Experiment: Ying_all64 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_04190 and IAI47_04195 are separated by 54 nucleotides IAI47_04195 and IAI47_04200 are separated by 169 nucleotides IAI47_04200 and IAI47_04205 are separated by 3 nucleotides IAI47_04205 and IAI47_04210 overlap by 4 nucleotides
IAI47_04190: IAI47_04190 - adenylyl-sulfate kinase, at 881,688 to 882,293
_04190
IAI47_04195: IAI47_04195 - DUF3561 family protein, at 882,348 to 882,668
_04195
IAI47_04200: IAI47_04200 - cell division protein FtsB, at 882,838 to 883,155
_04200
IAI47_04205: IAI47_04205 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 883,159 to 883,875
_04205
IAI47_04210: IAI47_04210 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 883,872 to 884,357
_04210
Position (kb) 882
883
884 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 881.849 kb on + strand, within IAI47_04190 at 881.850 kb on - strand, within IAI47_04190 at 881.861 kb on + strand, within IAI47_04190 at 881.861 kb on + strand, within IAI47_04190 at 881.862 kb on - strand, within IAI47_04190 at 881.862 kb on - strand, within IAI47_04190 at 881.862 kb on - strand, within IAI47_04190 at 881.862 kb on - strand, within IAI47_04190 at 881.862 kb on - strand, within IAI47_04190 at 881.865 kb on + strand, within IAI47_04190 at 881.865 kb on + strand, within IAI47_04190 at 881.865 kb on + strand, within IAI47_04190 at 881.866 kb on - strand, within IAI47_04190 at 881.866 kb on - strand, within IAI47_04190 at 881.866 kb on - strand, within IAI47_04190 at 882.008 kb on + strand, within IAI47_04190 at 882.127 kb on + strand, within IAI47_04190 at 882.127 kb on + strand, within IAI47_04190 at 882.128 kb on - strand, within IAI47_04190 at 882.129 kb on + strand, within IAI47_04190 at 882.129 kb on + strand, within IAI47_04190 at 882.129 kb on + strand, within IAI47_04190 at 882.130 kb on - strand, within IAI47_04190 at 882.130 kb on - strand, within IAI47_04190 at 882.158 kb on + strand, within IAI47_04190 at 882.159 kb on - strand, within IAI47_04190 at 882.183 kb on + strand, within IAI47_04190 at 882.184 kb on - strand, within IAI47_04190 at 882.233 kb on + strand at 882.233 kb on + strand at 882.234 kb on - strand at 882.256 kb on + strand at 882.256 kb on + strand at 882.256 kb on + strand at 882.278 kb on + strand at 882.278 kb on + strand at 882.347 kb on + strand at 882.347 kb on + strand at 882.347 kb on + strand at 882.347 kb on + strand at 882.347 kb on + strand at 882.348 kb on - strand at 882.348 kb on - strand at 882.348 kb on - strand at 882.348 kb on - strand at 882.348 kb on - strand at 882.348 kb on - strand at 882.377 kb on + strand at 882.377 kb on + strand at 882.378 kb on - strand at 882.436 kb on + strand, within IAI47_04195 at 882.436 kb on + strand, within IAI47_04195 at 882.437 kb on - strand, within IAI47_04195 at 882.444 kb on + strand, within IAI47_04195 at 882.444 kb on + strand, within IAI47_04195 at 882.445 kb on - strand, within IAI47_04195 at 882.507 kb on + strand, within IAI47_04195 at 882.507 kb on + strand, within IAI47_04195 at 882.507 kb on + strand, within IAI47_04195 at 882.507 kb on + strand, within IAI47_04195 at 882.509 kb on + strand, within IAI47_04195 at 882.510 kb on - strand, within IAI47_04195 at 882.569 kb on + strand, within