Strain Fitness in Pantoea sp. MT58 around IAI47_05505

Experiment: Ying_all64 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 1
1,158,527	+				-0.9
1,158,527	+				-1.2
1,158,528	-				+1.2
1,158,536	+				-0.0
1,158,536	+				+1.4
1,158,536	+				-0.8
1,158,537	-				+0.4
1,158,537	-				+1.9
1,158,537	-				-0.7
1,158,537	-				-0.3
1,158,537	-				-0.9
1,158,678	+				-0.5
1,158,745	+				+1.1
1,158,745	+				+0.2
1,158,855	-				+0.2
1,158,855	-				-0.6
1,158,986	-		IAI47_05490	0.55	+0.0
1,158,986	-		IAI47_05490	0.55	-1.3
1,158,986	-		IAI47_05490	0.55	-0.6
1,158,986	-		IAI47_05490	0.55	-0.3
1,158,986	-		IAI47_05490	0.55	-0.7
1,158,986	-		IAI47_05490	0.55	+1.1
1,158,986	-		IAI47_05490	0.55	-0.1
1,158,986	-		IAI47_05490	0.55	+0.5
1,158,986	-		IAI47_05490	0.55	-1.0
1,158,986	-		IAI47_05490	0.55	-0.9
1,158,986	-		IAI47_05490	0.55	+0.5
1,158,986	-		IAI47_05490	0.55	-2.0
1,159,000	-		IAI47_05490	0.74	+0.8
1,159,000	-		IAI47_05490	0.74	-2.1
1,159,012	-				-0.4
1,159,012	-				+1.0
1,159,012	-				-0.1
1,159,012	-				+0.4
1,159,012	-				+0.3
1,159,012	-				-1.8
1,159,012	-				-0.3
1,159,012	-				-1.5
1,159,012	-				-0.7
1,159,027	-				-0.5
1,159,027	-				-1.5
1,159,027	-				+1.1
1,159,027	-				-2.6
1,159,035	-				+0.3
1,159,035	-				+0.4
1,159,035	-				-0.3
1,159,035	-				-0.2
1,159,043	-				+0.4
1,159,043	-				-0.6
1,159,055	-				-0.2
1,159,055	-				-0.4
1,159,055	-				-0.3
1,159,134	-				-0.5
1,159,134	-				+0.3
1,159,142	-				-0.1
1,159,142	-				-1.2
1,159,142	-				-1.7
1,159,142	-				-1.6
1,159,142	-				+1.0
1,159,142	-				+0.6
1,159,168	-				+0.7
1,159,168	-				-1.0
1,159,168	-				+1.7
1,159,168	-				+0.1
1,159,168	-				+0.7
1,159,308	+				-1.7
1,159,308	+				-0.5
1,159,308	+				-0.4
1,159,309	-				+1.0
1,159,309	-				-0.9
1,159,309	-				-1.4
1,159,332	-				+1.2
1,159,332	-				+0.4
1,159,369	+				+0.7
1,159,369	+				+0.7
1,159,439	+				+1.9
1,159,439	+				-0.3
1,159,439	+				-1.1
1,159,444	+				-0.3
1,159,444	+				-1.5
1,159,444	+				-0.2
1,159,444	+				-0.9
1,159,444	+				+0.6
1,159,444	+				-0.9
1,159,506	+				-0.1
1,159,506	+				+0.2
1,159,506	+				+0.7
1,159,506	+				-0.0
1,159,506	+				-1.9
1,159,506	+				+0.2
1,160,933	+				+0.1
1,160,933	+				-0.3
1,160,933	+				-1.1
1,160,934	-				-0.9
1,160,934	-				+2.5
1,160,972	+				-0.3
1,160,972	+				-0.3
1,160,973	-				+0.8
1,161,009	+		IAI47_05510	0.11	-3.7
1,161,009	+		IAI47_05510	0.11	-2.0
1,161,022	+		IAI47_05510	0.14	-1.8
1,161,022	+		IAI47_05510	0.14	-1.9
1,161,023	-		IAI47_05510	0.15	-1.9
1,161,028	+		IAI47_05510	0.16	-1.9
1,161,029	-		IAI47_05510	0.16	-2.9
1,161,079	+		IAI47_05510	0.31	-2.6
1,161,079	+		IAI47_05510	0.31	-2.9
1,161,085	+		IAI47_05510	0.32	-1.3
1,161,094	+		IAI47_05510	0.35	-1.3
1,161,106	+		IAI47_05510	0.38	-2.0
