Strain Fitness in Pantoea sp. MT58 around IAI47_04790

Experiment: Ying_all64 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_04780 and IAI47_04790 are separated by 597 nucleotidesIAI47_04790 and IAI47_04795 are separated by 158 nucleotidesIAI47_04795 and IAI47_04800 overlap by 8 nucleotidesIAI47_04800 and IAI47_04805 are separated by 95 nucleotides IAI47_04780: IAI47_04780 - tyrosine-type recombinase/integrase, at 1,005,252 to 1,006,454 _04780 IAI47_04790: IAI47_04790 - SsrA-binding protein SmpB, at 1,007,052 to 1,007,534 _04790 IAI47_04795: IAI47_04795 - type II toxin-antitoxin system RatA family toxin, at 1,007,693 to 1,008,127 _04795 IAI47_04800: IAI47_04800 - RnfH family protein, at 1,008,120 to 1,008,413 _04800 IAI47_04805: IAI47_04805 - outer membrane protein assembly factor BamE, at 1,008,509 to 1,008,856 _04805 Position (kb) 1007 1008Strain fitness (log2 ratio) -2 -1 0 1 2at 1006.067 kb on + strand, within IAI47_04780at 1006.067 kb on + strand, within IAI47_04780at 1006.068 kb on - strand, within IAI47_04780at 1006.078 kb on + strand, within IAI47_04780at 1006.079 kb on - strand, within IAI47_04780at 1006.079 kb on - strand, within IAI47_04780at 1006.103 kb on + strand, within IAI47_04780at 1006.103 kb on + strand, within IAI47_04780at 1006.104 kb on - strand, within IAI47_04780at 1006.104 kb on - strand, within IAI47_04780at 1006.104 kb on - strand, within IAI47_04780at 1006.104 kb on - strand, within IAI47_04780at 1006.142 kb on + strand, within IAI47_04780at 1006.143 kb on - strand, within IAI47_04780at 1006.170 kb on + strand, within IAI47_04780at 1006.170 kb on + strand, within IAI47_04780at 1006.170 kb on + strand, within IAI47_04780at 1006.170 kb on + strand, within IAI47_04780at 1006.170 kb on + strand, within IAI47_04780at 1006.170 kb on + strand, within IAI47_04780at 1006.170 kb on + strand, within IAI47_04780at 1006.170 kb on + strand, within IAI47_04780at 1006.170 kb on + strand, within IAI47_04780at 1006.170 kb on + strand, within IAI47_04780at 1006.171 kb on - strand, within IAI47_04780at 1006.213 kb on - strand, within IAI47_04780at 1006.213 kb on - strand, within IAI47_04780at 1006.222 kb on + strand, within IAI47_04780at 1006.222 kb on + strand, within IAI47_04780at 1006.223 kb on - strand, within IAI47_04780at 1006.223 kb on - strand, within IAI47_04780at 1006.223 kb on - strand, within IAI47_04780at 1006.223 kb on - strand, within IAI47_04780at 1006.246 kb on - strand, within IAI47_04780at 1006.268 kb on - strand, within IAI47_04780at 1006.268 kb on - strand, within IAI47_04780at 1006.275 kb on + strand, within IAI47_04780at 1006.276 kb on - strand, within IAI47_04780at 1006.276 kb on - strand, within IAI47_04780at 1006.276 kb on - strand, within IAI47_04780at 1006.276 kb on - strand, within IAI47_04780at 1006.295 kb on + strand, within IAI47_04780at 1006.296 kb on - strand, within IAI47_04780at 1006.296 kb on - strand, within IAI47_04780at 1006.296 kb on - strand, within IAI47_04780at 1006.298 kb on + strand, within