IAI47_04195 at 882.569 kb on + strand, within IAI47_04195 at 882.570 kb on - strand, within IAI47_04195 at 882.608 kb on + strand, within IAI47_04195 at 882.608 kb on + strand, within IAI47_04195 at 882.608 kb on + strand, within IAI47_04195 at 882.608 kb on + strand, within IAI47_04195 at 882.609 kb on - strand, within IAI47_04195 at 882.617 kb on + strand, within IAI47_04195 at 882.617 kb on + strand, within IAI47_04195 at 882.617 kb on + strand, within IAI47_04195 at 882.618 kb on - strand, within IAI47_04195 at 882.618 kb on - strand, within IAI47_04195 at 882.618 kb on - strand, within IAI47_04195 at 882.640 kb on + strand at 882.640 kb on + strand at 882.641 kb on - strand at 882.641 kb on - strand at 882.667 kb on - strand at 882.712 kb on + strand at 882.738 kb on + strand at 883.145 kb on + strand at 883.153 kb on + strand at 883.153 kb on + strand at 883.859 kb on + strand at 883.859 kb on + strand at 883.859 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1 remove 881,849 + IAI47_04190 0.27 -0.4 881,850 - IAI47_04190 0.27 -0.1 881,861 + IAI47_04190 0.29 +0.2 881,861 + IAI47_04190 0.29 +0.7 881,862 - IAI47_04190 0.29 +0.5 881,862 - IAI47_04190 0.29 +0.3 881,862 - IAI47_04190 0.29 -0.0 881,862 - IAI47_04190 0.29 +0.3 881,862 - IAI47_04190 0.29 +0.3 881,865 + IAI47_04190 0.29 -1.3 881,865 + IAI47_04190 0.29 +0.1 881,865 + IAI47_04190 0.29 +0.2 881,866 - IAI47_04190 0.29 +0.5 881,866 - IAI47_04190 0.29 -0.5 881,866 - IAI47_04190 0.29 -1.1 882,008 + IAI47_04190 0.53 -1.3 882,127 + IAI47_04190 0.72 -0.1 882,127 + IAI47_04190 0.72 +0.7 882,128 - IAI47_04190 0.73 -0.3 882,129 + IAI47_04190 0.73 -1.0 882,129 + IAI47_04190 0.73 -0.4 882,129 + IAI47_04190 0.73 +1.2 882,130 - IAI47_04190 0.73 -0.3 882,130 - IAI47_04190 0.73 +0.2 882,158 + IAI47_04190 0.78 -0.5 882,159 - IAI47_04190 0.78 +2.7 882,183 + IAI47_04190 0.82 -0.9 882,184 - IAI47_04190 0.82 -1.1 882,233 + +0.5 882,233 + -0.3 882,234 - -0.2 882,256 + -0.7 882,256 + -0.0 882,256 + +0.3 882,278 + +0.5 882,278 + -0.4 882,347 + -0.5 882,347 + -0.1 882,347 + +1.4 882,347 + -0.6 882,347 + +0.7 882,348 - +1.0 882,348 - +0.2 882,348 - +0.5 882,348 - +0.2 882,348 - +0.4 882,348 - -0.7 882,377 + -0.4 882,377 + +0.0 882,378 - +0.1 882,436 + IAI47_04195 0.27 -0.5 882,436 + IAI47_04195 0.27 +0.8 882,437 - IAI47_04195 0.28 -0.6 882,444 + IAI47_04195 0.30 +2.3 882,444 + IAI47_04195 0.30 +2.3 882,445 - IAI47_04195 0.30 -0.1 882,507 + IAI47_04195 0.50 -1.3 882,507 + IAI47_04195 0.50 +0.1 882,507 + IAI47_04195 0.50 -1.7 882,507 + IAI47_04195 0.50 +0.4 882,509 + IAI47_04195 0.50 +0.3 882,510 - IAI47_04195 0.50 +1.0 882,569 + IAI47_04195 0.69 -0.1 882,569 + IAI47_04195 0.69 +4.2 882,570 - IAI47_04195 0.69 -0.3 882,608 + IAI47_04195 0.81 +0.9 882,608 + IAI47_04195 0.81 -1.6 882,608 + IAI47_04195 0.81 +1.1 882,608 + IAI47_04195 0.81 -1.0 882,609 - IAI47_04195 0.81 +0.1 882,617 + IAI47_04195 0.84 -0.1 882,617 + IAI47_04195 0.84 +1.2 882,617 + IAI47_04195 0.84 +0.3 882,618 - IAI47_04195 0.84 -0.9 882,618 - IAI47_04195 0.84 -0.2 882,618 - IAI47_04195 0.84 +1.0 882,640 + +0.5 882,640 + -0.1 882,641 - +0.3 882,641 - +0.0 882,667 - +0.4 882,712 + +0.2 882,738 + +0.7 883,145 + -0.1 883,153 + +0.0 883,153 + +0.5 883,859 + -0.9 883,859 + +0.1 883,859 + +0.6
Or see this region's nucleotide sequence