Strain Fitness in Pantoea sp. MT58 around IAI47_11250

Experiment: Ying_all64 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 1
2,377,583	+		IAI47_11245	0.19	+0.5
2,377,583	+		IAI47_11245	0.19	+0.1
2,377,685	-		IAI47_11245	0.28	-0.3
2,377,753	+		IAI47_11245	0.34	+0.4
2,377,753	+		IAI47_11245	0.34	+0.2
2,377,754	-		IAI47_11245	0.34	+0.1
2,377,754	-		IAI47_11245	0.34	-0.4
2,377,769	+		IAI47_11245	0.36	-0.2
2,377,796	+		IAI47_11245	0.38	-0.6
2,377,807	+		IAI47_11245	0.39	-0.6
2,377,807	+		IAI47_11245	0.39	-1.0
2,377,808	-		IAI47_11245	0.39	-0.4
2,377,837	-		IAI47_11245	0.42	-0.4
2,377,913	+		IAI47_11245	0.49	-1.3
2,377,914	-		IAI47_11245	0.49	-0.2
2,377,914	-		IAI47_11245	0.49	-0.7
2,377,965	-		IAI47_11245	0.54	-0.3
2,378,008	+		IAI47_11245	0.58	+0.1
2,378,009	-		IAI47_11245	0.58	+0.6
2,378,009	-		IAI47_11245	0.58	-0.3
2,378,009	-		IAI47_11245	0.58	-0.5
2,378,009	-		IAI47_11245	0.58	-1.4
2,378,041	+		IAI47_11245	0.61	+0.5
2,378,041	+		IAI47_11245	0.61	+0.7
2,378,041	+		IAI47_11245	0.61	+0.6
2,378,042	-		IAI47_11245	0.61	-1.1
2,378,042	-		IAI47_11245	0.61	-0.2
2,378,098	+		IAI47_11245	0.66	-0.0
2,378,098	+		IAI47_11245	0.66	+0.3
2,378,168	-		IAI47_11245	0.72	-0.9
2,378,197	+		IAI47_11245	0.75	+0.1
2,378,197	+		IAI47_11245	0.75	+0.5
2,378,197	+		IAI47_11245	0.75	-0.0
2,378,197	+		IAI47_11245	0.75	+0.1
2,378,197	+		IAI47_11245	0.75	-1.0
2,378,197	+		IAI47_11245	0.75	-1.1
2,378,197	+		IAI47_11245	0.75	+0.4
2,378,198	-		IAI47_11245	0.75	+0.2
2,378,198	-		IAI47_11245	0.75	+0.7
2,378,198	-		IAI47_11245	0.75	+0.1
2,378,220	+		IAI47_11245	0.77	+0.4
2,378,263	+		IAI47_11245	0.81	+0.7
2,378,263	+		IAI47_11245	0.81	-0.3
2,378,263	+		IAI47_11245	0.81	-0.6
2,378,263	+		IAI47_11245	0.81	-0.0
2,378,263	+		IAI47_11245	0.81	-0.7
2,378,264	-		IAI47_11245	0.81	+0.3
2,378,264	-		IAI47_11245	0.81	-0.9
2,378,294	-		IAI47_11245	0.84	+0.2
2,378,294	-		IAI47_11245	0.84	+0.4
2,378,323	-		IAI47_11245	0.86	+0.2
2,378,353	+		IAI47_11245	0.89	+0.6
2,378,353	+		IAI47_11245	0.89	+0.0
2,378,353	+		IAI47_11245	0.89	-0.0
2,378,354	-		IAI47_11245	0.89	+0.7
2,378,354	-		IAI47_11245	0.89	+0.4
2,378,409	+				-1.6
2,378,409	+				+0.9
2,378,409	+				+0.7
2,378,409	+				-0.2
2,378,409	+				+0.1
2,378,409	+				-0.0
2,378,410	-				+0.5
2,378,410	-				+0.4
2,378,410	-				-0.3
2,378,441	-				-2.1
2,378,441	-				+1.7
2,378,448	-				+0.6
2,378,468	+				-0.1
2,378,505	+				-0.6
2,378,506	-				-0.0
2,378,532	+				+0.4
2,379,413	-				+0.3
2,380,221	-				-0.3
2,380,243	-				-1.2
2,380,243	-				+0.0
2,380,258	-				+1.4
2,380,258	-				+1.0
2,380,258	-				+1.0
2,380,359	-		IAI47_11260	0.35	+0.4
2,380,359	-		IAI47_11260	0.35	+0.4