Strain Fitness in Pantoea sp. MT58 around IAI47_13600

Experiment: Ying_all64 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 1
2,883,285	+		IAI47_13595	0.19	+1.4
2,883,286	-		IAI47_13595	0.20	+1.0
2,883,310	-		IAI47_13595	0.22	+0.8
2,883,310	-		IAI47_13595	0.22	-0.7
2,883,310	-		IAI47_13595	0.22	+0.4
2,883,342	-		IAI47_13595	0.25	-0.3
2,883,348	-		IAI47_13595	0.26	+0.2
2,883,365	+		IAI47_13595	0.27	-0.1
2,883,376	+		IAI47_13595	0.28	+0.6
2,883,376	+		IAI47_13595	0.28	-1.2
2,883,377	-		IAI47_13595	0.28	+0.5
2,883,377	-		IAI47_13595	0.28	+0.2
2,883,377	-		IAI47_13595	0.28	+0.3
2,883,377	-		IAI47_13595	0.28	-0.8
2,883,377	-		IAI47_13595	0.28	-0.2
2,883,519	+		IAI47_13595	0.42	+0.2
2,883,520	-		IAI47_13595	0.42	-0.0
2,883,555	+		IAI47_13595	0.46	-0.6
2,883,555	+		IAI47_13595	0.46	+0.1
2,883,556	-		IAI47_13595	0.46	-0.1
2,883,556	-		IAI47_13595	0.46	-0.3
2,883,606	+		IAI47_13595	0.50	+1.0
2,883,606	+		IAI47_13595	0.50	-0.6
2,883,606	+		IAI47_13595	0.50	-0.2
2,883,606	+		IAI47_13595	0.50	-0.1
2,883,606	+		IAI47_13595	0.50	+1.1
2,883,606	+		IAI47_13595	0.50	+0.6
2,883,607	-		IAI47_13595	0.51	-2.4
2,883,607	-		IAI47_13595	0.51	-0.6
2,883,607	-		IAI47_13595	0.51	+1.5
2,883,611	+		IAI47_13595	0.51	-0.6
2,883,612	-		IAI47_13595	0.51	+0.1
2,883,652	+		IAI47_13595	0.55	-0.2
2,883,652	+		IAI47_13595	0.55	+0.1
2,883,652	+		IAI47_13595	0.55	-2.1
2,883,653	-		IAI47_13595	0.55	-0.2
2,883,653	-		IAI47_13595	0.55	-1.1
2,883,653	-		IAI47_13595	0.55	+0.6
2,883,672	+		IAI47_13595	0.57	+0.1
2,883,672	+		IAI47_13595	0.57	-0.8
2,883,672	+		IAI47_13595	0.57	-0.3
2,883,672	+		IAI47_13595	0.57	+0.8
2,883,672	+		IAI47_13595	0.57	+0.6
2,883,673	-		IAI47_13595	0.57	+0.6
2,883,673	-		IAI47_13595	0.57	-0.4
2,883,676	+		IAI47_13595	0.57	+1.1
2,883,676	+		IAI47_13595	0.57	+0.8
2,883,677	-		IAI47_13595	0.57	-1.7
2,883,713	-		IAI47_13595	0.61	+0.0
2,883,753	-		IAI47_13595	0.65	-0.5
2,883,753	-		IAI47_13595	0.65	-0.8
2,883,800	-		IAI47_13595	0.69	-0.5
2,883,807	+		IAI47_13595	0.70	-1.2
2,883,807	+		IAI47_13595	0.70	-0.2
2,883,808	-		IAI47_13595	0.70	+1.0
2,883,808	-		IAI47_13595	0.70	-1.2
2,883,902	+		IAI47_13595	0.79	+0.0
2,883,902	+		IAI47_13595	0.79	+1.8
2,883,903	-		IAI47_13595	0.79	-0.0
2,883,903	-		IAI47_13595	0.79	-0.8
2,883,903	-		IAI47_13595	0.79	+0.7
