Strain Fitness in Pantoea sp. MT58 around IAI47_12815

Experiment: Ying_all64 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 1
2,702,008	+				+0.4
2,702,008	+				-0.2
2,702,008	+				+0.3
2,702,008	+				-0.3
2,702,008	+				-3.2
2,702,008	+				-0.9
2,702,008	+				+0.9
2,702,008	+				-0.5
2,702,009	-				+0.7
2,702,009	-				+0.9
2,702,009	-				-0.2
2,702,009	-				-1.1
2,702,009	-				-1.0
2,702,009	-				+0.2
2,702,009	-				+0.2
2,702,009	-				+0.2
2,702,062	-				+1.1
2,702,090	+		IAI47_12810	0.11	-0.3
2,702,090	+		IAI47_12810	0.11	+1.3
2,702,091	-		IAI47_12810	0.11	-0.1
2,702,109	+		IAI47_12810	0.13	-0.9
2,702,109	+		IAI47_12810	0.13	-0.1
2,702,110	-		IAI47_12810	0.13	+0.4
2,702,141	+		IAI47_12810	0.17	-0.2
2,702,141	+		IAI47_12810	0.17	-1.1
2,702,142	-		IAI47_12810	0.17	+0.7
2,702,142	-		IAI47_12810	0.17	+1.0
2,702,142	-		IAI47_12810	0.17	-1.0
2,702,152	+		IAI47_12810	0.18	+1.5
2,702,152	+		IAI47_12810	0.18	+0.7
2,702,153	-		IAI47_12810	0.18	+0.7
2,702,195	+		IAI47_12810	0.23	-0.7
2,702,195	+		IAI47_12810	0.23	-1.2
2,702,195	+		IAI47_12810	0.23	-0.6
2,702,196	-		IAI47_12810	0.23	+0.7
2,702,196	-		IAI47_12810	0.23	+0.1
2,702,242	+		IAI47_12810	0.28	+0.1
2,702,243	-		IAI47_12810	0.28	-0.7
2,702,383	-		IAI47_12810	0.44	+0.7
2,702,402	+		IAI47_12810	0.46	+0.1
2,702,402	+		IAI47_12810	0.46	-0.6
2,702,402	+		IAI47_12810	0.46	+2.0
2,702,403	-		IAI47_12810	0.46	+0.4
2,702,403	-		IAI47_12810	0.46	-0.1
2,702,403	-		IAI47_12810	0.46	-0.9
2,702,441	+		IAI47_12810	0.50	-0.3
2,702,441	+		IAI47_12810	0.50	-1.6
2,702,442	-		IAI47_12810	0.51	-0.7
2,702,442	-		IAI47_12810	0.51	+0.5
2,702,499	+		IAI47_12810	0.57	-0.7
2,702,657	+		IAI47_12810	0.75	-0.5
2,702,657	+		IAI47_12810	0.75	-1.3
2,702,658	-		IAI47_12810	0.75	-0.5
2,702,658	-		IAI47_12810	0.75	-1.4
2,702,669	-		IAI47_12810	0.76	-0.9
2,702,763	+		IAI47_12810	0.86	+0.1
2,702,763	+		IAI47_12810	0.86	-0.2
2,702,763	+		IAI47_12810	0.86	-0.9
2,702,763	+		IAI47_12810	0.86	+0.2
2,702,783	+		IAI47_12810	0.89	+0.7
2,702,783	+		IAI47_12810	0.89	-1.6
2,702,783	+		IAI47_12810	0.89	-0.0
2,702,783	+		IAI47_12810	0.89	-0.7
2,702,783	+		IAI47_12810	0.89	-2.3
2,702,783	+		IAI47_12810	0.89	+1.3
2,702,783	+		IAI47_12810	0.89	-1.3
2,702,783	+		IAI47_12810	0.89	+0.2
2,702,784	-		IAI47_12810	0.89	+0.5
2,702,784	-		IAI47_12810	0.89	-1.0
2,702,784	-		IAI47_12810	0.89	-0.6
2,702,784	-		IAI47_12810	0.89	-1.3
2,702,784	-		IAI47_12810	0.89	-2.4
2,702,785	+		IAI47_12810	0.89	-0.1
2,702,785	+		IAI47_12810	0.89	+0.7
2,702,785	+		IAI47_12810	0.89	+1.0
2,702,786	-		IAI47_12810	0.89	+0.7
2,702,792	+		IAI47_12810	0.90	+1.3
2,702,793	-		IAI47_12810	0.90	+2.1
2,702,793	-		IAI47_12810	0.90	-0.2
2,702,871	+				+0.7
2,702,871	+				-0.3
2,702,871	+				+0.1
2,702,872	-				+0.5
2,702,905	+				+0.1
2,702,905	+				+1.1