IAI47_04780at 1006.298 kb on + strand, within IAI47_04780at 1006.298 kb on + strand, within IAI47_04780at 1006.298 kb on + strand, within IAI47_04780at 1006.298 kb on + strand, within IAI47_04780at 1006.299 kb on - strand, within IAI47_04780at 1006.299 kb on - strand, within IAI47_04780at 1006.299 kb on - strand, within IAI47_04780at 1006.299 kb on - strand, within IAI47_04780at 1006.299 kb on - strand, within IAI47_04780at 1006.301 kb on + strand, within IAI47_04780at 1006.301 kb on + strand, within IAI47_04780at 1006.301 kb on + strand, within IAI47_04780at 1006.301 kb on + strand, within IAI47_04780at 1006.301 kb on + strand, within IAI47_04780at 1006.301 kb on + strand, within IAI47_04780at 1006.302 kb on - strand, within IAI47_04780at 1006.302 kb on - strand, within IAI47_04780at 1006.302 kb on - strand, within IAI47_04780at 1006.302 kb on - strand, within IAI47_04780at 1006.302 kb on - strand, within IAI47_04780at 1006.302 kb on - strand, within IAI47_04780at 1006.302 kb on - strand, within IAI47_04780at 1006.302 kb on - strand, within IAI47_04780at 1006.338 kb on - strandat 1006.338 kb on - strandat 1006.406 kb on + strandat 1006.407 kb on - strandat 1006.407 kb on - strandat 1006.407 kb on - strandat 1006.407 kb on - strandat 1006.407 kb on - strandat 1006.471 kb on + strandat 1006.472 kb on - strandat 1006.479 kb on - strandat 1006.491 kb on + strandat 1006.492 kb on - strandat 1006.498 kb on + strandat 1006.498 kb on + strandat 1006.501 kb on - strandat 1006.526 kb on + strandat 1006.527 kb on - strandat 1006.560 kb on + strandat 1007.371 kb on + strand, within IAI47_04790at 1007.535 kb on - strandat 1007.550 kb on - strandat 1007.550 kb on - strandat 1007.550 kb on - strandat 1007.559 kb on - strandat 1007.559 kb on - strandat 1007.610 kb on + strandat 1007.610 kb on + strandat 1007.610 kb on + strandat 1007.610 kb on + strandat 1007.610 kb on + strandat 1007.611 kb on - strandat 1007.611 kb on - strandat 1007.611 kb on - strandat 1007.611 kb on - strandat 1007.611 kb on - strandat 1007.611 kb on - strandat 1007.642 kb on - strandat 1007.657 kb on + strandat 1007.657 kb on + strandat 1007.660 kb on + strandat 1008.128 kb on + strandat 1008.371 kb on - strand, within IAI47_04800at 1008.420 kb on - strandat 1008.420 kb on - strandat 1008.431 kb on + strandat 1008.431 kb on + strandat 1008.431 kb on + strandat 1008.431 kb on + strandat 1008.431 kb on + strandat 1008.432 kb on - strandat 1008.432 kb on - strandat 1008.432 kb on - strandat 1008.501 kb on + strandat 1008.502 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1
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1,006,067 + IAI47_04780 0.68 -0.4
1,006,067 + IAI47_04780 0.68 +0.1
1,006,068 - IAI47_04780 0.68 +1.7
1,006,078 + IAI47_04780 0.69 -0.3
1,006,079 - IAI47_04780 0.69 -1.0
1,006,079 - IAI47_04780 0.69 +0.1
1,006,103 + IAI47_04780 0.71 +0.3
1,006,103 + IAI47_04780 0.71 -1.0
1,006,104 - IAI47_04780 0.71 +0.5
1,006,104 - IAI47_04780 0.71 -0.2
1,006,104 - IAI47_04780 0.71 -1.1
