Strain Fitness in Pantoea sp. MT58 around IAI47_12835

Experiment: Ying_all64 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 1
2,708,038	-				+0.7
2,708,086	+				+2.7
2,708,086	+				-0.0
2,708,087	-				+1.3
2,708,087	-				-0.7
2,708,100	+				+0.1
2,708,100	+				+1.3
2,708,100	+				-2.3
2,708,101	-				+0.2
2,708,101	-				-0.5
2,708,101	-				-0.3
2,708,119	+				+0.3
2,708,119	+				+0.1
2,708,119	+				-0.8
2,708,120	-				-0.5
2,708,120	-				+0.0
2,708,120	-				-0.3
2,708,120	-				-0.3
2,708,142	+				-1.7
2,708,150	+				+0.3
2,708,186	+				-1.1
2,708,186	+				-0.7
2,708,186	+				-0.7
2,708,186	+				+1.3
2,708,186	+				-0.1
2,708,187	-				+0.4
2,708,204	-				-0.9
2,708,231	+				-0.0
2,708,232	-				-0.9
2,708,232	-				+0.1
2,708,232	-				-0.3
2,708,232	-				-0.5
2,708,232	-				+0.2
2,708,232	-				-1.0
2,708,232	-				-0.9
2,708,245	+				+1.5
2,708,245	+				+0.1
2,708,245	+				+1.3
2,708,246	-				-0.0
2,708,312	+		IAI47_12840	0.12	+1.7
2,708,312	+		IAI47_12840	0.12	-0.3
2,708,313	-		IAI47_12840	0.12	-1.3
2,708,313	-		IAI47_12840	0.12	+0.1
2,708,331	+		IAI47_12840	0.12	+0.9
2,708,332	-		IAI47_12840	0.13	+0.5
2,708,342	+		IAI47_12840	0.13	+0.1
2,708,445	+		IAI47_12840	0.18	-0.5
2,708,446	-		IAI47_12840	0.18	+0.1
2,708,462	+		IAI47_12840	0.18	-0.6
2,708,462	+		IAI47_12840	0.18	-0.3
2,708,500	-		IAI47_12840	0.20	+0.7
2,708,541	+		IAI47_12840	0.22	+0.7
2,708,541	+		IAI47_12840	0.22	+0.6
2,708,550	+		IAI47_12840	0.22	-1.3
2,708,551	-		IAI47_12840	0.22	+0.3
2,708,551	-		IAI47_12840	0.22	+0.7
2,708,551	-		IAI47_12840	0.22	+0.6
2,708,551	-		IAI47_12840	0.22	-0.3
2,708,586	+		IAI47_12840	0.24	-0.9
2,708,586	+		IAI47_12840	0.24	-1.3
2,708,586	+		IAI47_12840	0.24	-0.6
2,708,587	-		IAI47_12840	0.24	-0.4
2,708,607	-		IAI47_12840	0.25	+0.9
2,708,607	-		IAI47_12840	0.25	+0.1
2,708,627	+		IAI47_12840	0.26	-0.0
2,708,628	-		IAI47_12840	0.26	+1.1
2,708,642	+		IAI47_12840	0.26	-0.3
2,708,642	+		IAI47_12840	0.26	+0.1
2,708,643	-		IAI47_12840	0.26	+0.7
2,708,643	-		IAI47_12840	0.26	+0.2
2,708,665	-		IAI47_12840	0.27	+0.3
2,708,665	-		IAI47_12840	0.27	+0.1
2,708,671	-		IAI47_12840	0.28	-0.1
2,708,671	-		IAI47_12840	0.28	+0.7
2,708,746	+		IAI47_12840	0.31	-0.3
2,708,746	+		IAI47_12840	0.31	+0.1
2,708,746	+		IAI47_12840	0.31	+0.7
2,708,746	+		IAI47_12840	0.31	-0.6
2,708,746	+		IAI47_12840	0.31	+0.3
2,708,746	+		IAI47_12840	0.31	-0.1
2,708,746	+		IAI47_12840	0.31	-0.3
2,708,746	+		IAI47_12840	0.31	+1.5
2,708,746	+		IAI47_12840	0.31	-0.7
2,708,746	+		IAI47_12840	0.31	-0.3
2,708,746	+		IAI47_12840	0.31	+1.1
2,708,747	-		IAI47_12840	0.31	-0.1
2,708,747	-		IAI47_12840	0.31	-1.4
2,708,747	-		IAI47_12840	0.31	+0.1
2,708,747	-		IAI47_12840	0.31	+1.0
2,708,747	-		IAI47_12840	0.31	-1.3
2,708,747	-		IAI47_12840	0.31	-0.3
2,708,747	-		IAI47_12840	0.31	+1.1
2,708,784	+		IAI47_12840	0.33	+0.4
2,708,784	+		IAI47_12840	0.33	+0.4
2,708,785	-		IAI47_12840	0.33	+0.3
2,708,785	-		IAI47_12840	0.33	-0.6
2,708,807	+		IAI47_12840	0.34	-0.6
2,708,808	-		IAI47_12840	0.34	+0.4
2,708,850	+		IAI47_12840	0.36	+0.3
2,708,851	-		IAI47_12840	0.36	+0.5
2,708,851	-		IAI47_12840	0.36	+0.1
2,708,931	+		IAI47_12840	0.39	+1.1
2,708,936	+		IAI47_12840	0.39	+1.3
2,708,936	+		IAI47_12840	0.39	+0.3
2,708,936	+		IAI47_12840	0.39	+1.0
2,708,936	+		IAI47_12840	0.39	+0.8
2,708,937	-		IAI47_12840	0.39	-0.3
2,708,937	-		IAI47_12840	0.39	-0.5
2,708,937	-		IAI47_12840	0.39	-0.3
2,708,937	-		IAI47_12840	0.39	+0.4
2,708,943	-		IAI47_12840	0.40	-0.4
2,708,986	-		IAI47_12840	0.42	-0.9
2,708,986	-		IAI47_12840	0.42	+0.4