Strain Fitness in Pantoea sp. MT58 around IAI47_15545

Experiment: Ying_all64 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 1
3,274,830	-		IAI47_15540	0.66	-0.1
3,274,905	+		IAI47_15540	0.69	-0.8
3,275,075	+		IAI47_15540	0.75	-2.7
3,275,089	+		IAI47_15540	0.76	-2.1
3,275,198	-		IAI47_15540	0.80	-2.1
3,275,315	-				+0.2
3,275,320	+		IAI47_15540	0.84	+0.7
3,275,320	+		IAI47_15540	0.84	-1.3
3,275,321	-		IAI47_15540	0.84	-0.8
3,275,635	-				+0.3
3,275,716	+				-0.4
3,275,717	-				+1.8
3,275,728	+				-0.1
3,275,728	+				-0.1
3,275,753	-				-1.6
3,275,759	+				+0.7
3,275,759	+				+0.9
3,275,759	+				+0.0
3,275,759	+				-0.3
3,275,759	+				+0.7
3,275,759	+				-0.6
3,275,759	+				-0.5
3,275,760	-				-0.8
3,275,760	-				+0.7
3,275,764	+				+0.9
3,275,764	+				+0.1
3,275,764	+				-1.1
3,275,764	+				+0.0
3,275,764	+				-0.2
3,275,764	+				-0.3
3,275,764	+				-0.3
3,275,764	+				+0.3
3,275,764	+				-0.4
3,275,764	+				-0.3
3,276,686	+				-0.7
3,276,692	+				+0.2
3,276,692	+				+0.3
3,276,693	-				-0.6
3,276,738	-				+1.0
3,276,755	+				+0.4
3,276,756	-				-0.3
3,276,756	-				-1.3
3,276,769	+				+0.5
3,276,770	-				+1.1
3,276,770	-				-0.5
3,276,799	+				+2.2
3,276,799	+				-0.3
3,276,799	+				-1.5
3,276,799	+				-0.3
3,276,799	+				-0.4
3,276,799	+				-0.1
3,276,799	+				+1.6
3,276,799	+				+0.9
3,276,800	-				+0.6
3,276,803	+				-0.0
3,276,803	+				-1.6
3,276,803	+				-0.1
3,276,803	+				+0.2
3,276,803	+				+0.6
3,276,804	-				+0.4
3,276,804	-				-0.8
3,276,804	-				+0.6
3,276,804	-				-1.1
3,276,804	-				+0.5
3,276,804	-				+0.2
3,276,804	-				-1.0
3,276,804	-				+0.2
3,276,809	+				+0.7
3,276,809	+				+1.7
3,276,809	+				-0.3
3,276,809	+				+0.2
3,276,810	-				-2.1
3,276,810	-				-0.5
3,276,810	-				-0.8
3,276,810	-				+0.2
3,276,810	-				-0.7
3,276,810	-				+0.2
3,276,810	-				-0.4
3,276,810	-				-0.7
3,276,810	-				-0.4
3,276,810	-				-1.6
3,276,869	+				+0.7
3,276,869	+				+1.3
3,276,869	+				-0.2
3,276,869	+				+0.3
3,276,869	+				-0.2
3,276,869	+				+0.9
3,276,869	+				-0.3
3,276,869	+				+0.2
3,276,869	+				-1.2
3,276,869	+				+0.2
3,276,869	+				+0.4
3,276,870	-				+0.5
3,276,870	-				-0.8
3,276,870	-				+0.0
3,276,870	-				+1.7
3,276,873	+				+0.3
3,276,873	+				-0.3
3,276,873	+				-1.3
3,276,873	+				-0.0
3,276,873	+				-2.1
3,276,873	+				+0.0
3,276,873	+				-0.3
3,276,873	+				-1.0
3,276,873	+				-1.6
3,276,873	+				-0.4
3,276,873	+				-0.3
3,276,873	+				+0.3
3,276,873	+				-0.6
3,276,873	+				-0.1
3,276,873	+				+0.6
3,276,874	-				-0.1
3,276,874	-				+0.0
3,276,874	-				-2.1
3,276,874	-				+0.0
3,276,874	-				+0.9
3,276,874	-				+1.1
3,276,874	-				+0.6
3,276,874	-				-1.6
3,276,874	-				-0.8
3,276,874	-				+1.2
3,276,874	-				+0.2