1,161,107	-		IAI47_05510	0.38	-1.3
1,161,116	+		IAI47_05510	0.41	-3.2
1,161,116	+		IAI47_05510	0.41	-1.6
1,161,116	+		IAI47_05510	0.41	-3.6
1,161,116	+		IAI47_05510	0.41	-1.6
1,161,117	-		IAI47_05510	0.41	-2.2
1,161,117	-		IAI47_05510	0.41	-3.8
1,161,117	-		IAI47_05510	0.41	-0.3
1,161,117	-		IAI47_05510	0.41	-2.4
1,161,136	-		IAI47_05510	0.47	-2.4
1,161,136	-		IAI47_05510	0.47	-1.1
1,161,136	-		IAI47_05510	0.47	+0.3
1,161,156	+		IAI47_05510	0.52	-3.1
1,161,156	+		IAI47_05510	0.52	-2.1
1,161,157	-		IAI47_05510	0.53	-1.3
1,161,180	+		IAI47_05510	0.59	-1.9
1,161,180	+		IAI47_05510	0.59	-2.3
1,161,180	+		IAI47_05510	0.59	+0.4
1,161,181	-		IAI47_05510	0.59	-0.3
1,161,186	+		IAI47_05510	0.61	-3.3
1,161,186	+		IAI47_05510	0.61	-1.3
1,161,186	+		IAI47_05510	0.61	-1.9
1,161,186	+		IAI47_05510	0.61	-1.4
1,161,186	+		IAI47_05510	0.61	-2.1
1,161,186	+		IAI47_05510	0.61	-1.3
1,161,186	+		IAI47_05510	0.61	-1.3
1,161,186	+		IAI47_05510	0.61	-2.1
1,161,187	-		IAI47_05510	0.61	-3.5
1,161,187	-		IAI47_05510	0.61	-3.0
1,161,187	-		IAI47_05510	0.61	-2.6
1,161,187	-		IAI47_05510	0.61	-1.9
1,161,187	-		IAI47_05510	0.61	-2.0
1,161,187	-		IAI47_05510	0.61	-2.5
1,161,187	-		IAI47_05510	0.61	-0.8
1,161,187	-		IAI47_05510	0.61	-2.5
1,161,187	-		IAI47_05510	0.61	-1.6
1,161,187	-		IAI47_05510	0.61	-1.9
1,161,187	-		IAI47_05510	0.61	-2.4
1,161,255	+		IAI47_05510	0.80	-2.3
1,161,255	+		IAI47_05510	0.80	-2.8
1,161,255	+		IAI47_05510	0.80	-0.9
1,161,256	-		IAI47_05510	0.81	-2.6
1,161,256	-		IAI47_05510	0.81	-0.9
1,161,256	-		IAI47_05510	0.81	-1.0
1,161,276	-		IAI47_05510	0.86	-2.4
1,161,306	+				-2.9
1,161,339	+				-1.2
1,161,339	+				-1.6
1,161,339	+				-4.4
1,161,340	-				+1.0
1,161,340	-				-2.1
1,161,340	-				-2.1
1,161,343	+				-1.9
1,161,343	+				-0.7
1,161,343	+				-1.9
1,161,343	+				-2.5
1,161,343	+				-0.9
1,161,344	-				-3.9
1,161,344	-				-1.5
1,161,344	-				-1.4
1,161,344	-				-2.5
1,161,348	+				+1.7
1,161,348	+				-2.1
1,161,354	+				-2.8
1,161,354	+				-2.1
1,161,354	+				-3.6
1,161,354	+				-1.3
1,161,354	+				+0.7
1,161,354	+				-3.9
1,161,355	-				-1.4
1,161,355	-				-1.9
1,161,355	-				-1.6
1,161,355	-				-2.0
1,161,358	+				-3.3
1,161,358	+				-2.6
1,161,358	+				-4.1
1,161,358	+				-1.2
1,161,358	+				-3.4
1,161,358	+				-2.6
1,161,358	+				-3.6
1,161,358	+				-2.1
1,161,358	+				-5.5
1,161,358	+				-1.5
1,161,358	+				-1.6
1,161,358	+				-1.7
1,161,359	-				-0.5
1,161,359	-				-1.8
1,161,359	-				-2.8
1,161,359	-				-1.9
1,161,359	-				-0.9
1,161,359	-				-2.1
1,161,359	-				-2.5
1,161,359	-				-3.0
1,161,359	-				-3.4
1,161,359	-				-1.6
1,161,359	-				-2.6
1,161,359	-				-2.0
1,161,359	-				-2.5
1,161,361	+				-1.3
1,161,361	+				-1.5
1,161,361	+				-0.3
