Strain Fitness in Pantoea sp. MT58 around IAI47_12095

Experiment: Ying_all64 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 1
2,558,561	-		IAI47_12085	0.25	+0.1
2,558,705	-		IAI47_12085	0.39	-1.2
2,558,705	-		IAI47_12085	0.39	+0.7
2,558,705	-		IAI47_12085	0.39	-1.3
2,558,705	-		IAI47_12085	0.39	-1.3
2,558,705	-		IAI47_12085	0.39	-1.7
2,558,705	-		IAI47_12085	0.39	+0.3
2,558,705	-		IAI47_12085	0.39	+0.4
2,558,707	-		IAI47_12085	0.39	-0.9
2,558,707	-		IAI47_12085	0.39	+0.1
2,558,707	-		IAI47_12085	0.39	-2.7
2,558,707	-		IAI47_12085	0.39	-0.9
2,558,707	-		IAI47_12085	0.39	-2.3
2,558,733	-		IAI47_12085	0.42	+1.5
2,558,736	-		IAI47_12085	0.42	-1.1
2,558,736	-		IAI47_12085	0.42	-0.6
2,558,736	-		IAI47_12085	0.42	-0.6
2,558,736	-		IAI47_12085	0.42	+0.7
2,558,736	-		IAI47_12085	0.42	+0.7
2,558,736	-		IAI47_12085	0.42	-1.6
2,558,736	-		IAI47_12085	0.42	-0.1
2,558,768	-		IAI47_12085	0.45	-1.1
2,558,768	-		IAI47_12085	0.45	-1.5
2,558,786	-		IAI47_12085	0.47	+0.3
2,558,786	-		IAI47_12085	0.47	-0.0
2,558,816	-		IAI47_12085	0.50	+0.4
2,558,816	-		IAI47_12085	0.50	-0.3
2,558,907	-		IAI47_12085	0.59	+0.1
2,558,918	-		IAI47_12085	0.60	-1.3
2,558,918	-		IAI47_12085	0.60	-0.6
2,558,937	-		IAI47_12085	0.61	-0.9
2,558,985	-		IAI47_12085	0.66	-1.6
2,558,997	-		IAI47_12085	0.67	-0.1
2,559,017	-		IAI47_12085	0.69	-0.7
2,559,032	-		IAI47_12085	0.71	-0.4
2,559,365	-				+0.5
2,560,122	-				+0.7
2,560,142	+				-1.0
2,560,143	-				-0.9
2,560,169	+				-0.1
2,560,229	+				-0.3
2,560,229	+				+0.0
2,560,260	-				+0.1
2,560,260	-				+0.7
2,560,260	-				-1.3
2,560,266	+				-0.1
2,560,266	+				-0.8
2,560,266	+				+0.4
2,560,266	+				+0.6
2,560,266	+				-1.5
2,560,266	+				-0.8
2,560,266	+				+0.4
2,560,267	-				+0.5
2,560,267	-				+1.3
2,560,284	+		IAI47_12100	0.13	-0.2
2,560,284	+		IAI47_12100	0.13	-0.9
2,560,284	+		IAI47_12100	0.13	-1.3
2,560,284	+		IAI47_12100	0.13	+1.4
2,560,284	+		IAI47_12100	0.13	-0.0
2,560,284	+		IAI47_12100	0.13	-1.5
2,560,285	-		IAI47_12100	0.13	+1.3
2,560,285	-		IAI47_12100	0.13	-0.0
2,560,285	-		IAI47_12100	0.13	+0.5
2,560,285	-		IAI47_12100	0.13	-1.2
2,560,285	-		IAI47_12100	0.13	+0.5
2,560,346	+		IAI47_12100	0.23	+0.4
2,560,347	-		IAI47_12100	0.23	-0.3
2,560,504	-		IAI47_12100	0.50	-0.3
2,560,512	+		IAI47_12100	0.51	-0.0
2,560,512	+		IAI47_12100	0.51	-0.0
2,560,519	+		IAI47_12100	0.53	-0.3
2,560,519	+		IAI47_12100	0.53	+2.3
2,560,519	+		IAI47_12100	0.53	-0.9
2,560,519	+		IAI47_12100	0.53	+0.4
2,560,520	-		IAI47_12100	0.53	+0.1
2,560,520	-		IAI47_12100	0.53	-1.0
2,560,520	-		IAI47_12100	0.53	+0.1
2,560,520	-		IAI47_12100	0.53	+0.4
2,560,601	+		IAI47_12100	0.66	+1.2
2,560,602	-		IAI47_12100	0.67	-0.9
2,560,624	+		IAI47_12100	0.70	+0.1
2,560,625	-		IAI47_12100	0.71	-2.5
2,560,625	-		IAI47_12100	0.71	+1.2
2,560,665	+		IAI47_12100	0.77	-0.2
2,560,722	+		IAI47_12100	0.87	+0.0
2,560,722	+		IAI47_12100	0.87	+0.5
2,560,722	+		IAI47_12100	0.87	-1.4
2,560,776	+				+0.5
2,560,788	-				-0.3
2,560,798	+				+0.7
2,560,883	+				+2.3
2,560,883	+				-0.8
2,560,883	+				-0.9
2,560,883	+				-1.2
2,560,884	-				+0.5
2,560,884	-				+1.0
2,560,884	-				+0.8
2,560,884	-				+3.7
2,560,987	-		IAI47_12105	0.18	+0.7
2,561,026	+		IAI47_12105	0.22	+1.2
2,561,026	+		IAI47_12105	0.22	+0.1
2,561,026	+		IAI47_12105	0.22	-0.0
2,561,026	+		IAI47_12105	0.22	-2.9
2,561,026	+		IAI47_12105	0.22	-0.6
2,561,026	+		IAI47_12105	0.22	+0.5
2,561,026	+		IAI47_12105	0.22	+1.1
2,561,027	-		IAI47_12105	0.23	+0.3
2,561,027	-		IAI47_12105	0.23	-0.3
2,561,027	-		IAI47_12105	0.23	+0.7