Experiment: Ying_all64 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_15500 and IAI47_15505 are separated by 18 nucleotides IAI47_15505 and IAI47_15510 are separated by 181 nucleotides IAI47_15510 and IAI47_15515 are separated by 111 nucleotides IAI47_15515 and IAI47_15520 are separated by 143 nucleotides
IAI47_15500: IAI47_15500 - phosphatidate cytidylyltransferase, at 3,265,442 to 3,266,299
_15500
IAI47_15505: IAI47_15505 - (2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase, at 3,266,318 to 3,267,070
_15505
IAI47_15510: IAI47_15510 - 1-deoxy-D-xylulose-5-phosphate reductoisomerase, at 3,267,252 to 3,268,448
_15510
IAI47_15515: IAI47_15515 - ribosome recycling factor, at 3,268,560 to 3,269,117
_15515
IAI47_15520: IAI47_15520 - UMP kinase, at 3,269,261 to 3,269,986
_15520
Position (kb)
3267
3268
3269 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3267.117 kb on - strand at 3267.162 kb on - strand at 3267.205 kb on - strand at 3267.205 kb on - strand at 3267.205 kb on - strand at 3267.205 kb on - strand at 3267.207 kb on - strand at 3267.207 kb on - strand at 3267.207 kb on - strand at 3267.241 kb on - strand at 3268.491 kb on - strand at 3268.491 kb on - strand at 3268.491 kb on - strand at 3268.491 kb on - strand at 3268.517 kb on - strand at 3268.523 kb on - strand at 3268.523 kb on - strand at 3268.523 kb on - strand at 3268.523 kb on - strand at 3268.523 kb on - strand at 3268.523 kb on - strand at 3268.533 kb on - strand at 3268.533 kb on - strand at 3269.234 kb on - strand at 3269.234 kb on - strand at 3269.234 kb on - strand at 3269.234 kb on - strand at 3269.235 kb on + strand at 3269.235 kb on + strand at 3269.235 kb on + strand at 3269.236 kb on - strand at 3269.236 kb on - strand at 3269.236 kb on - strand at 3269.236 kb on - strand at 3269.236 kb on - strand at 3269.236 kb on - strand at 3269.236 kb on - strand at 3269.236 kb on - strand at 3269.236 kb on - strand at 3269.236 kb on - strand at 3269.240 kb on + strand at 3269.240 kb on + strand at 3269.240 kb on + strand at 3269.241 kb on - strand at 3269.241 kb on - strand at 3269.241 kb on - strand at 3269.241 kb on - strand at 3269.262 kb on + strand at 3269.262 kb on + strand at 3269.262 kb on + strand at 3269.263 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1 remove 3,267,117 - +2.1 3,267,162 - -0.0 3,267,205 - +2.3 3,267,205 - +0.0 3,267,205 - -0.4 3,267,205 - +0.9 3,267,207 - +0.7 3,267,207 - +0.2 3,267,207 - +0.3 3,267,241 - +0.7 3,268,491 - -1.7 3,268,491 - -0.5 3,268,491 - +2.0 3,268,491 - +1.6 3,268,517 - -0.1 3,268,523 - +0.3 3,268,523 - -0.6 3,268,523 - +0.3 3,268,523 - -0.7 3,268,523 - +0.5 3,268,523 - +0.7 3,268,533 - +0.7 3,268,533 - +0.6 3,269,234 - +0.2 3,269,234 - -1.4 3,269,234 - +0.7 3,269,234 - +1.2 3,269,235 + -0.8 3,269,235 + -1.4 3,269,235 + +0.7 3,269,236 - -0.3 3,269,236 - +0.3 3,269,236 - -1.0 3,269,236 - -1.5 3,269,236 - -1.5 3,269,236 - +0.2 3,269,236 - -2.1 3,269,236 - -0.7 3,269,236 - +0.0 3,269,236 - +0.2 3,269,240 + +0.4 3,269,240 + +0.2 3,269,240 + +0.3 3,269,241 - +0.4 3,269,241 - -0.8 3,269,241 - +0.2 3,269,241 - -0.2 3,269,262 + +0.1 3,269,262 + +0.7 3,269,262 + -0.8 3,269,263 - +0.7
Or see this region's nucleotide sequence