Strain Fitness in Pantoea sp. MT58 around IAI47_11290

Experiment: Ying_all64 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 1
2,386,628	+				+1.5
2,386,628	+				-0.3
2,386,667	-				+0.7
2,386,687	+				-1.3
2,386,688	-				+1.1
2,386,718	+				-0.4
2,386,739	-				-1.7
2,386,801	+				-0.8
2,386,801	+				+1.1
2,386,802	-				-0.4
2,386,827	-				+0.0
2,386,829	+				-0.7
2,386,856	+				-0.4
2,386,856	+				+0.4
2,386,856	+				-0.1
2,386,860	+				+1.0
2,386,860	+				+0.1
2,386,860	+				+1.1
2,386,860	+				-1.8
2,386,861	-				+0.9
2,386,861	-				+0.2
2,386,861	-				+0.0
2,386,861	-				-0.3
2,386,862	+				+0.6
2,386,862	+				+1.1
2,386,862	+				+0.7
2,386,863	-				-1.0
2,386,867	+				+0.1
2,386,867	+				-0.9
2,386,867	+				+0.4
2,386,867	+				+1.0
2,386,867	+				+0.3
2,386,868	-				+0.4
2,386,868	-				-0.5
2,386,868	-				+0.3
2,386,884	+				-0.4
2,386,884	+				+0.6
2,386,884	+				-0.0
2,386,884	+				-1.1
2,386,884	+				-2.0
2,386,884	+				+0.5
2,386,885	-				+0.7
2,386,888	+				-0.3
2,386,888	+				+1.3
2,386,889	-				+3.7
2,386,889	-				+0.3
2,386,975	+		IAI47_11295	0.11	-0.9
2,386,976	-		IAI47_11295	0.11	+0.6
2,386,976	-		IAI47_11295	0.11	+0.7
2,386,976	-		IAI47_11295	0.11	-2.0
2,386,976	-		IAI47_11295	0.11	+1.1
2,386,979	+		IAI47_11295	0.12	-0.9
2,386,999	+		IAI47_11295	0.13	-0.4
2,386,999	+		IAI47_11295	0.13	+0.4
2,386,999	+		IAI47_11295	0.13	-0.1
2,386,999	+		IAI47_11295	0.13	-0.4
2,386,999	+		IAI47_11295	0.13	+0.1
2,387,000	-		IAI47_11295	0.13	-0.1
2,387,000	-		IAI47_11295	0.13	-0.1
2,387,003	+		IAI47_11295	0.14	+0.0
2,387,003	+		IAI47_11295	0.14	+0.4
2,387,003	+		IAI47_11295	0.14	-0.0
2,387,056	+		IAI47_11295	0.18	+0.2
2,387,057	-		IAI47_11295	0.18	-0.2
2,387,057	-		IAI47_11295	0.18	+0.0
2,387,057	-		IAI47_11295	0.18	+0.7
2,387,057	-		IAI47_11295	0.18	+0.1
2,387,057	-		IAI47_11295	0.18	-0.3
2,387,083	+		IAI47_11295	0.21	-0.4
2,387,084	-		IAI47_11295	0.21	-1.7
2,387,084	-		IAI47_11295	0.21	-1.3
2,387,084	-		IAI47_11295	0.21	-0.3
2,387,178	+		IAI47_11295	0.29	-1.6
2,387,178	+		IAI47_11295	0.29	-0.6
2,387,179	-		IAI47_11295	0.29	+0.3
2,387,179	-		IAI47_11295	0.29	+0.1
2,387,179	-		IAI47_11295	0.29	-0.2
2,387,179	-		IAI47_11295	0.29	-0.3
2,387,181	+		IAI47_11295	0.29	-0.4
2,387,181	+		IAI47_11295	0.29	+1.9
2,387,181	+		IAI47_11295	0.29	+0.1
2,387,182	-		IAI47_11295	0.29	-1.3
2,387,182	-		IAI47_11295	0.29	-0.4
2,387,200	+		IAI47_11295	0.31	-0.8
2,387,200	+		IAI47_11295	0.31	-1.1
2,387,200	+		IAI47_11295	0.31	+0.1
2,387,200	+		IAI47_11295	0.31	-0.3
2,387,201	-		IAI47_11295	0.31	+2.5
2,387,214	-		IAI47_11295	0.32	+2.5
2,387,222	+		IAI47_11295	0.33	+1.5
2,387,222	+		IAI47_11295	0.33	+0.1
2,387,223	-		IAI47_11295	0.33	+1.2
2,387,223	-		IAI47_11295	0.33	-0.9
2,387,223	-		IAI47_11295	0.33	+1.1
2,387,223	-		IAI47_11295	0.33	-0.4
2,387,223	-		IAI47_11295	0.33	+1.4
2,387,229	+		IAI47_11295	0.33	-1.1
2,387,229	+		IAI47_11295	0.33	+0.1
2,387,230	-		IAI47_11295	0.33	+0.6
2,387,230	-		IAI47_11295	0.33	+0.1
2,387,230	-		IAI47_11295	0.33	+0.1
2,387,231	+		IAI47_11295	0.34	-1.2
2,387,243	+		IAI47_11295	0.35	-1.1
2,387,243	+		IAI47_11295	0.35	-0.1
2,387,243	+		IAI47_11295	0.35	-0.8
2,387,244	-		IAI47_11295	0.35	+0.2
2,387,244	-		IAI47_11295	0.35	-0.6
2,387,366	+		IAI47_11295	0.45	+1.3
2,387,406	+		IAI47_11295	0.49	+0.5
2,387,407	-		IAI47_11295	0.49	-0.6
2,387,407	-		IAI47_11295	0.49	-0.5
2,387,450	+		IAI47_11295	0.53	-0.7
2,387,450	+		IAI47_11295	0.53	-0.3
2,387,450	+		IAI47_11295	0.53	-0.3
2,387,450	+		IAI47_11295	0.53	+0.6
2,387,451	-		IAI47_11295	0.53	-1.3
2,387,451	-		IAI47_11295	0.53	-0.0
2,387,546	-		IAI47_11295	0.61	+1.7
2,387,546	-		IAI47_11295	0.61	+0.9
2,387,546	-		IAI47_11295	0.61	-0.6
2,387,549	+		IAI47_11295	0.61	-0.0
2,387,598	+		IAI47_11295	0.65	-0.1
2,387,598	+		IAI47_11295	0.65	-0.1
2,387,598	+		IAI47_11295	0.65	-0.9
2,387,598	+		IAI47_11295	0.65	-0.8
2,387,598	+		IAI47_11295	0.65	-0.3
2,387,599	-		IAI47_11295	0.65	-0.1
2,387,599	-		IAI47_11295	0.65	+0.5
2,387,599	-		IAI47_11295	0.65	-0.3
2,387,599	-		IAI47_11295	0.65	-0.7
2,387,599	-		IAI47_11295	0.65	+0.3
2,387,599	-		IAI47_11295	0.65	+0.1
2,387,599	-		IAI47_11295	0.65	+1.0
2,387,599	-		IAI47_11295	0.65	-1.7
2,387,600	+		IAI47_11295	0.66	+0.8
2,387,600	+		IAI47_11295	0.66	+0.3
2,387,601	-		IAI47_11295	0.66	-1.0
2,387,601	-		IAI47_11295	0.66	+0.4
2,387,601	-		IAI47_11295	0.66	-0.6