1,161,361	+				+0.1
1,161,361	+				-1.9
1,161,361	+				-0.9
1,161,362	-				-2.2
1,161,362	-				-2.7
1,161,362	-				-1.6
1,161,362	-				-2.3
1,161,362	-				-0.7
1,161,362	-				-1.6
1,161,362	-				-2.3
1,161,362	-				-3.5
1,161,386	+				-0.1
1,161,386	+				+0.2
1,161,386	+				-2.1
1,161,387	-				-1.2
1,161,387	-				-1.3
1,161,387	-				+0.7
1,161,387	-				-1.0
1,161,391	+				+0.7
1,161,391	+				+0.3
1,161,391	+				-1.5
1,161,391	+				+0.5
1,161,391	+				-1.3
1,161,392	-				-1.4
1,161,392	-				-0.2
1,161,392	-				-2.1
1,161,437	+				-1.3
1,161,438	-				-0.3
1,161,438	-				+0.3
1,161,438	-				-0.7
1,161,447	+				-0.3
1,161,448	-				+0.7
1,161,448	-				+1.2
1,161,486	-				-2.5
1,161,486	-				+1.4
1,161,514	+				+0.3
1,161,515	-		IAI47_05515	0.10	+0.5
1,161,554	+		IAI47_05515	0.15	+1.7
1,161,554	+		IAI47_05515	0.15	-0.1
1,161,554	+		IAI47_05515	0.15	+1.4
1,161,555	-		IAI47_05515	0.15	-0.0
1,161,585	+		IAI47_05515	0.19	+0.1
1,161,598	-		IAI47_05515	0.21	-1.2
1,161,598	-		IAI47_05515	0.21	-0.3
1,161,600	+		IAI47_05515	0.21	+0.3
1,161,600	+		IAI47_05515	0.21	+1.4
1,161,600	+		IAI47_05515	0.21	+0.3
1,161,600	+		IAI47_05515	0.21	+1.0
1,161,600	+		IAI47_05515	0.21	+0.5
1,161,601	-		IAI47_05515	0.21	-0.3
1,161,601	-		IAI47_05515	0.21	-0.3
1,161,601	-		IAI47_05515	0.21	-0.4
1,161,601	-		IAI47_05515	0.21	+0.7
1,161,601	-		IAI47_05515	0.21	-0.2
1,161,601	-		IAI47_05515	0.21	-0.3
1,161,601	-		IAI47_05515	0.21	-1.9
1,161,601	-		IAI47_05515	0.21	+0.7
1,161,609	+		IAI47_05515	0.22	-0.5
1,161,684	+		IAI47_05515	0.31	+1.7
1,161,684	+		IAI47_05515	0.31	+0.1
1,161,684	+		IAI47_05515	0.31	-2.3
1,161,684	+		IAI47_05515	0.31	+0.7
1,161,684	+		IAI47_05515	0.31	-1.2
1,161,684	+		IAI47_05515	0.31	-0.2
1,161,685	-		IAI47_05515	0.32	-0.3
1,161,685	-		IAI47_05515	0.32	-0.0
1,161,685	-		IAI47_05515	0.32	-0.9
1,161,690	+		IAI47_05515	0.32	-0.8
1,161,691	-		IAI47_05515	0.32	+0.7
1,161,732	+		IAI47_05515	0.38	-1.5
1,161,733	-		IAI47_05515	0.38	-0.6
1,161,733	-		IAI47_05515	0.38	-0.5
1,161,733	-		IAI47_05515	0.38	-0.0
1,161,750	+		IAI47_05515	0.40	+0.6
1,161,751	-		IAI47_05515	0.40	-0.4
1,161,812	+		IAI47_05515	0.48	-0.9
1,161,812	+		IAI47_05515	0.48	+1.2
1,161,813	-		IAI47_05515	0.48	-1.2
1,161,813	-		IAI47_05515	0.48	+0.7
1,161,837	+		IAI47_05515	0.51	-1.9
1,161,837	+		IAI47_05515	0.51	-0.0
1,161,838	-		IAI47_05515	0.51	-1.1
1,161,838	-		IAI47_05515	0.51	-1.1
1,161,838	-		IAI47_05515	0.51	+0.1
1,161,838	-		IAI47_05515	0.51	+0.4
1,161,911	-		IAI47_05515	0.60	-0.3
1,161,918	+		IAI47_05515	0.61	+0.2
1,161,918	+		IAI47_05515	0.61	+0.4
1,161,918	+		IAI47_05515	0.61	+0.5
1,161,918	+		IAI47_05515	0.61	-0.1
1,161,918	+		IAI47_05515	0.61	+1.0
1,161,919	-		IAI47_05515	0.61	+0.1
1,161,919	-		IAI47_05515	0.61	+1.1