2,702,906	-				+1.1
2,702,906	-				+0.4
2,702,913	+				-1.4
2,702,936	+				-2.4
2,702,936	+				-0.1
2,703,013	-				-0.3
2,703,013	-				-1.0
2,703,013	-				-0.0
2,703,013	-				+0.4
2,703,965	-				-0.4
2,703,965	-				+0.3
2,703,965	-				-0.3
2,703,965	-				-0.7
2,703,965	-				+0.7
2,703,965	-				+0.7
2,703,969	+				-0.9
2,703,979	+				+0.4
2,703,979	+				-0.7
2,703,993	+				-1.4
2,703,993	+				+1.1
2,703,993	+				+1.3
2,704,064	+				+0.7
2,704,064	+				-0.0
2,704,065	-				-0.4
2,704,143	-				-1.1
2,704,143	-				-0.1
2,704,197	-		IAI47_12825	0.14	-1.0
2,704,226	+		IAI47_12825	0.16	+1.3
2,704,226	+		IAI47_12825	0.16	-0.2
2,704,226	+		IAI47_12825	0.16	+0.3
2,704,226	+		IAI47_12825	0.16	+0.2
2,704,226	+		IAI47_12825	0.16	-0.9
2,704,248	+		IAI47_12825	0.18	+0.5
2,704,248	+		IAI47_12825	0.18	+0.5
2,704,248	+		IAI47_12825	0.18	-0.9
2,704,249	-		IAI47_12825	0.18	-0.6
2,704,249	-		IAI47_12825	0.18	+0.6
2,704,283	-		IAI47_12825	0.21	-0.9
2,704,283	-		IAI47_12825	0.21	-0.4
2,704,310	+		IAI47_12825	0.23	+0.1
2,704,310	+		IAI47_12825	0.23	-0.4
2,704,311	-		IAI47_12825	0.23	-0.3
2,704,311	-		IAI47_12825	0.23	-1.6
2,704,311	-		IAI47_12825	0.23	+0.5
2,704,312	+		IAI47_12825	0.23	-1.3
2,704,312	+		IAI47_12825	0.23	+0.1
2,704,312	+		IAI47_12825	0.23	+0.2
2,704,312	+				+0.7
2,704,312	+		IAI47_12825	0.23	+0.9
2,704,312	+		IAI47_12825	0.23	+0.1
2,704,312	+		IAI47_12825	0.23	+0.4
2,704,312	+		IAI47_12825	0.23	+0.1
2,704,312	+		IAI47_12825	0.23	+0.1
2,704,312	+		IAI47_12825	0.23	+0.1
2,704,312	+		IAI47_12825	0.23	+0.1
2,704,312	+		IAI47_12825	0.23	-0.7
2,704,313	-		IAI47_12825	0.23	-1.2
2,704,313	-		IAI47_12825	0.23	-0.3
2,704,313	-		IAI47_12825	0.23	-1.4
2,704,313	-		IAI47_12825	0.23	+0.5
2,704,313	-		IAI47_12825	0.23	-1.4
2,704,313	-		IAI47_12825	0.23	-0.7
2,704,313	-		IAI47_12825	0.23	-0.7
2,704,327	+		IAI47_12825	0.25	+0.7
2,704,328	-		IAI47_12825	0.25	-0.2
2,704,475	+		IAI47_12825	0.37	+1.0
2,704,475	+		IAI47_12825	0.37	+0.2
2,704,476	-		IAI47_12825	0.37	+0.7
2,704,476	-		IAI47_12825	0.37	-0.4
2,704,476	-		IAI47_12825	0.37	-0.4
2,704,476	-		IAI47_12825	0.37	+0.1
2,704,527	+		IAI47_12825	0.41	+0.4
2,704,550	-		IAI47_12825	0.43	-0.5
2,704,552	+		IAI47_12825	0.43	-0.9
2,704,552	+		IAI47_12825	0.43	-0.8
2,704,553	-		IAI47_12825	0.43	-0.3
2,704,553	-		IAI47_12825	0.43	+1.5
2,704,637	+		IAI47_12825	0.50	+0.7
2,704,637	+		IAI47_12825	0.50	-0.5
2,704,638	-		IAI47_12825	0.50	+0.7
2,704,638	-		IAI47_12825	0.50	-0.7
2,704,638	-		IAI47_12825	0.50	-0.1
2,704,638	-		IAI47_12825	0.50	+0.6
2,704,668	+		IAI47_12825	0.53	+1.0
2,704,668	+		IAI47_12825	0.53	-0.6
2,704,669	-		IAI47_12825	0.53	+0.1
2,704,669	-		IAI47_12825	0.53	+0.4
2,704,669	-		IAI47_12825	0.53	-0.7
2,704,669	-		IAI47_12825	0.53	-0.6
2,704,669	-		IAI47_12825	0.53	+1.1
2,704,687	+		IAI47_12825	0.54	-0.2