Strain Fitness in Pantoea sp. MT58 around IAI47_06310

Experiment: Ying_all64 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 1
1,281,552	+		IAI47_06305	0.15	-0.9
1,281,552	+		IAI47_06305	0.15	-0.3
1,281,552	+		IAI47_06305	0.15	-0.8
1,281,553	-		IAI47_06305	0.15	-0.0
1,281,570	+		IAI47_06305	0.17	+0.2
1,281,570	+		IAI47_06305	0.17	-0.2
1,281,571	-		IAI47_06305	0.17	-1.6
1,281,571	-		IAI47_06305	0.17	-1.2
1,281,576	+		IAI47_06305	0.18	+0.7
1,281,576	+		IAI47_06305	0.18	-0.4
1,281,576	+		IAI47_06305	0.18	-0.4
1,281,576	+		IAI47_06305	0.18	-0.5
1,281,577	-		IAI47_06305	0.18	-1.5
1,281,577	-		IAI47_06305	0.18	+0.5
1,281,594	+		IAI47_06305	0.20	-0.6
1,281,628	-		IAI47_06305	0.23	+0.9
1,281,628	-		IAI47_06305	0.23	-0.6
1,281,638	+		IAI47_06305	0.24	+1.0
1,281,639	-		IAI47_06305	0.25	-0.5
1,281,694	-		IAI47_06305	0.31	-0.1
1,281,694	-		IAI47_06305	0.31	+0.6
1,281,694	-		IAI47_06305	0.31	-0.2
1,281,694	-		IAI47_06305	0.31	-1.3
1,281,717	+		IAI47_06305	0.33	-0.6
1,281,717	+		IAI47_06305	0.33	+0.2
1,281,717	+		IAI47_06305	0.33	-0.5
1,281,718	-		IAI47_06305	0.33	+0.4
1,281,718	-		IAI47_06305	0.33	-0.3
1,281,734	+		IAI47_06305	0.35	-0.9
1,281,734	+		IAI47_06305	0.35	+1.3
1,281,734	+		IAI47_06305	0.35	+0.0
1,281,734	+		IAI47_06305	0.35	-0.9
1,281,735	-		IAI47_06305	0.35	-0.3
1,281,735	-		IAI47_06305	0.35	-0.8
1,281,735	-		IAI47_06305	0.35	+0.1
1,281,735	-		IAI47_06305	0.35	-1.2
1,281,735	-		IAI47_06305	0.35	+0.3
1,281,735	-		IAI47_06305	0.35	+0.7
1,281,735	-		IAI47_06305	0.35	-0.6
1,281,735	-		IAI47_06305	0.35	+1.4
1,281,741	+		IAI47_06305	0.36	-1.3
1,281,741	+		IAI47_06305	0.36	+0.1
1,281,742	-		IAI47_06305	0.36	-1.5
1,281,742	-		IAI47_06305	0.36	-0.4
1,281,774	+		IAI47_06305	0.40	-0.9
1,281,774	+		IAI47_06305	0.40	-0.3
1,281,774	+		IAI47_06305	0.40	-0.2
1,281,775	-		IAI47_06305	0.40	-1.4
1,281,775	-		IAI47_06305	0.40	-1.0
1,281,775	-		IAI47_06305	0.40	+0.8
1,281,821	-		IAI47_06305	0.45	+0.1
1,281,991	+		IAI47_06305	0.64	+0.5
1,281,991	+		IAI47_06305	0.64	-1.1
1,281,991	+		IAI47_06305	0.64	+0.7
1,281,992	-		IAI47_06305	0.64	-1.9
1,281,994	+		IAI47_06305	0.64	-1.1
1,281,994	+		IAI47_06305	0.64	+0.4
1,281,994	+		IAI47_06305	0.64	-0.7
1,281,995	-		IAI47_06305	0.64	-1.5
1,281,995	-		IAI47_06305	0.64	-0.1
1,282,009	-		IAI47_06305	0.66	+0.7
1,282,046	-		IAI47_06305	0.70	+0.9
1,282,125	+		IAI47_06305	0.79	-0.4
1,282,125	+		IAI47_06305	0.79	+0.7
1,282,126	-		IAI47_06305	0.79	+0.4
1,282,229	-				-0.5
1,282,260	+				-2.1
1,282,260	+				+0.6
1,282,260	+				-0.7
1,282,260	+				-0.4
1,282,260	+				-1.8
1,282,261	-				-0.0