3,276,874	-				-0.3
3,276,874	-				-0.1
3,276,892	+				+2.1
3,276,892	+				-0.1
3,276,892	+				+0.6
3,276,892	+				+0.3
3,276,892	+				-0.3
3,276,893	-				-1.3
3,276,893	-				-1.0
3,276,893	-				-0.1
3,276,893	-				-1.0
3,276,893	-				+0.0
3,276,893	-				+1.7
3,276,893	-				+0.2
3,276,893	-				+0.1
3,276,893	-				+0.7
3,276,896	+				+1.1
3,276,896	+				-1.4
3,276,896	+				-0.3
3,276,896	+				-0.6
3,276,897	-				-0.7
3,276,897	-				+0.7
3,276,925	-		IAI47_15550	0.14	+0.7
3,276,925	-		IAI47_15550	0.14	+0.3
3,276,925	-		IAI47_15550	0.14	-0.3
3,276,925	-		IAI47_15550	0.14	-0.1
3,276,966	+		IAI47_15550	0.24	-0.0
3,276,966	+		IAI47_15550	0.24	+0.1
3,276,966	+		IAI47_15550	0.24	+1.5
3,276,980	+		IAI47_15550	0.28	-0.1
3,276,980	+		IAI47_15550	0.28	+0.2
3,276,981	-		IAI47_15550	0.28	+1.0
3,276,981	-		IAI47_15550	0.28	+0.6
3,276,981	-		IAI47_15550	0.28	-1.0
3,277,065	+		IAI47_15550	0.50	-0.3
3,277,101	+		IAI47_15550	0.59	-0.2
3,277,101	+		IAI47_15550	0.59	-2.3
3,277,101	+		IAI47_15550	0.59	+1.3
3,277,101	+		IAI47_15550	0.59	-1.0
3,277,101	+		IAI47_15550	0.59	-0.5
3,277,101	+		IAI47_15550	0.59	+0.5
3,277,102	-		IAI47_15550	0.59	+0.7
3,277,102	-		IAI47_15550	0.59	+0.5
3,277,102	-		IAI47_15550	0.59	-0.3
3,277,102	-		IAI47_15550	0.59	+0.3
3,277,102	-		IAI47_15550	0.59	+0.0
3,277,189	+		IAI47_15550	0.81	+0.4
3,277,189	+		IAI47_15550	0.81	-1.5
3,277,189	+		IAI47_15550	0.81	+1.0
3,277,190	-		IAI47_15550	0.81	+1.9
3,277,190	-		IAI47_15550	0.81	+1.0
3,277,250	+				-0.9
3,277,305	+				-0.8
3,277,325	+				-0.0
3,277,325	+				+1.3
3,277,326	-				+1.3
3,277,326	-				-0.4
3,277,326	-				+0.2
3,277,345	+				-0.3
3,277,345	+				+0.7
3,277,345	+				-2.8
3,277,345	+				-1.1
3,277,345	+				+0.1
3,277,355	+				-1.8
3,277,355	+				-0.3
3,277,355	+				-0.4
3,277,355	+				+0.7
3,277,355	+				+0.3
3,277,355	+				+1.7
3,277,355	+				+0.0
3,277,355	+				+1.4
3,277,356	-				+0.4
3,277,356	-				+0.5
3,277,356	-				+1.2
3,277,356	-				-1.6
3,277,356	-				-0.2
3,277,356	-				+0.1
3,277,435	-				-1.8
3,277,482	+		IAI47_15555	0.14	+0.2
3,277,482	+		IAI47_15555	0.14	-0.1
3,277,482	+		IAI47_15555	0.14	+0.2
3,277,501	+		IAI47_15555	0.15	-1.1
3,277,539	+		IAI47_15555	0.19	+1.9
3,277,540	-		IAI47_15555	0.19	+0.2
3,277,540	-		IAI47_15555	0.19	-1.0
3,277,540	-		IAI47_15555	0.19	-0.4
3,277,540	-		IAI47_15555	0.19	+0.0
3,277,540	-		IAI47_15555	0.19	+0.7
3,277,626	-		IAI47_15555	0.26	-0.8
3,277,631	+		IAI47_15555	0.27	+0.1
3,277,631	+		IAI47_15555	0.27	+2.6
3,277,631	+		IAI47_15555	0.27	+1.4
3,277,631	+		IAI47_15555	0.27	+0.6
3,277,631	+		IAI47_15555	0.27	+0.4
3,277,632	-		IAI47_15555	0.27	-1.0
3,277,639	+		IAI47_15555	0.27	-0.5
3,277,640	-		IAI47_15555	0.27	-0.1
3,277,640	-		IAI47_15555	0.27	-0.1