Strain Fitness in Pantoea sp. MT58 around IAI47_18790

Experiment: Ying_all64 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 1
4,006,822	-				+0.1
4,006,822	-				+0.4
4,006,824	-				-1.6
4,006,824	-				-1.3
4,006,824	-				-1.6
4,006,851	+				-0.5
4,006,902	+				+0.1
4,006,902	+				+0.9
4,006,903	-				+0.8
4,006,903	-				+0.4
4,006,903	-				+0.4
4,007,009	+				-0.4
4,007,016	+				-0.0
4,007,017	-				-0.2
4,007,017	-				+0.1
4,007,026	-				+0.3
4,007,075	+				-0.2
4,007,075	+				-0.1
4,007,075	+				-0.1
4,007,075	+				-0.2
4,007,075	+				+0.0
4,007,075	+				+1.0
4,007,075	+				+0.5
4,007,075	+				-0.9
4,007,076	-				-0.2
4,007,076	-				-0.0
4,007,076	-				-0.3
4,007,076	-				+0.4
4,007,076	-				+1.1
4,007,076	-				+0.8
4,007,076	-				+0.5
4,007,076	-				-0.5
4,007,076	-				-1.0
4,007,076	-				-1.0
4,007,076	-				-0.2
4,007,077	+				+0.4
4,007,077	+				+0.4
4,007,077	+				-0.1
4,007,078	-				+0.7
4,007,078	-				-1.1
4,007,078	-				-0.1
4,007,078	-				-0.5
4,007,078	-				-0.5
4,007,078	-				+1.5
4,007,167	+		IAI47_18795	0.17	+0.8
4,007,167	+		IAI47_18795	0.17	-0.2
4,007,168	-		IAI47_18795	0.17	-0.1
4,007,168	-		IAI47_18795	0.17	+0.4
4,007,168	-		IAI47_18795	0.17	-2.6
4,007,181	-		IAI47_18795	0.19	+0.8
4,007,249	+		IAI47_18795	0.26	+0.4
4,007,250	-		IAI47_18795	0.26	-1.6
4,007,250	-		IAI47_18795	0.26	+0.4
4,007,250	-		IAI47_18795	0.26	+2.4
4,007,250	-		IAI47_18795	0.26	+0.4
4,007,270	+		IAI47_18795	0.28	-0.5
4,007,270	+		IAI47_18795	0.28	+0.1
4,007,270	+		IAI47_18795	0.28	+0.2
4,007,270	+		IAI47_18795	0.28	-0.9
4,007,270	+		IAI47_18795	0.28	-0.2
4,007,270	+		IAI47_18795	0.28	+0.1
4,007,271	-		IAI47_18795	0.28	+0.4
4,007,271	-		IAI47_18795	0.28	-0.0
4,007,271	-		IAI47_18795	0.28	-0.4
4,007,271	-		IAI47_18795	0.28	+1.0
4,007,271	-		IAI47_18795	0.28	-0.2
4,007,271	-		IAI47_18795	0.28	-0.4
4,007,271	-		IAI47_18795	0.28	+0.2
4,007,271	-		IAI47_18795	0.28	+0.5
4,007,271	-		IAI47_18795	0.28	+0.4
4,007,271	-		IAI47_18795	0.28	-0.5
4,007,271	-		IAI47_18795	0.28	-0.1
4,007,272	+		IAI47_18795	0.28	-0.4
4,007,272	+		IAI47_18795	0.28	+0.2
4,007,272	+		IAI47_18795	0.28	+0.2
4,007,272	+		IAI47_18795	0.28	-0.9
4,007,272	+		IAI47_18795	0.28	+0.8
4,007,272	+		IAI47_18795	0.28	+0.5
4,007,273	-		IAI47_18795	0.28	+0.6
4,007,273	-		IAI47_18795	0.28	+0.8
4,007,273	-		IAI47_18795	0.28	-1.4
4,007,273	-		IAI47_18795	0.28	-0.6
4,007,274	-		IAI47_18795	0.28	-0.7
4,007,339	+		IAI47_18795	0.35	-2.0
4,007,339	+		IAI47_18795	0.35	+1.4
4,007,339	+		IAI47_18795	0.35	-0.1
4,007,339	+		IAI47_18795	0.35	+1.5
4,007,340	-		IAI47_18795	0.35	+0.2
4,007,340	-		IAI47_18795	0.35	-1.3
4,007,340	-		IAI47_18795	0.35	-0.5
4,007,340	-		IAI47_18795	0.35	-0.1
4,007,340	-		IAI47_18795	0.35	-0.8
4,007,340	-		IAI47_18795	0.35	+0.4
4,007,365	-		IAI47_18795	0.37	+0.6
4,007,375	+		IAI47_18795	0.38	+0.6
4,007,375	+		IAI47_18795	0.38	+0.5
4,007,375	+		IAI47_18795	0.38	-0.6
4,007,375	+		IAI47_18795	0.38	-0.2
4,007,375	+		IAI47_18795	0.38	-1.9
4,007,375	+		IAI47_18795	0.38	-0.2
4,007,375	+		IAI47_18795	0.38	+0.6