1,282,261	-				+0.0
1,282,261	-				-0.1
1,282,261	-				-1.9
1,282,261	-				+0.7
1,282,261	-				+0.2
1,282,261	-				-0.6
1,282,261	-				-2.1
1,282,261	-				-0.5
1,282,302	+				-0.8
1,282,305	+				+1.5
1,282,305	+				-2.0
1,282,305	+				+0.2
1,282,306	-				-0.9
1,282,306	-				-0.6
1,282,344	-				+1.0
1,282,344	-				-1.0
1,282,344	-				+1.0
1,282,361	+				-0.1
1,282,361	+				-0.6
1,282,361	+				+0.1
1,282,361	+				-0.3
1,282,361	+				-0.3
1,282,361	+				+1.7
1,282,361	+				-0.6
1,282,361	+				+0.2
1,282,362	-				+1.4
1,282,362	-				-1.3
1,282,362	-				+0.7
1,282,362	-				-0.9
1,282,362	-				+0.4
1,282,380	+				+0.4
1,282,380	+				+1.0
1,282,380	+				+0.1
1,282,380	+				+1.1
1,282,380	+				-0.8
1,282,380	+				+0.4
1,282,380	+				-0.3
1,282,380	+				+0.6
1,282,381	-				+0.3
1,282,381	-				-0.7
1,282,381	-				-1.1
1,282,381	-				+0.1
1,282,381	-				+0.4
1,282,382	+				+1.1
1,282,383	-				+0.7
1,282,383	-				-0.8
1,282,506	+				+1.1
1,282,506	+				+0.6
1,282,506	+				-0.8
1,282,507	-				-0.1
1,282,551	+				+1.1
1,282,552	-				-1.5
1,282,552	-				-0.9
1,282,566	+		IAI47_06310	0.10	+2.3
1,282,566	+		IAI47_06310	0.10	-0.3
1,282,566	+		IAI47_06310	0.10	-2.3
1,282,566	+		IAI47_06310	0.10	-1.6
1,282,566	+		IAI47_06310	0.10	-0.3
1,282,566	+		IAI47_06310	0.10	+0.9
1,282,635	+		IAI47_06310	0.21	+0.4
1,282,635	+		IAI47_06310	0.21	+0.3
1,282,635	+		IAI47_06310	0.21	+0.8
1,282,647	+		IAI47_06310	0.23	+0.1
1,282,648	-		IAI47_06310	0.23	-0.3
1,282,648	-		IAI47_06310	0.23	+0.2
1,282,706	-		IAI47_06310	0.32	+1.1
1,282,732	-		IAI47_06310	0.36	-1.3
1,282,774	-		IAI47_06310	0.43	+0.3
1,283,003	+		IAI47_06310	0.78	+0.2
1,283,004	-		IAI47_06310	0.79	+0.3
1,283,035	+		IAI47_06310	0.83	-0.5
1,283,036	-		IAI47_06310	0.83	-0.6
1,283,036	-		IAI47_06310	0.83	+0.4
1,283,036	-		IAI47_06310	0.83	+0.4
1,283,065	+		IAI47_06310	0.88	-0.0
1,283,065	+		IAI47_06310	0.88	+1.1
1,283,073	+		IAI47_06310	0.89	-0.9
1,283,073	+		IAI47_06310	0.89	+0.3
1,283,073	+		IAI47_06310	0.89	-0.9
1,283,073	+		IAI47_06310	0.89	-0.9
1,283,073	+		IAI47_06310	0.89	+0.6
1,283,073	+		IAI47_06310	0.89	+0.0
1,283,073	+		IAI47_06310	0.89	-1.3
1,283,074	-		IAI47_06310	0.89	+0.7
1,283,074	-		IAI47_06310	0.89	+0.1
1,283,074	-		IAI47_06310	0.89	+0.4
1,283,074	-		IAI47_06310	0.89	+0.2
1,283,104	+				+0.1
1,283,105	-				+1.7
1,283,105	-				+0.3
1,283,105	-				+0.2
1,283,139	+				+0.1
1,283,167	+				-0.1
1,283,167	+				-0.2
1,283,168	-				-2.1
1,283,168	-				-0.4
1,283,175	+				-0.2
1,283,175	+				+0.4
1,283,175	+				+0.4
1,283,175	+				+0.2
1,283,175	+				+0.7
1,283,176	-				-1.1
