Experiment: Ying_all64 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_02565 and IAI47_02570 overlap by 4 nucleotides IAI47_02570 and IAI47_02575 overlap by 4 nucleotides
IAI47_02565: IAI47_02565 - bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase, at 529,710 to 531,230
_02565
IAI47_02570: IAI47_02570 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE, at 531,227 to 531,703
_02570
IAI47_02575: IAI47_02575 - N-acetylmuramoyl-L-alanine amidase AmiB, at 531,700 to 533,370
_02575
Position (kb) 531
532 Strain fitness (log2 ratio) -2
-1
0
1
2 at 530.264 kb on + strand, within IAI47_02565 at 530.264 kb on + strand, within IAI47_02565 at 530.265 kb on - strand, within IAI47_02565 at 530.265 kb on - strand, within IAI47_02565 at 530.265 kb on - strand, within IAI47_02565 at 530.265 kb on - strand, within IAI47_02565 at 530.265 kb on - strand, within IAI47_02565 at 530.265 kb on - strand, within IAI47_02565 at 530.265 kb on - strand, within IAI47_02565 at 530.265 kb on - strand, within IAI47_02565 at 530.276 kb on + strand, within IAI47_02565 at 530.276 kb on + strand, within IAI47_02565 at 530.277 kb on - strand, within IAI47_02565 at 530.277 kb on - strand, within IAI47_02565 at 530.277 kb on - strand, within IAI47_02565 at 530.277 kb on - strand, within IAI47_02565 at 530.285 kb on + strand, within IAI47_02565 at 530.285 kb on + strand, within IAI47_02565 at 530.285 kb on + strand, within IAI47_02565 at 530.286 kb on - strand, within IAI47_02565 at 530.333 kb on + strand, within IAI47_02565 at 530.333 kb on + strand, within IAI47_02565 at 530.334 kb on - strand, within IAI47_02565 at 530.349 kb on + strand, within IAI47_02565 at 530.350 kb on - strand, within IAI47_02565 at 530.350 kb on - strand, within IAI47_02565 at 530.350 kb on - strand, within IAI47_02565 at 530.407 kb on - strand, within IAI47_02565 at 530.407 kb on - strand, within IAI47_02565 at 530.444 kb on + strand, within IAI47_02565 at 530.518 kb on + strand, within IAI47_02565 at 530.574 kb on - strand, within IAI47_02565 at 530.574 kb on - strand, within IAI47_02565 at 530.586 kb on - strand, within IAI47_02565 at 530.588 kb on + strand, within IAI47_02565 at 530.588 kb on + strand, within IAI47_02565 at 530.588 kb on + strand, within IAI47_02565 at 530.589 kb on - strand, within IAI47_02565 at 530.589 kb on - strand, within IAI47_02565 at 530.589 kb on - strand, within IAI47_02565 at 530.621 kb on + strand, within IAI47_02565 at 530.621 kb on + strand, within IAI47_02565 at 530.622 kb on - strand, within IAI47_02565 at 530.622 kb on - strand, within IAI47_02565 at 530.622 kb on - strand, within IAI47_02565 at 530.622 kb on - strand, within IAI47_02565 at 530.678 kb on + strand, within IAI47_02565 at 530.679 kb on - strand, within IAI47_02565 at 530.745 kb on - strand, within IAI47_02565 at 530.780 kb on + strand, within IAI47_02565 at 530.780 kb on + strand, within IAI47_02565 at 530.781 kb on - strand, within IAI47_02565 at 530.822 kb on + strand, within IAI47_02565 at 530.822 kb on + strand, within IAI47_02565 at 530.822 kb on + strand, within IAI47_02565 at 530.822 kb on + strand, within IAI47_02565 at 530.823 kb on - strand, within IAI47_02565 at 530.823 kb on - strand, within IAI47_02565 at 530.823 kb on - strand, within IAI47_02565 at 530.823 kb on - strand, within IAI47_02565 at 530.825 kb on + strand, within IAI47_02565 at 530.825 kb on + strand, within IAI47_02565 at 530.826 kb on - strand, within IAI47_02565 at 530.826 kb on - strand, within IAI47_02565 at 530.826 kb on - strand, within IAI47_02565 at 530.854 kb on + strand, within IAI47_02565 at 530.855 kb on - strand, within IAI47_02565 at 530.893 kb on + strand, within IAI47_02565 at 530.893 kb on + strand, within IAI47_02565 at 530.893 kb on + strand, within IAI47_02565 at 530.893 kb on + strand, within IAI47_02565 at 530.894 kb on - strand, within IAI47_02565 at 530.894 kb on - strand, within IAI47_02565 at 530.894 kb on - strand, within IAI47_02565 at 530.894 kb on - strand, within IAI47_02565 at 530.921 kb on + strand, within IAI47_02565 at 530.922 kb on + strand, within IAI47_02565 at 530.922 kb on + strand, within IAI47_02565 at 530.923 kb on - strand, within