at 1154.687 kb on - strand, within MPMX20_01094at 1154.737 kb on + strand, within MPMX20_01094at 1154.745 kb on - strand, within MPMX20_01094at 1154.768 kb on + strand, within MPMX20_01094at 1154.768 kb on + strand, within MPMX20_01094at 1154.786 kb on + strand, within MPMX20_01094at 1154.807 kb on + strand, within MPMX20_01094at 1154.887 kb on + strand, within MPMX20_01094at 1154.909 kb on + strand, within MPMX20_01094at 1154.924 kb on + strandat 1154.950 kb on - strandat 1154.995 kb on - strandat 1154.996 kb on - strandat 1155.008 kb on - strandat 1155.067 kb on + strandat 1155.070 kb on - strandat 1155.144 kb on - strandat 1155.308 kb on + strandat 1155.383 kb on - strandat 1155.386 kb on + strandat 1155.386 kb on + strandat 1155.394 kb on - strandat 1155.394 kb on - strandat 1155.462 kb on + strand, within MPMX20_01095at 1155.476 kb on - strand, within MPMX20_01095at 1155.524 kb on + strand, within MPMX20_01095at 1155.629 kb on - strand, within MPMX20_01095at 1155.629 kb on - strand, within MPMX20_01095at 1155.648 kb on - strand, within MPMX20_01095at 1155.650 kb on - strand, within MPMX20_01095at 1155.650 kb on - strand, within MPMX20_01095at 1155.678 kb on - strand, within MPMX20_01095at 1155.706 kb on + strand, within MPMX20_01095at 1155.706 kb on + strand, within MPMX20_01095at 1155.707 kb on - strand, within MPMX20_01095at 1155.714 kb on - strand, within MPMX20_01095at 1155.714 kb on - strand, within MPMX20_01095at 1155.714 kb on - strand, within MPMX20_01095at 1155.724 kb on - strand, within MPMX20_01095at 1155.738 kb on - strand, within MPMX20_01095at 1155.738 kb on - strand, within MPMX20_01095at 1155.743 kb on - strand, within MPMX20_01095at 1155.744 kb on - strand, within MPMX20_01095at 1155.755 kb on + strand, within MPMX20_01095at 1155.760 kb on + strand, within MPMX20_01095at 1155.768 kb on - strand, within MPMX20_01095at 1155.784 kb on - strand, within MPMX20_01095at 1155.827 kb on + strand, within MPMX20_01095at 1155.834 kb on - strand, within MPMX20_01095at 1155.834 kb on - strand, within MPMX20_01095at 1155.834 kb on - strand, within MPMX20_01095at 1155.841 kb on + strand, within MPMX20_01095at 1155.851 kb on + strand, within MPMX20_01095at 1155.953 kb on - strand, within MPMX20_01095at 1156.015 kb on + strand, within MPMX20_01095at 1156.030 kb on + strand, within MPMX20_01095at 1156.048 kb on + strand, within MPMX20_01095at 1156.051 kb on - strand, within MPMX20_01095at 1156.057 kb on - strand, within MPMX20_01095at 1156.137 kb on - strand, within MPMX20_01095at 1156.137 kb on - strand, within MPMX20_01095at 1156.137 kb on - strand, within MPMX20_01095at 1156.144 kb on + strand, within MPMX20_01095

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine (N)
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1,151,745 + MPMX20_01092 0.49 -3.2
1,151,752 + MPMX20_01092 0.51 -1.0
1,151,760 - MPMX20_01092 0.52 -2.6