2,883,927	+		IAI47_13595	0.81	+0.4
2,883,927	+		IAI47_13595	0.81	+3.4
2,883,927	+		IAI47_13595	0.81	-1.2
2,883,927	+		IAI47_13595	0.81	-0.6
2,883,939	+		IAI47_13595	0.83	-1.0
2,883,939	+		IAI47_13595	0.83	-0.3
2,883,939	+		IAI47_13595	0.83	-0.5
2,883,939	+		IAI47_13595	0.83	-0.4
2,883,940	-		IAI47_13595	0.83	-1.6
2,883,940	-		IAI47_13595	0.83	-2.6
2,883,940	-		IAI47_13595	0.83	-1.0
2,883,940	-		IAI47_13595	0.83	-0.2
2,883,975	+		IAI47_13595	0.86	+0.8
2,883,975	+		IAI47_13595	0.86	-1.0
2,883,975	+		IAI47_13595	0.86	-0.2
2,883,975	+		IAI47_13595	0.86	+0.8
2,883,975	+		IAI47_13595	0.86	+0.4
2,883,975	+		IAI47_13595	0.86	-0.2
2,883,975	+		IAI47_13595	0.86	+0.1
2,883,975	+		IAI47_13595	0.86	-1.0
2,883,975	+		IAI47_13595	0.86	+0.3
2,883,975	+		IAI47_13595	0.86	-0.2
2,883,976	-		IAI47_13595	0.86	+0.1
2,883,976	-		IAI47_13595	0.86	+0.8
2,883,976	-		IAI47_13595	0.86	-0.6
2,883,976	-		IAI47_13595	0.86	-0.6
2,883,976	-		IAI47_13595	0.86	-0.5
2,883,976	-		IAI47_13595	0.86	-0.6
2,883,976	-		IAI47_13595	0.86	-0.8
2,883,977	+		IAI47_13595	0.86	-0.6
2,883,977	+		IAI47_13595	0.86	-1.2
2,883,977	+		IAI47_13595	0.86	+0.4
2,883,977	+		IAI47_13595	0.86	-0.8
2,883,978	-		IAI47_13595	0.86	+0.2
2,883,978	-		IAI47_13595	0.86	+0.6
2,883,978	-		IAI47_13595	0.86	-0.4
2,883,978	-		IAI47_13595	0.86	-0.8
2,884,160	-				-1.0
2,884,181	+				+0.3
2,884,186	+				+0.0
2,884,206	+				+1.8
2,885,020	+				+0.0
2,885,021	-				-1.0
2,885,070	+				-0.1
2,885,071	-				+1.4
2,885,071	-				+0.6
2,885,151	+				+0.6
2,885,152	-				+1.0
2,885,178	+				-0.8
2,885,226	+		IAI47_13605	0.12	-0.6
2,885,227	-		IAI47_13605	0.12	+0.4
2,885,334	+		IAI47_13605	0.22	+0.2
2,885,334	+		IAI47_13605	0.22	-1.0
2,885,335	-		IAI47_13605	0.23	+0.4
2,885,335	-		IAI47_13605	0.23	-0.6
2,885,335	-		IAI47_13605	0.23	+0.2
2,885,335	-		IAI47_13605	0.23	+0.3
2,885,429	+		IAI47_13605	0.31	-0.2
2,885,429	+		IAI47_13605	0.31	+1.8
2,885,460	+		IAI47_13605	0.34	+1.1
2,885,460	+		IAI47_13605	0.34	+0.1
2,885,460	+		IAI47_13605	0.34	-0.0
2,885,460	+		IAI47_13605	0.34	-1.0
2,885,460	+		IAI47_13605	0.34	+0.9
2,885,461	-		IAI47_13605	0.34	+1.0
2,885,507	+		IAI47_13605	0.39	+0.5
2,885,507	+		IAI47_13605	0.39	+0.4
2,885,507	+		IAI47_13605	0.39	-0.5
2,885,507	+		IAI47_13605	0.39	-0.2