4,007,376	-		IAI47_18795	0.38	-1.0
4,007,376	-		IAI47_18795	0.38	-1.0
4,007,376	-		IAI47_18795	0.38	-0.8
4,007,420	+		IAI47_18795	0.43	-0.6
4,007,421	-		IAI47_18795	0.43	+1.5
4,007,421	-		IAI47_18795	0.43	+1.8
4,007,421	-		IAI47_18795	0.43	-0.1
4,007,421	-		IAI47_18795	0.43	-0.8
4,007,467	+		IAI47_18795	0.47	+0.3
4,007,468	-		IAI47_18795	0.48	+0.8
4,007,468	-		IAI47_18795	0.48	+0.3
4,007,516	+		IAI47_18795	0.52	-0.4
4,007,516	+		IAI47_18795	0.52	-0.1
4,007,516	+		IAI47_18795	0.52	+0.4
4,007,516	+		IAI47_18795	0.52	+1.3
4,007,516	+		IAI47_18795	0.52	+0.8
4,007,517	-		IAI47_18795	0.53	-0.7
4,007,517	-		IAI47_18795	0.53	+0.5
4,007,517	-		IAI47_18795	0.53	+0.7
4,007,517	-		IAI47_18795	0.53	+0.3
4,007,537	+		IAI47_18795	0.55	-0.7
4,007,537	+		IAI47_18795	0.55	+0.1
4,007,537	+		IAI47_18795	0.55	+1.1
4,007,537	+		IAI47_18795	0.55	-2.2
4,007,537	+		IAI47_18795	0.55	+0.6
4,007,538	-		IAI47_18795	0.55	-0.1
4,007,538	-		IAI47_18795	0.55	+0.1
4,007,538	-		IAI47_18795	0.55	+1.1
4,007,538	-		IAI47_18795	0.55	-0.6
4,007,538	-		IAI47_18795	0.55	-0.1
4,007,540	+		IAI47_18795	0.55	-1.0
4,007,540	+		IAI47_18795	0.55	-0.2
4,007,541	-		IAI47_18795	0.55	-0.0
4,007,541	-		IAI47_18795	0.55	-1.9
4,007,541	-		IAI47_18795	0.55	-0.2
4,007,549	+		IAI47_18795	0.56	-1.6
4,007,549	+		IAI47_18795	0.56	+0.4
4,007,549	+		IAI47_18795	0.56	+1.4
4,007,549	+		IAI47_18795	0.56	-0.6
4,007,549	+		IAI47_18795	0.56	-0.1
4,007,549	+		IAI47_18795	0.56	-0.1
4,007,550	-		IAI47_18795	0.56	-1.2
4,007,550	-		IAI47_18795	0.56	+0.2
4,007,550	-		IAI47_18795	0.56	+0.3
4,007,550	-		IAI47_18795	0.56	+0.4
4,007,550	-		IAI47_18795	0.56	+0.8
4,007,550	-		IAI47_18795	0.56	+0.6
4,007,550	-		IAI47_18795	0.56	-0.5
4,007,550	-		IAI47_18795	0.56	-1.2
4,007,550	-		IAI47_18795	0.56	+1.1
4,007,550	-		IAI47_18795	0.56	+1.1
4,007,550	-		IAI47_18795	0.56	-0.2
4,007,550	-		IAI47_18795	0.56	+0.4
4,007,550	-		IAI47_18795	0.56	-0.7
4,007,584	+		IAI47_18795	0.59	-3.0
4,007,585	-		IAI47_18795	0.59	+0.1
4,007,626	+		IAI47_18795	0.63	+2.1
4,007,644	+		IAI47_18795	0.65	+1.4
4,007,644	+		IAI47_18795	0.65	-0.0
4,007,644	+		IAI47_18795	0.65	+0.1
4,007,645	-		IAI47_18795	0.65	-0.2
4,007,645	-		IAI47_18795	0.65	-0.6
4,007,645	-		IAI47_18795	0.65	+0.3
4,007,645	-		IAI47_18795	0.65	+0.4
4,007,647	+		IAI47_18795	0.66	+1.1
4,007,647	+		IAI47_18795	0.66	+0.8
4,007,647	+		IAI47_18795	0.66	+1.8
4,007,648	-		IAI47_18795	0.66	-0.2
4,007,648	-		IAI47_18795	0.66	+0.2
4,007,648	-		IAI47_18795	0.66	-0.1
4,007,648	-		IAI47_18795	0.66	+0.6
4,007,689	+		IAI47_18795	0.70	+0.4
4,007,695	+		IAI47_18795	0.70	-0.3
4,007,696	-		IAI47_18795	0.70	+0.3
4,007,696	-		IAI47_18795	0.70	+0.5
4,007,702	+		IAI47_18795	0.71	-0.7
4,007,703	-		IAI47_18795	0.71	+0.2
4,007,703	-		IAI47_18795	0.71	-0.9
4,007,708	+		IAI47_18795	0.72	+1.2
4,007,708	+		IAI47_18795	0.72	+0.7
4,007,708	+		IAI47_18795	0.72	+0.3
4,007,708	+		IAI47_18795	0.72	-0.6
4,007,709	-		IAI47_18795	0.72	-2.0
4,007,729	-		IAI47_18795	0.74	-1.6
4,007,758	+		IAI47_18795	0.77	-0.4
4,007,759	-		IAI47_18795	0.77	-0.4