1,151,760 - MPMX20_01092 0.52 +0.6
1,151,780 - MPMX20_01092 0.55 -2.2
1,151,834 + MPMX20_01092 0.65 -1.2
1,151,863 + MPMX20_01092 0.70 -0.5
1,151,871 - MPMX20_01092 0.71 -1.8
1,151,909 + MPMX20_01092 0.78 -3.2
1,151,917 - MPMX20_01092 0.79 -0.1
1,151,937 + MPMX20_01092 0.83 -0.8
1,151,937 + MPMX20_01092 0.83 +0.9
1,151,937 + MPMX20_01092 0.83 +1.2
1,151,937 + MPMX20_01092 0.83 +0.0
1,151,940 - MPMX20_01092 0.84 -0.4
1,151,950 - MPMX20_01092 0.85 -1.1
1,151,950 - MPMX20_01092 0.85 +1.0
1,151,997 + -1.9
1,151,997 + -2.4
1,152,106 + -1.0
1,152,120 - +0.5
1,152,141 + MPMX20_01093 0.12 -0.8
1,152,189 + MPMX20_01093 0.19 -2.4
1,152,253 - MPMX20_01093 0.28 +0.8
1,152,253 - MPMX20_01093 0.28 -2.4
1,152,294 + MPMX20_01093 0.34 +0.5
1,152,405 - MPMX20_01093 0.51 +1.1
1,152,426 - MPMX20_01093 0.54 -0.1
1,152,441 + MPMX20_01093 0.56 +0.3
1,152,456 + MPMX20_01093 0.58 -0.0
1,152,456 + MPMX20_01093 0.58 -0.4
1,152,498 + MPMX20_01093 0.64 -1.9
1,152,516 - MPMX20_01093 0.67 -1.2
1,152,516 - MPMX20_01093 0.67 -1.2
1,152,523 + MPMX20_01093 0.68 -2.9
1,152,523 + MPMX20_01093 0.68 -1.9
1,152,523 + MPMX20_01093 0.68 +1.0
1,152,523 + MPMX20_01093 0.68 -0.3
1,152,523 + MPMX20_01093 0.68 -0.7
1,152,525 - MPMX20_01093 0.68 -0.7
1,152,531 - MPMX20_01093 0.69 +0.6
1,152,531 - MPMX20_01093 0.69 +0.5
1,152,531 - MPMX20_01093 0.69 -0.6
1,152,531 - MPMX20_01093 0.69 +1.0
1,152,553 + MPMX20_01093 0.72 +0.8
1,152,561 - MPMX20_01093 0.73 -1.4
1,152,643 - MPMX20_01093 0.85 +0.9
1,152,643 - MPMX20_01093 0.85 -0.4
1,152,655 - MPMX20_01093 0.87 -1.1
1,152,735 - -0.3
1,152,783 - -0.3
1,152,844 - -0.6
1,152,849 - -1.2
1,152,872 - +1.5
1,152,873 - -0.8
1,152,997 + MPMX20_01094 0.11 -0.1
1,153,069 - MPMX20_01094 0.14 +0.6
1,153,074 + MPMX20_01094 0.14 -0.2
1,153,074 + MPMX20_01094 0.14 -1.6
1,153,132 + MPMX20_01094 0.16 -0.0
1,153,186 - MPMX20_01094 0.18 -0.9
1,153,239 - MPMX20_01094 0.21 -4.0
1,153,241 + MPMX20_01094 0.21 -0.1
1,153,355 + MPMX20_01094 0.25 +0.8
1,153,396 - MPMX20_01094 0.27 -0.4
1,153,414 + MPMX20_01094 0.28 +0.8
1,153,422 - MPMX20_01094 0.28 +0.1
1,153,432 - MPMX20_01094 0.29 -1.5
1,153,485 + MPMX20_01094 0.31 -3.1
1,153,485 - MPMX20_01094 0.31 -0.3
1,153,493 - MPMX20_01094 0.31 -1.0
1,153,494 - MPMX20_01094 0.31 -1.0
1,153,576 - MPMX20_01094 0.35 -1.2
1,153,650 - MPMX20_01094 0.38 -2.1
1,153,650 - MPMX20_01094 0.38 +0.7
1,153,705 + MPMX20_01094 0.40 -0.4
1,153,705 + MPMX20_01094 0.40 +1.2
1,153,723 + MPMX20_01094 0.41 +0.2
1,153,752 - MPMX20_01094 0.42 -0.7
1,153,790 + MPMX20_01094 0.43 -0.5
1,153,795 + MPMX20_01094 0.44 -0.4
1,153,854 - MPMX20_01094 0.46 +0.5
1,153,873 - MPMX20_01094 0.47 +0.8
1,153,949 + MPMX20_01094 0.50 -0.7
1,153,949 + MPMX20_01094 0.50 -3.2
1,153,949 + MPMX20_01094 0.50 -0.2
1,153,949 + MPMX20_01094 0.50 -2.6
1,153,957 - MPMX20_01094 0.50 -0.0
1,153,957 - MPMX20_01094 0.50 +1.6
1,153,957 - MPMX20_01094 0.50 +0.4
1,153,990 + MPMX20_01094 0.52 +1.4