1,006,104 - IAI47_04780 0.71 -0.2
1,006,142 + IAI47_04780 0.74 +0.1
1,006,143 - IAI47_04780 0.74 +1.1
1,006,170 + IAI47_04780 0.76 +0.7
1,006,170 + IAI47_04780 0.76 +0.7
1,006,170 + IAI47_04780 0.76 +0.7
1,006,170 + IAI47_04780 0.76 +0.7
1,006,170 + IAI47_04780 0.76 +1.1
1,006,170 + IAI47_04780 0.76 -2.4
1,006,170 + IAI47_04780 0.76 +1.0
1,006,170 + IAI47_04780 0.76 +0.9
1,006,170 + IAI47_04780 0.76 +1.7
1,006,170 + IAI47_04780 0.76 -0.1
1,006,171 - IAI47_04780 0.76 +0.1
1,006,213 - IAI47_04780 0.80 +1.7
1,006,213 - IAI47_04780 0.80 -1.3
1,006,222 + IAI47_04780 0.81 -0.5
1,006,222 + IAI47_04780 0.81 +0.6
1,006,223 - IAI47_04780 0.81 -0.6
1,006,223 - IAI47_04780 0.81 +1.7
1,006,223 - IAI47_04780 0.81 -0.5
1,006,223 - IAI47_04780 0.81 -0.2
1,006,246 - IAI47_04780 0.83 -0.5
1,006,268 - IAI47_04780 0.84 +0.1
1,006,268 - IAI47_04780 0.84 +0.2
1,006,275 + IAI47_04780 0.85 +1.0
1,006,276 - IAI47_04780 0.85 +0.9
1,006,276 - IAI47_04780 0.85 +0.6
1,006,276 - IAI47_04780 0.85 +0.2
1,006,276 - IAI47_04780 0.85 -0.3
1,006,295 + IAI47_04780 0.87 -0.1
1,006,296 - IAI47_04780 0.87 +1.7
1,006,296 - IAI47_04780 0.87 +0.3
1,006,296 - IAI47_04780 0.87 -0.1
1,006,298 + IAI47_04780 0.87 +0.4
1,006,298 + IAI47_04780 0.87 -1.5
1,006,298 + IAI47_04780 0.87 -0.3
1,006,298 + IAI47_04780 0.87 +0.0
1,006,298 + IAI47_04780 0.87 +1.9
1,006,299 - IAI47_04780 0.87 -0.3
1,006,299 - IAI47_04780 0.87 +0.4
1,006,299 - IAI47_04780 0.87 -0.9
1,006,299 - IAI47_04780 0.87 +2.0
1,006,299 - IAI47_04780 0.87 +0.9
1,006,301 + IAI47_04780 0.87 -0.5
1,006,301 + IAI47_04780 0.87 +1.1
1,006,301 + IAI47_04780 0.87 -0.0
1,006,301 + IAI47_04780 0.87 +0.5
1,006,301 + IAI47_04780 0.87 -0.1
1,006,301 + IAI47_04780 0.87 -0.4
1,006,302 - IAI47_04780 0.87 -0.0
1,006,302 - IAI47_04780 0.87 +0.2
1,006,302 - IAI47_04780 0.87 -0.5
1,006,302 - IAI47_04780 0.87 -0.6
1,006,302 - IAI47_04780 0.87 +0.0
1,006,302 - IAI47_04780 0.87 -0.3
1,006,302 - IAI47_04780 0.87 -2.4
1,006,302 - IAI47_04780 0.87 +0.7
1,006,338 - +0.9
1,006,338 - -0.9
1,006,406 + -0.7
1,006,407 - +0.7
1,006,407 - -0.0
1,006,407 - +0.8
1,006,407 - -0.9
1,006,407 - +0.0
1,006,471 + -0.0
1,006,472 - +1.0
1,006,479 - +0.7
1,006,491 + +0.1
1,006,492 - +0.0
1,006,498 + +0.4
1,006,498 + -0.4
1,006,501 - +1.5
1,006,526 + +1.3
1,006,527 - +2.5
1,006,560 + -0.7
1,007,371 + IAI47_04790 0.66 +0.7
1,007,535 - -2.4
1,007,550 - -0.9
1,007,550 - +0.3
1,007,550 - -0.4
1,007,559 - +1.1
1,007,559 - +0.5
1,007,610 + +0.4
1,007,610 + +0.1
1,007,610 + +0.9
1,007,610 + +0.6
1,007,610 + +1.3
1,007,611 - -0.1
1,007,611 - +1.0
1,007,611 - -0.4
1,007,611 - -1.3
1,007,611 - +0.7
1,007,611 - -0.4
1,007,642 - -1.9
1,007,657 + -1.3
1,007,657 + -0.1
1,007,660 + +2.7
1,008,128 + +1.4
1,008,371 - IAI47_04800 0.85 +1.3
1,008,420 - +1.2
1,008,420 - +0.5
1,008,431 + -0.5
1,008,431 + -0.3
1,008,431 + +0.3
1,008,431 + +2.3
1,008,431 + +0.3
1,008,432 - +0.6
1,008,432 - +1.5
1,008,432 - +0.7
1,008,501 + -0.9
1,008,502 - +0.3

Or see this region's nucleotide sequence