Strain Fitness in Pantoea sp. MT58 around IAI47_16130

Experiment: Ying_all64 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 1
3,414,828	-				-1.6
3,414,828	-				+1.1
3,414,841	+				+0.9
3,414,852	+				+0.5
3,414,852	+				-0.2
3,414,852	+				-0.5
3,414,853	-				+0.4
3,414,853	-				-0.5
3,414,902	+				-0.3
3,414,902	+				+2.5
3,414,902	+				-0.7
3,414,903	-				-1.1
3,414,903	-				+0.5
3,414,905	+				-0.7
3,414,905	+				+0.4
3,414,905	+				+0.2
3,414,906	-				+0.1
3,414,906	-				-0.0
3,414,906	-				-0.4
3,414,915	+				+0.6
3,414,915	+				-0.8
3,414,915	+				+0.2
3,414,915	+				-0.1
3,414,916	-				-0.0
3,414,916	-				+1.1
3,414,918	+				+0.4
3,414,918	+				-0.7
3,414,918	+				-1.2
3,414,919	-				-0.5
3,414,919	-				+0.7
3,414,928	-				-0.2
3,414,928	-				+1.5
3,414,946	+				-0.8
3,414,947	-				+1.0
3,414,947	-				+1.3
3,414,947	-				-0.7
3,414,952	+				+1.2
3,414,996	+				+0.8
3,414,997	-				-1.1
3,414,997	-				-0.4
3,414,997	-				-1.2
3,415,041	-				+0.8
3,415,041	-				-0.2
3,415,052	-				-0.3
3,415,052	-				+0.6
3,415,061	+				-1.6
3,415,061	+				+0.8
3,415,062	-				-0.8
3,415,062	-				+0.3
3,415,062	-				+0.5
3,415,062	-				+0.8
3,415,062	-				-0.6
3,415,062	-				-1.0
3,415,062	-				+0.0
3,415,065	+				-0.7
3,415,066	-				-0.8
3,415,066	-				-0.5
3,415,066	-				-0.4
3,415,066	-				-0.8
3,415,066	-				+0.8
3,415,085	+				+0.0
3,415,086	-				+0.1
3,415,086	-				+1.1
3,415,086	-				-0.1
3,416,042	-		IAI47_16135	0.12	-0.8
3,416,042	-		IAI47_16135	0.12	-0.2
3,416,042	-		IAI47_16135	0.12	-0.3
3,416,042	-		IAI47_16135	0.12	-0.2
3,416,042	-		IAI47_16135	0.12	+0.3
3,416,095	-		IAI47_16135	0.24	+1.2
3,416,095	-		IAI47_16135	0.24	-0.7
3,416,095	-		IAI47_16135	0.24	-0.1
3,416,095	-		IAI47_16135	0.24	-0.6
3,416,194	-		IAI47_16135	0.45	+0.8
3,416,194	-		IAI47_16135	0.45	+1.3
3,416,214	-		IAI47_16135	0.49	+1.3
3,416,266	-		IAI47_16135	0.60	+1.4
3,416,266	-		IAI47_16135	0.60	-0.1
3,416,410	-				+0.3
3,416,460	-				-0.2
3,416,460	-				+0.4