1,153,996 - MPMX20_01094 0.52 -0.2
1,153,996 - MPMX20_01094 0.52 -1.6
1,153,996 - MPMX20_01094 0.52 +1.4
1,154,015 + MPMX20_01094 0.53 -1.3
1,154,022 - MPMX20_01094 0.53 -0.1
1,154,022 - MPMX20_01094 0.53 +3.2
1,154,092 + MPMX20_01094 0.56 -1.5
1,154,092 + MPMX20_01094 0.56 +2.2
1,154,092 + MPMX20_01094 0.56 -1.0
1,154,092 + MPMX20_01094 0.56 -0.6
1,154,092 + MPMX20_01094 0.56 +0.7
1,154,095 - MPMX20_01094 0.56 +1.0
1,154,095 - MPMX20_01094 0.56 -3.3
1,154,095 - MPMX20_01094 0.56 -1.3
1,154,095 - MPMX20_01094 0.56 -2.8
1,154,100 - MPMX20_01094 0.56 -0.5
1,154,100 - MPMX20_01094 0.56 -1.6
1,154,233 + MPMX20_01094 0.62 -2.4
1,154,241 - MPMX20_01094 0.62 -2.0
1,154,294 + MPMX20_01094 0.64 -4.2
1,154,307 + MPMX20_01094 0.65 +1.1
1,154,339 + MPMX20_01094 0.66 -0.2
1,154,346 - MPMX20_01094 0.66 +0.1
1,154,550 - MPMX20_01094 0.75 +2.2
1,154,569 - MPMX20_01094 0.76 -0.4
1,154,575 + MPMX20_01094 0.76 -1.6
1,154,687 - MPMX20_01094 0.81 -0.7
1,154,737 + MPMX20_01094 0.83 -3.3
1,154,745 - MPMX20_01094 0.83 -1.0
1,154,768 + MPMX20_01094 0.84 -1.8
1,154,768 + MPMX20_01094 0.84 -1.8
1,154,786 + MPMX20_01094 0.85 -2.4
1,154,807 + MPMX20_01094 0.86 -1.3
1,154,887 + MPMX20_01094 0.89 -0.6
1,154,909 + MPMX20_01094 0.90 +1.2
1,154,924 + -0.8
1,154,950 - -2.1
1,154,995 - -2.9
1,154,996 - +1.4
1,155,008 - -1.0
1,155,067 + +0.6
1,155,070 - +0.6
1,155,144 - -1.0
1,155,308 + +0.5
1,155,383 - -0.4
1,155,386 + -1.7
1,155,386 + +1.2
1,155,394 - +0.6
1,155,394 - +1.0
1,155,462 + MPMX20_01095 0.11 +1.7
1,155,476 - MPMX20_01095 0.12 -0.4
1,155,524 + MPMX20_01095 0.16 -0.4
1,155,629 - MPMX20_01095 0.25 +3.4
1,155,629 - MPMX20_01095 0.25 +0.0
1,155,648 - MPMX20_01095 0.27 +0.3
1,155,650 - MPMX20_01095 0.27 +2.3
1,155,650 - MPMX20_01095 0.27 -1.5
1,155,678 - MPMX20_01095 0.30 -0.5
1,155,706 + MPMX20_01095 0.32 -1.0
1,155,706 + MPMX20_01095 0.32 -0.7
1,155,707 - MPMX20_01095 0.32 -1.1
1,155,714 - MPMX20_01095 0.33 -0.4
1,155,714 - MPMX20_01095 0.33 +0.7
1,155,714 - MPMX20_01095 0.33 +0.2
1,155,724 - MPMX20_01095 0.34 +0.8
1,155,738 - MPMX20_01095 0.35 -1.0
1,155,738 - MPMX20_01095 0.35 -0.6
1,155,743 - MPMX20_01095 0.35 +0.6
1,155,744 - MPMX20_01095 0.35 +2.1
1,155,755 + MPMX20_01095 0.36 +1.1
1,155,760 + MPMX20_01095 0.37 -2.2
1,155,768 - MPMX20_01095 0.38 +0.6
1,155,784 - MPMX20_01095 0.39 -1.7
1,155,827 + MPMX20_01095 0.43 -0.0
1,155,834 - MPMX20_01095 0.43 -0.8
1,155,834 - MPMX20_01095 0.43 +1.3
1,155,834 - MPMX20_01095 0.43 -4.1
1,155,841 + MPMX20_01095 0.44 +0.3
1,155,851 + MPMX20_01095 0.45 -2.2
1,155,953 - MPMX20_01095 0.54 -2.0
1,156,015 + MPMX20_01095 0.59 +0.7
1,156,030 + MPMX20_01095 0.60 -0.1
1,156,048 + MPMX20_01095 0.62 -2.0
1,156,051 - MPMX20_01095 0.62 +3.4
1,156,057 - MPMX20_01095 0.63 -0.7
1,156,137 - MPMX20_01095 0.70 +1.6
1,156,137 - MPMX20_01095 0.70 -0.0
1,156,137 - MPMX20_01095 0.70 +1.0
1,156,144 + MPMX20_01095 0.70 +0.2

Or see this region's nucleotide sequence