Strain Fitness in Pantoea sp. MT58 around IAI47_18035

Experiment: Ying_all64 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 1
3,835,531	-				+0.8
3,835,544	-				+0.4
3,835,544	-				+1.0
3,835,544	-				+0.1
3,835,544	-				-0.5
3,835,555	-				-0.1
3,835,555	-				+0.1
3,835,560	-				-0.2
3,835,560	-				-1.3
3,835,560	-				-0.7
3,835,560	-				-1.6
3,835,560	-				-0.1
3,835,560	-				-1.1
3,835,560	-				-1.5
3,835,560	-				-0.5
3,835,560	-				+0.3
3,835,674	-				+0.8
3,835,674	-				+0.9
3,835,674	-				-0.2
3,835,674	-				-0.2
3,835,674	-				-1.6
3,835,674	-				-2.9
3,835,674	-				-1.0
3,835,674	-				-1.2
3,835,674	-				-0.1
3,835,674	-				+1.2
3,835,674	-				-0.4
3,835,747	-				+0.6
3,835,747	-				+1.8
3,835,747	-				-0.8
3,837,250	-				+0.4
3,837,250	-				-1.2
3,837,250	-				+0.6
3,837,250	-				+2.8
3,837,625	+				+1.0
3,837,625	+				-0.6
3,837,626	-				+0.2
3,837,626	-				-0.2
3,837,627	+				+2.0
3,837,627	+				-0.2
3,837,628	-				-0.5
3,837,628	-				-0.6
3,837,628	-				-0.2
3,837,628	-				+0.8
3,837,656	-				-0.1
3,837,664	+				+1.2
3,837,664	+				+0.1
3,837,665	-				+0.8
3,837,706	+				-0.2
3,837,707	-				-0.0
3,837,708	+				+0.2
3,837,708	+				-0.3
3,837,709	-				-0.7
3,837,716	+				-0.6
3,837,716	+				+0.8
3,837,717	-				+1.0
3,837,717	-				-0.6
3,837,717	-				+1.2
3,837,728	+				+1.4
3,837,729	-				-0.6
3,837,746	+				-0.3
3,837,747	-				-1.0
3,837,747	-				-0.6
3,837,748	+				+1.5
3,837,748	+				+0.4
3,837,748	+				+0.0
3,837,748	+				+0.4
3,837,748	+				-0.2
3,837,748	+				-1.2
3,837,749	-				-1.2
3,837,749	-				+1.5
3,837,826	+				+1.4
3,837,827	-				-0.5
3,837,827	-				+0.8
3,837,853	+				+0.1
3,837,853	+				+0.0
3,837,853	+				-0.5
3,837,853	+				-0.6
3,837,853	+				+0.4
3,837,853	+				-0.1
3,837,853	+				-0.1
3,837,853	+				+0.6
3,837,854	-				-0.5
3,837,854	-				+0.0
3,837,854	-				+0.1
3,837,854	-				-0.8
3,837,854	-				-2.9
3,837,854	-				-0.8
3,837,854	-				-0.9
3,837,854	-				+0.4
3,837,855	+				+0.1
3,837,855	+				+0.8
3,837,855	+				+0.6
3,837,855	+				-0.2
3,837,855	+				+1.4
3,837,856	-				-1.2
3,837,856	-				-1.0
3,837,857	+				+0.5
3,837,857	+				-1.5
3,837,857	+				+1.2
3,837,857	+				+0.3
3,837,857	+				+2.0
3,837,857	+				-0.5
3,837,857	+				-0.8
3,837,857	+				-1.0
3,837,857	+				+0.2
3,837,857	+				-0.9
3,837,857	+				+2.4
3,837,857	+				+0.2
3,837,857	+				+0.4
3,837,857	+				-0.8
3,837,857	+				-1.3
3,837,857	+				+0.8
3,837,857	+				-0.1
3,837,858	-				-0.8
3,837,858	-				-0.7
3,837,858	-				-0.8
3,837,858	-				-1.1
3,837,858	-				-2.0
3,837,858	-				-0.8
3,837,858	-				+1.3
3,837,858	-				-0.2
3,837,858	-				+0.2
3,837,858	-				-0.8
3,837,858	-				+0.0
3,837,858	-				+0.2
3,837,858	-				+1.1
3,837,858	-				+0.4
3,837,887	+				+0.1
3,837,887	+				+0.5
3,837,887	+				-0.1
3,837,887	+				+0.6
3,837,887	+				+2.4
3,837,887	+				-0.6
3,837,887	+				+0.6
3,837,888	-				-1.1
3,837,888	-				-0.7
3,837,888	-				+0.0
3,837,888	-				+0.4
3,837,888	-				-0.6
3,837,888	-				+0.8
3,837,888	-				-1.6
3,837,896	+				-0.2
3,837,896	+				-1.4
3,837,896	+				-0.3
3,837,896	+				-0.4
3,837,896	+				+0.4
3,837,896	+				+0.2
3,837,896	+				-1.6
3,837,896	+				-0.7
3,837,896	+				+1.5
3,837,896	+				-0.1
3,837,896	+				+0.1
3,837,896	+				-1.2
3,837,897	-				+0.4
3,837,897	-				-0.3
3,837,897	-				+0.1
3,837,897	-				+0.5
3,837,897	-				+0.2
3,837,897	-				+1.0
3,837,898	+				+0.8
3,837,898	+				+0.5
3,837,898	+				+0.2
3,837,898	+				-0.2
3,837,898	+				+0.2
3,837,898	+				-0.7
3,837,898	+				+0.8
3,837,899	-				+0.2
3,837,899	-				-0.1
3,837,899	-				+0.4
3,837,899	-				-0.6
3,837,899	-				+1.4
3,837,899	-				-2.0
3,837,899	-				+1.1
3,837,899	-				-0.7
3,837,899	-				-0.5
3,837,899	-				+0.1
3,837,899	-				-0.1
3,837,900	+				+0.4
3,837,900	+				-0.5
3,837,900	+				+1.4
3,837,900	+				-0.2
3,837,900	+				-1.3
3,837,900	+				-1.1
3,837,900	+				+0.3
3,837,901	-				-0.2
3,837,901	-				+0.2
3,837,923	-				+0.4
3,838,099	+		IAI47_18040	0.11	-0.6
3,838,099	+		IAI47_18040	0.11	-0.8
3,838,100	-		IAI47_18040	0.11	-0.2
3,838,169	+		IAI47_18040	0.15	+0.0
3,838,169	+		IAI47_18040	0.15	-1.0
3,838,170	-		IAI47_18040	0.15	+0.4
3,838,170	-		IAI47_18040	0.15	-1.4
3,838,170	-		IAI47_18040	0.15	-0.9
3,838,212	+		IAI47_18040	0.18	-0.8
3,838,213	-		IAI47_18040	0.18	-2.7
3,838,213	-		IAI47_18040	0.18	-0.6
3,838,213	-		IAI47_18040	0.18	-0.8
3,838,246	+		IAI47_18040	0.20	-1.2
3,838,246	+		IAI47_18040	0.20	+0.1
3,838,246	+		IAI47_18040	0.20	+0.1
3,838,247	-		IAI47_18040	0.20	-0.2