Strain Fitness in Pantoea sp. MT58 around IAI47_15510

Experiment: Ying_all64 rep A; time point 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI47_15500 and IAI47_15505 are separated by 18 nucleotidesIAI47_15505 and IAI47_15510 are separated by 181 nucleotidesIAI47_15510 and IAI47_15515 are separated by 111 nucleotidesIAI47_15515 and IAI47_15520 are separated by 143 nucleotides IAI47_15500: IAI47_15500 - phosphatidate cytidylyltransferase, at 3,265,442 to 3,266,299 _15500 IAI47_15505: IAI47_15505 - (2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase, at 3,266,318 to 3,267,070 _15505 IAI47_15510: IAI47_15510 - 1-deoxy-D-xylulose-5-phosphate reductoisomerase, at 3,267,252 to 3,268,448 _15510 IAI47_15515: IAI47_15515 - ribosome recycling factor, at 3,268,560 to 3,269,117 _15515 IAI47_15520: IAI47_15520 - UMP kinase, at 3,269,261 to 3,269,986 _15520 Position (kb) 3267 3268 3269Strain fitness (log2 ratio) -2 -1 0 1 2at 3267.117 kb on - strandat 3267.162 kb on - strandat 3267.205 kb on - strandat 3267.205 kb on - strandat 3267.205 kb on - strandat 3267.205 kb on - strandat 3267.207 kb on - strandat 3267.207 kb on - strandat 3267.207 kb on - strandat 3267.241 kb on - strandat 3268.491 kb on - strandat 3268.491 kb on - strandat 3268.491 kb on - strandat 3268.491 kb on - strandat 3268.517 kb on - strandat 3268.523 kb on - strandat 3268.523 kb on - strandat 3268.523 kb on - strandat 3268.523 kb on - strandat 3268.523 kb on - strandat 3268.523 kb on - strandat 3268.533 kb on - strandat 3268.533 kb on - strandat 3269.234 kb on - strandat 3269.234 kb on - strandat 3269.234 kb on - strandat 3269.234 kb on - strandat 3269.235 kb on + strandat 3269.235 kb on + strandat 3269.235 kb on + strandat 3269.236 kb on - strandat 3269.236 kb on - strandat 3269.236 kb on - strandat 3269.236 kb on - strandat 3269.236 kb on - strandat 3269.236 kb on - strandat 3269.236 kb on - strandat 3269.236 kb on - strandat 3269.236 kb on - strandat 3269.236 kb on - strandat 3269.240 kb on + strandat 3269.240 kb on + strandat 3269.240 kb on + strandat 3269.241 kb on - strandat 3269.241 kb on - strandat 3269.241 kb on - strandat 3269.241 kb on - strandat 3269.262 kb on + strandat 3269.262 kb on + strandat 3269.262 kb on + strandat 3269.263 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1
remove
3,267,117 - +2.1
3,267,162 - -0.0
3,267,205 - +2.3
3,267,205 - +0.0
3,267,205 - -0.4
3,267,205 - +0.9
3,267,207 - +0.7
3,267,207 - +0.2
3,267,207 - +0.3
3,267,241 - +0.7
3,268,491 - -1.7
3,268,491 - -0.5
3,268,491 - +2.0
3,268,491 - +1.6
3,268,517 - -0.1
3,268,523 - +0.3
3,268,523 - -0.6
3,268,523 - +0.3
3,268,523 - -0.7
3,268,523 - +0.5
3,268,523 - +0.7
3,268,533 - +0.7
3,268,533 - +0.6
3,269,234 - +0.2
3,269,234 - -1.4
3,269,234 - +0.7
3,269,234 - +1.2
3,269,235 + -0.8
3,269,235 + -1.4
3,269,235 + +0.7
3,269,236 - -0.3
3,269,236 - +0.3
3,269,236 - -1.0
3,269,236 - -1.5
3,269,236 - -1.5
3,269,236 - +0.2
3,269,236 - -2.1
3,269,236 - -0.7
3,269,236 - +0.0
3,269,236 - +0.2
3,269,240 + +0.4
3,269,240 + +0.2
3,269,240 + +0.3
3,269,241 - +0.4
3,269,241 - -0.8
3,269,241 - +0.2
3,269,241 - -0.2
3,269,262 + +0.1
3,269,262 + +0.7
3,269,262 + -0.8
3,269,263 - +0.7

Or see this region's nucleotide sequence