Strain Fitness in Pantoea sp. MT58 around IAI47_17310

Experiment: Ying_all64 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 1
3,667,174	-				+0.2
3,667,174	-				+0.8
3,667,626	+				+1.0
3,667,626	+				-0.6
3,667,627	-				-0.8
3,667,627	-				+1.2
3,667,657	+				-2.8
3,667,661	+				+0.4
3,667,698	+				-0.1
3,667,698	+				-0.2
3,667,699	-				-0.2
3,667,699	-				-0.0
3,667,699	-				+2.2
3,667,699	-				-0.5
3,667,699	-				+0.8
3,667,756	-		IAI47_17315	0.10	+0.8
3,667,779	+		IAI47_17315	0.15	+0.0
3,667,779	+		IAI47_17315	0.15	-0.1
3,667,779	+		IAI47_17315	0.15	-1.8
3,667,779	+		IAI47_17315	0.15	+0.4
3,667,779	+		IAI47_17315	0.15	-0.0
3,667,779	+		IAI47_17315	0.15	+0.6
3,667,780	-		IAI47_17315	0.16	-0.8
3,667,780	-		IAI47_17315	0.16	-0.2
3,667,780	-		IAI47_17315	0.16	-0.5
3,667,780	-		IAI47_17315	0.16	-0.8
3,667,780	-		IAI47_17315	0.16	+1.3
3,667,781	+		IAI47_17315	0.16	+0.8
3,667,781	+		IAI47_17315	0.16	-1.0
3,667,782	-		IAI47_17315	0.16	+0.1
3,667,782	-		IAI47_17315	0.16	+0.4
3,667,782	-		IAI47_17315	0.16	+0.8
3,667,859	-		IAI47_17315	0.33	+0.2
3,667,859	-		IAI47_17315	0.33	+0.2
3,667,859	-		IAI47_17315	0.33	-0.3
3,667,952	-		IAI47_17315	0.53	-1.0
3,667,977	+		IAI47_17315	0.58	-0.7
3,668,004	+		IAI47_17315	0.64	-0.9
3,668,004	+		IAI47_17315	0.64	-0.3
3,668,004	+		IAI47_17315	0.64	+0.4
3,668,005	-		IAI47_17315	0.64	+0.8
3,668,076	+		IAI47_17315	0.80	-0.0
3,668,076	+		IAI47_17315	0.80	+0.8
3,668,077	-		IAI47_17315	0.80	-0.7
3,668,077	-		IAI47_17315	0.80	-0.5
3,668,077	-		IAI47_17315	0.80	+1.0
3,668,077	-		IAI47_17315	0.80	+0.1
3,668,126	-				-0.9
3,668,149	+				-1.2
3,668,149	+				+1.6
3,668,150	-				+0.1
3,668,150	-				+1.4
3,668,150	-				+0.4
3,668,152	+				-0.3
3,668,153	-				-1.2
3,668,153	-				+0.6
3,668,172	+				+0.2
3,668,172	+				-0.5
3,668,172	+				-0.4
3,668,172	+				-0.0
3,668,172	+				-0.8
3,668,173	-				-1.8
3,668,173	-				+0.3
3,668,173	-				+1.0
3,668,173	-				-0.4
3,668,182	+				+0.8
3,668,182	+				-1.5
3,668,182	+				+0.6
3,668,182	+				-0.9
3,668,182	+				+0.3
3,668,182	+				+0.3
3,668,182	+				-0.2
3,668,182	+				-0.7
3,668,182	+				+1.3
3,668,182	+				+0.8
3,668,183	-				-0.4
3,668,183	-				-0.5
3,668,183	-				-0.1
3,668,183	-				-0.4
3,668,183	-				+0.2
3,668,183	-				+0.2
3,668,183	-				+1.2
3,668,186	+				+1.1
3,668,186	+				-0.8
3,668,186	+				-0.8
3,668,186	+				+0.3
3,668,187	-				-1.8
3,668,240	+				-0.1
3,668,240	+				-1.1
3,668,240	+				-0.6
3,668,240	+				+0.5
3,668,240	+				-0.5
3,668,241	-				-1.0
3,668,241	-				+0.1
3,668,241	-				+0.6
3,668,241	-				-0.5
3,668,328	+				-0.2
3,668,328	+				+0.8
3,668,329	-				-0.4
3,668,329	-				+0.2
3,668,351	+				-1.2
3,668,351	+				-1.8
3,668,351	+				-0.6
3,668,351	+				+0.5
3,668,351	+				-0.2
3,668,352	-				-0.2
3,668,352	-				+0.0
3,668,352	-				-2.0
3,668,378	-				-0.8
3,668,378	-				-0.3
3,668,389	+				+0.7
3,668,389	+				+0.3
3,668,389	+				-0.4
3,668,389	+				-0.2
3,668,390	-				+0.5
3,668,390	-				-0.2
3,668,419	+				+1.6
3,668,419	+				-0.5
3,668,419	+				+0.8
3,668,419	+				-1.2
3,668,420	-				-0.2
3,668,422	+				+0.8
3,668,422	+				-0.0
3,668,422	+				-0.9
3,668,422	+				-0.7
3,668,422	+				+0.9
3,668,422	+				-0.1
3,668,422	+				-0.1
3,668,422	+				-0.0
3,668,422	+				-0.9
3,668,423	-				+0.2
3,668,423	-				+1.1
3,668,423	-				+1.2
3,668,423	-				+0.3
3,668,423	-				+0.6
3,668,423	-				+1.8
3,668,423	-				-0.8
3,668,423	-				-1.2
3,668,423	-				-1.0
3,668,423	-				+0.6
3,668,423	-				-1.2
3,668,423	-				-0.5
3,668,423	-				-0.7
3,668,423	-				-0.4
3,668,423	-				+0.3
3,668,423	-				+0.1
3,668,423	-				+2.1
3,668,423	-				+0.5
3,668,451	+				-0.6
3,668,451	+				+1.1
3,668,451	+				-0.7
3,668,451	+				+1.3
3,668,451	+				+1.0
3,668,452	-				-1.5
3,668,452	-				-0.2
3,668,474	-				-0.2