1,283,180	+				+1.0
1,283,180	+				+0.4
1,283,181	-				+1.1
1,283,190	-				-1.4
1,283,195	+				+0.4
1,283,196	-				+0.4
1,283,225	+				-1.8
1,283,226	-				-0.5
1,283,291	+				+0.7
1,283,373	+		IAI47_06315	0.23	-1.4
1,283,373	+		IAI47_06315	0.23	-0.7
1,283,373	+		IAI47_06315	0.23	-0.2
1,283,373	+		IAI47_06315	0.23	-0.3
1,283,373	+		IAI47_06315	0.23	-0.6
1,283,373	+		IAI47_06315	0.23	-1.9
1,283,373	+		IAI47_06315	0.23	+0.1
1,283,373	+		IAI47_06315	0.23	+2.5
1,283,373	+		IAI47_06315	0.23	-0.1
1,283,373	+		IAI47_06315	0.23	-0.9
1,283,374	-		IAI47_06315	0.24	+0.9
1,283,374	-		IAI47_06315	0.24	+0.9
1,283,374	-		IAI47_06315	0.24	+0.2
1,283,374	-		IAI47_06315	0.24	+0.2
1,283,374	-		IAI47_06315	0.24	-1.9
1,283,374	-		IAI47_06315	0.24	+0.7
1,283,374	-		IAI47_06315	0.24	-1.3
1,283,374	-		IAI47_06315	0.24	+1.1
1,283,374	-		IAI47_06315	0.24	+0.2
1,283,374	-		IAI47_06315	0.24	-0.0
1,283,375	+		IAI47_06315	0.24	+0.7
1,283,375	+		IAI47_06315	0.24	+0.7
1,283,375	+		IAI47_06315	0.24	-0.2
1,283,375	+		IAI47_06315	0.24	+0.7
1,283,393	+		IAI47_06315	0.27	+1.0
1,283,400	-		IAI47_06315	0.29	-0.6
1,283,411	-		IAI47_06315	0.31	-0.4
1,283,428	+		IAI47_06315	0.34	+0.9
1,283,492	+		IAI47_06315	0.46	-1.6
1,283,492	+		IAI47_06315	0.46	-0.3
1,283,492	+		IAI47_06315	0.46	-0.9
1,283,492	+		IAI47_06315	0.46	-1.7
1,283,492	+		IAI47_06315	0.46	+0.6
1,283,492	+		IAI47_06315	0.46	+0.3
1,283,493	-		IAI47_06315	0.46	+1.3
1,283,493	-		IAI47_06315	0.46	-0.1
1,283,493	-		IAI47_06315	0.46	-0.1
1,283,493	-		IAI47_06315	0.46	-0.3
1,283,530	+		IAI47_06315	0.53	+0.3
1,283,530	+		IAI47_06315	0.53	-1.1
1,283,530	+		IAI47_06315	0.53	-1.2
1,283,531	-		IAI47_06315	0.54	+1.2
1,283,531	-		IAI47_06315	0.54	-0.2
1,283,571	+		IAI47_06315	0.61	-0.1
1,283,666	+		IAI47_06315	0.79	-0.5
1,283,666	+		IAI47_06315	0.79	+0.7
1,283,666	+		IAI47_06315	0.79	-0.1
1,283,666	+		IAI47_06315	0.79	-0.2
1,283,667	-		IAI47_06315	0.79	-1.8
1,283,667	-		IAI47_06315	0.79	-0.5
1,283,667	-		IAI47_06315	0.79	+0.0
1,283,667	-		IAI47_06315	0.79	-1.1
1,283,712	-		IAI47_06315	0.88	+0.5
1,283,790	+				+1.0
1,283,790	+				-0.2
1,283,811	-				-0.7
1,283,811	-				-1.1
1,283,875	+				+0.7
1,283,886	+				+1.3
1,283,886	+				+0.2
1,283,886	+				-0.8
1,283,887	-				-0.8
1,283,911	+				+0.7
1,283,929	+				-0.3
1,283,930	-				-1.6
1,283,930	-				+0.7
1,283,931	+				-0.0
1,283,931	+				+0.5
1,283,932	-				-1.2
1,283,932	-				-0.1
1,283,932	-				-2.5
1,283,981	-				-0.5
1,283,981	-				-0.4
1,283,986	+				-0.6
1,284,042	+				+1.7
1,284,043	-				-0.1
1,284,043	-				-1.1
1,284,076	+				-0.9
1,284,077	-				-0.7