2,885,507	+		IAI47_13605	0.39	-0.5
2,885,507	+		IAI47_13605	0.39	-0.2
2,885,507	+		IAI47_13605	0.39	-0.4
2,885,507	+		IAI47_13605	0.39	-0.2
2,885,507	+		IAI47_13605	0.39	+1.0
2,885,507	+		IAI47_13605	0.39	-0.5
2,885,508	-		IAI47_13605	0.39	-0.1
2,885,508	-		IAI47_13605	0.39	-0.1
2,885,508	-		IAI47_13605	0.39	-0.1
2,885,508	-		IAI47_13605	0.39	+1.3
2,885,508	-		IAI47_13605	0.39	-0.2
2,885,508	-		IAI47_13605	0.39	-0.3
2,885,571	+		IAI47_13605	0.45	-0.6
2,885,571	+		IAI47_13605	0.45	-0.2
2,885,571	+		IAI47_13605	0.45	-0.5
2,885,571	+		IAI47_13605	0.45	-0.2
2,885,572	-		IAI47_13605	0.45	-0.6
2,885,572	-		IAI47_13605	0.45	+1.6
2,885,655	+		IAI47_13605	0.53	+0.0
2,885,656	-		IAI47_13605	0.53	-1.6
2,885,696	+		IAI47_13605	0.57	-0.2
2,885,696	+		IAI47_13605	0.57	+0.0
2,885,696	+		IAI47_13605	0.57	+0.7
2,885,696	+		IAI47_13605	0.57	-1.6
2,885,696	+		IAI47_13605	0.57	+0.8
2,885,697	-		IAI47_13605	0.57	+0.3
2,885,697	-		IAI47_13605	0.57	+0.4
2,885,707	-		IAI47_13605	0.58	-0.1
2,885,712	+		IAI47_13605	0.58	-0.6
2,885,737	+		IAI47_13605	0.61	-0.1
2,885,752	-		IAI47_13605	0.62	-2.2
2,885,769	+		IAI47_13605	0.64	+0.1
2,885,770	-		IAI47_13605	0.64	-0.6
2,885,770	-		IAI47_13605	0.64	-0.2
2,885,801	+		IAI47_13605	0.67	+2.9
2,885,802	-		IAI47_13605	0.67	-0.2
2,885,802	-		IAI47_13605	0.67	-0.5
2,885,814	+		IAI47_13605	0.68	-0.8
2,885,814	+		IAI47_13605	0.68	+0.9
2,885,815	-		IAI47_13605	0.68	+1.5
2,885,815	-		IAI47_13605	0.68	+0.8
2,885,815	-		IAI47_13605	0.68	+1.1
2,885,815	-		IAI47_13605	0.68	-1.3
2,885,816	+		IAI47_13605	0.68	+1.1
2,885,816	+		IAI47_13605	0.68	-0.8
2,885,816	+		IAI47_13605	0.68	+0.0
2,885,816	+		IAI47_13605	0.68	-2.2
2,885,816	+		IAI47_13605	0.68	-1.9
2,885,816	+		IAI47_13605	0.68	-0.3
2,885,816	+		IAI47_13605	0.68	-0.2
2,885,817	-		IAI47_13605	0.68	+0.3
2,885,817	-		IAI47_13605	0.68	-0.5
2,885,817	-		IAI47_13605	0.68	-0.5
2,885,817	-		IAI47_13605	0.68	-0.7
2,885,870	+		IAI47_13605	0.73	+1.1
2,885,936	+		IAI47_13605	0.80	+1.4
2,885,937	-		IAI47_13605	0.80	+0.9
2,885,955	+		IAI47_13605	0.81	+1.1
2,885,955	+		IAI47_13605	0.81	-0.7
2,885,955	+		IAI47_13605	0.81	+2.4
2,885,955	+		IAI47_13605	0.81	-0.1
2,885,956	-		IAI47_13605	0.81	-0.2
2,885,956	-		IAI47_13605	0.81	+0.8
2,885,956	-		IAI47_13605	0.81	-0.6
2,885,956	-		IAI47_13605	0.81	-1.6