Strain Fitness in Pantoea sp. MT58 around IAI47_15500

Experiment: Ying_all64 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_15495 and IAI47_15500 are separated by 12 nucleotidesIAI47_15500 and IAI47_15505 are separated by 18 nucleotidesIAI47_15505 and IAI47_15510 are separated by 181 nucleotides IAI47_15495: IAI47_15495 - sigma E protease regulator RseP, at 3,264,083 to 3,265,429 _15495 IAI47_15500: IAI47_15500 - phosphatidate cytidylyltransferase, at 3,265,442 to 3,266,299 _15500 IAI47_15505: IAI47_15505 - (2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase, at 3,266,318 to 3,267,070 _15505 IAI47_15510: IAI47_15510 - 1-deoxy-D-xylulose-5-phosphate reductoisomerase, at 3,267,252 to 3,268,448 _15510 Position (kb) 3265 3266 3267Strain fitness (log2 ratio) -1 0 1 2at 3267.117 kb on - strandat 3267.162 kb on - strandat 3267.205 kb on - strandat 3267.205 kb on - strandat 3267.205 kb on - strandat 3267.205 kb on - strandat 3267.207 kb on - strandat 3267.207 kb on - strandat 3267.207 kb on - strandat 3267.241 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1
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3,267,117 - +2.1
3,267,162 - -0.0
3,267,205 - +2.3
3,267,205 - +0.0
3,267,205 - -0.4
3,267,205 - +0.9
3,267,207 - +0.7
3,267,207 - +0.2
3,267,207 - +0.3
3,267,241 - +0.7

Or see this region's nucleotide sequence