IAI47_02565 at 530.923 kb on - strand, within IAI47_02565 at 530.923 kb on - strand, within IAI47_02565 at 530.932 kb on + strand, within IAI47_02565 at 531.026 kb on + strand, within IAI47_02565 at 531.026 kb on + strand, within IAI47_02565 at 531.026 kb on + strand, within IAI47_02565 at 531.027 kb on - strand, within IAI47_02565 at 531.027 kb on - strand, within IAI47_02565 at 531.027 kb on - strand, within IAI47_02565 at 531.050 kb on + strand, within IAI47_02565 at 531.050 kb on + strand, within IAI47_02565 at 531.050 kb on + strand, within IAI47_02565 at 531.161 kb on + strand at 531.161 kb on + strand at 531.178 kb on + strand at 531.178 kb on + strand at 531.179 kb on - strand at 531.218 kb on + strand at 531.218 kb on + strand at 531.218 kb on + strand at 531.218 kb on + strand at 531.218 kb on + strand at 531.694 kb on + strand at 531.694 kb on + strand at 531.728 kb on + strand at 532.057 kb on + strand, within IAI47_02575
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1 remove 530,264 + IAI47_02565 0.36 +0.0 530,264 + IAI47_02565 0.36 -0.2 530,265 - IAI47_02565 0.36 +1.1 530,265 - IAI47_02565 0.36 -0.2 530,265 - IAI47_02565 0.36 -0.9 530,265 - IAI47_02565 0.36 +0.6 530,265 - IAI47_02565 0.36 -0.7 530,265 - IAI47_02565 0.36 +1.5 530,265 - IAI47_02565 0.36 +0.9 530,265 - IAI47_02565 0.36 -0.7 530,276 + IAI47_02565 0.37 -0.9 530,276 + IAI47_02565 0.37 +1.2 530,277 - IAI47_02565 0.37 +2.3 530,277 - IAI47_02565 0.37 +1.5 530,277 - IAI47_02565 0.37 -0.9 530,277 - IAI47_02565 0.37 -2.4 530,285 + IAI47_02565 0.38 +0.4 530,285 + IAI47_02565 0.38 -1.6 530,285 + IAI47_02565 0.38 -0.9 530,286 - IAI47_02565 0.38 -1.1 530,333 + IAI47_02565 0.41 -0.3 530,333 + IAI47_02565 0.41 +1.5 530,334 - IAI47_02565 0.41 +0.1 530,349 + IAI47_02565 0.42 -0.1 530,350 - IAI47_02565 0.42 +2.3 530,350 - IAI47_02565 0.42 -1.7 530,350 - IAI47_02565 0.42 -0.4 530,407 - IAI47_02565 0.46 -0.7 530,407 - IAI47_02565 0.46 +0.1 530,444 + IAI47_02565 0.48 +0.7 530,518 + IAI47_02565 0.53 +0.4 530,574 - IAI47_02565 0.57 -0.4 530,574 - IAI47_02565 0.57 +1.1 530,586 - IAI47_02565 0.58 +0.3 530,588 + IAI47_02565 0.58 +1.0 530,588 + IAI47_02565 0.58 +0.2 530,588 + IAI47_02565 0.58 +0.1 530,589 - IAI47_02565 0.58 +0.3 530,589 - IAI47_02565 0.58 -1.3 530,589 - IAI47_02565 0.58 -0.3 530,621 + IAI47_02565 0.60 +0.3 530,621 + IAI47_02565 0.60 -1.0 530,622 - IAI47_02565 0.60 -0.6 530,622 - IAI47_02565 0.60 +1.0 530,622 - IAI47_02565 0.60 -0.4 530,622 - IAI47_02565 0.60 -1.5 530,678 + IAI47_02565 0.64 -0.2 530,679 - IAI47_02565 0.64 +1.7 530,745 - IAI47_02565 0.68 +0.0 530,780 + IAI47_02565 0.70 -0.9 530,780 + IAI47_02565 0.70 -0.7 530,781 - IAI47_02565 0.70 -0.4 530,822 + IAI47_02565 0.73 +1.1 530,822 + IAI47_02565 0.73 +0.3 530,822 + IAI47_02565 0.73 -0.9 530,822 + IAI47_02565 0.73 -1.3 530,823 - IAI47_02565 0.73 +0.5 530,823 - IAI47_02565 0.73 +0.4 530,823 - IAI47_02565 0.73 -1.1 530,823 - IAI47_02565 0.73 +0.0 530,825 + IAI47_02565 0.73 -0.3 530,825 + IAI47_02565 0.73 +0.7 530,826 - IAI47_02565 0.73 -0.7 530,826 - IAI47_02565 0.73 -1.2 530,826 - IAI47_02565 0.73 +1.0 530,854 + IAI47_02565 0.75 -0.6 530,855 - IAI47_02565 0.75 -1.8 530,893 + IAI47_02565 0.78 +0.3 530,893 + IAI47_02565 0.78 +0.3 530,893 + IAI47_02565 0.78 -0.7 530,893 + IAI47_02565 0.78 -0.0 530,894 - IAI47_02565 0.78 +0.9 530,894 - IAI47_02565 0.78 +0.1 530,894 - IAI47_02565 0.78 -0.4 530,894 - IAI47_02565 0.78 -0.3 530,921 + IAI47_02565 0.80 +0.1 530,922 + IAI47_02565 0.80 -1.1 530,922 + IAI47_02565 0.80 +0.1 530,923 - IAI47_02565 0.80 +0.7 530,923 - IAI47_02565 0.80 -0.0 530,923 - IAI47_02565 0.80 -1.7 530,932 + IAI47_02565 0.80 +0.0 531,026 + IAI47_02565 0.87 -0.3 531,026 + IAI47_02565 0.87 -1.6 531,026 + IAI47_02565 0.87 +0.3 531,027 - IAI47_02565 0.87 -0.3 531,027 - IAI47_02565 0.87 -2.1 531,027 - IAI47_02565 0.87 -0.3 531,050 + IAI47_02565 0.88 -0.3 531,050 + IAI47_02565 0.88 -0.5 531,050 + IAI47_02565 0.88 +0.2 531,161 + +0.1 531,161 + +1.1 531,178 + +0.3 531,178 + +0.5 531,179 - -0.9 531,218 + -1.2 531,218 + +0.9 531,218 + -1.3 531,218 + +0.5 531,218 + +0.0 531,694 + +0.0 531,694 + +0.4 531,728 + -0.3 532,057 + IAI47_02575 0.21 -0.6
Or see this region's nucleotide sequence