Strain Fitness in Pantoea sp. MT58 around IAI47_08425

Experiment: Ying_all64 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 1
1,783,131	-				-2.2
1,783,171	+		IAI47_08420	0.14	-0.1
1,783,273	+		IAI47_08420	0.27	+0.2
1,783,304	+		IAI47_08420	0.30	+0.8
1,783,324	+		IAI47_08420	0.33	+0.8
1,783,324	+		IAI47_08420	0.33	-1.6
1,783,324	+		IAI47_08420	0.33	+0.2
1,783,495	-		IAI47_08420	0.54	+0.8
1,783,517	-		IAI47_08420	0.56	-0.4
1,783,581	+		IAI47_08420	0.64	+0.3
1,783,582	-		IAI47_08420	0.64	-0.5
1,783,687	+		IAI47_08420	0.77	+1.0
1,783,758	+		IAI47_08420	0.86	-0.2
1,783,759	-		IAI47_08420	0.86	-0.2
1,783,778	+		IAI47_08420	0.88	+0.2
1,783,778	+		IAI47_08420	0.88	-0.2
1,783,779	-		IAI47_08420	0.88	+0.3
1,783,779	-		IAI47_08420	0.88	-0.6
1,783,792	-		IAI47_08420	0.90	-0.1
1,783,792	-		IAI47_08420	0.90	+0.1
1,783,792	-		IAI47_08420	0.90	+0.1
1,783,792	-		IAI47_08420	0.90	-1.6
1,783,792	-		IAI47_08420	0.90	+0.2
1,783,800	+				-0.3
1,783,801	-				-0.4
1,783,801	-				+0.1
1,783,801	-				+1.6
1,783,820	-				+0.2
1,783,820	-				+0.2
1,783,864	+				+0.3
1,783,864	+				+1.1
1,783,897	+				+0.8
1,783,897	+				+0.5
1,783,897	+				+0.4
1,783,910	+				+0.0
1,783,910	+				+0.6
1,783,917	+				-1.0
1,783,917	+				+1.3
1,783,917	+				-0.6
1,783,917	+				-1.1
1,783,917	+				-0.0
1,783,917	+				-0.1
1,783,917	+				-0.7
1,783,917	+				-0.8
1,783,917	+				+0.9
1,783,918	-				-0.7
1,783,918	-				+0.2
1,783,918	-				+2.3
1,783,918	-				+1.0
1,783,918	-				+0.2
1,783,918	-				-0.6
1,783,918	-				+0.4
1,785,864	+				-0.6
1,785,864	+				+0.3
1,785,865	-				-0.7
1,785,872	+				-0.2
1,785,874	+				+0.5
1,785,874	+				+1.0
1,785,875	-				+0.4
1,785,901	+				-1.2
1,785,901	+				-0.2
1,785,902	-				+1.1
1,786,127	+		IAI47_08430	0.60	-0.1
1,786,127	+		IAI47_08430	0.60	-1.6
1,786,128	-		IAI47_08430	0.61	-0.2
1,786,147	+		IAI47_08430	0.65	-1.0
1,786,148	-		IAI47_08430	0.65	+0.3
1,786,251	+		IAI47_08430	0.89	+0.3
1,786,252	-		IAI47_08430	0.89	-0.7
1,786,252	-		IAI47_08430	0.89	-0.2
1,786,291	+				-0.2
1,786,292	-				-0.5
1,786,331	+				-0.3
1,786,332	-				+0.3
1,786,336	+				+0.2
1,786,337	-				-0.8
1,786,337	-				+0.0
1,786,362	-				-0.7
1,786,378	+				-0.8
1,786,378	+				+0.9
1,786,378	+				+0.3
1,786,378	+				-0.4
1,786,378	+				-0.7
1,786,378	+				-1.4
1,786,378	+				+0.3
1,786,378	+				-0.3
1,786,378	+				-0.3
1,786,379	-				-0.8
1,786,379	-				-0.2
1,786,380	+				+0.7
1,786,380	+				+0.4
1,786,380	+				-0.1
1,786,380	+				-0.2
1,786,380	+				+0.2
1,786,380	+				+0.2
1,786,380	+				+0.3
1,786,380	+				+0.8
1,786,381	-				-0.2
1,786,381	-				-0.6
1,786,402	+				+1.2
1,786,402	+				+0.2
1,786,419	+				+1.8
1,786,444	+				+0.8
1,786,444	+				-0.2
1,786,444	+				+1.1
1,786,444	+				-0.7
1,786,444	+				+0.9
1,786,444	+				+0.2
1,786,444	+				-1.1
1,786,445	-				+0.5
1,786,445	-				+2.1
1,786,452	+				-0.2
1,786,452	+				+0.6
1,786,452	+				-0.9
1,786,453	-				+0.3
1,786,501	+				-0.4
1,786,512	+				-0.7
1,786,512	+				+0.8
1,786,512	+				+0.8
1,786,512	+				+0.9
1,786,513	-				-0.7
1,786,560	+				+0.7
1,786,597	+				-1.1
1,786,597	+				-0.8
1,786,597	+				-0.8
1,786,597	+				+0.2
1,786,597	+				+1.8
1,786,639	+				-0.7
1,786,639	+				-2.2
1,786,639	+				-0.2
1,786,841	+		IAI47_08435	0.35	+1.1
1,786,841	+		IAI47_08435	0.35	-0.2