Experiment: Ying_all64 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_02535 and IAI47_02540 are separated by 101 nucleotides IAI47_02540 and IAI47_02545 are separated by 154 nucleotides IAI47_02545 and IAI47_02550 are separated by 28 nucleotides IAI47_02550 and IAI47_02555 are separated by 26 nucleotides IAI47_02555 and IAI47_02560 are separated by 348 nucleotides
IAI47_02535: IAI47_02535 - small ribosomal subunit biogenesis GTPase RsgA, at 526,088 to 527,137
_02535
IAI47_02540: IAI47_02540 - oligoribonuclease, at 527,239 to 527,787
_02540
IAI47_02545: IAI47_02545 - tRNA-Gly, at 527,942 to 528,017
_02545
IAI47_02550: IAI47_02550 - tRNA-Gly, at 528,046 to 528,121
_02550
IAI47_02555: IAI47_02555 - tRNA-Gly, at 528,148 to 528,223
_02555
IAI47_02560: IAI47_02560 - tRNA epoxyqueuosine(34) reductase QueG, at 528,572 to 529,711
_02560
Position (kb) 527
528
529 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 527.186 kb on - strand at 527.186 kb on - strand at 527.186 kb on - strand at 527.190 kb on + strand at 527.190 kb on + strand at 527.190 kb on + strand at 527.190 kb on + strand at 527.190 kb on + strand at 527.190 kb on + strand at 527.190 kb on + strand at 527.197 kb on + strand at 527.197 kb on + strand at 527.197 kb on + strand at 527.197 kb on + strand at 527.197 kb on + strand at 527.197 kb on + strand at 527.197 kb on + strand at 527.197 kb on + strand at 527.217 kb on + strand at 527.785 kb on + strand at 527.786 kb on - strand at 527.786 kb on - strand at 527.855 kb on + strand at 527.856 kb on - strand at 527.856 kb on - strand at 527.928 kb on + strand at 527.934 kb on + strand at 527.934 kb on + strand at 528.022 kb on + strand at 528.029 kb on + strand at 528.029 kb on + strand at 528.029 kb on + strand at 528.029 kb on + strand at 528.036 kb on + strand at 528.130 kb on + strand at 528.130 kb on + strand at 528.130 kb on + strand at 528.146 kb on - strand at 528.146 kb on - strand at 528.228 kb on + strand at 528.228 kb on + strand at 528.228 kb on + strand at 528.228 kb on + strand at 528.228 kb on + strand at 528.264 kb on + strand at 528.265 kb on - strand at 528.265 kb on - strand at 528.333 kb on - strand at 528.345 kb on - strand at 528.365 kb on + strand at 528.365 kb on + strand at 528.366 kb on - strand at 528.406 kb on - strand at 528.413 kb on - strand at 528.429 kb on + strand at 528.472 kb on - strand at 528.493 kb on + strand at 528.494 kb on - strand at 528.567 kb on + strand at 528.567 kb on + strand at 528.568 kb on - strand at 528.568 kb on - strand at 528.588 kb on - strand at 528.599 kb on + strand at 528.599 kb on + strand at 528.599 kb on + strand at 528.599 kb on + strand at 528.600 kb on - strand at 528.600 kb on - strand at 528.600 kb on - strand at 528.600 kb on - strand at 528.742 kb on + strand, within IAI47_02560 at 528.742 kb on + strand, within IAI47_02560 at 528.743 kb on - strand, within IAI47_02560 at 528.743 kb on - strand, within IAI47_02560 at 528.787 kb on + strand, within IAI47_02560 at 528.787 kb on + strand, within IAI47_02560 at 528.787 kb on + strand, within IAI47_02560 at 528.787 kb on + strand, within IAI47_02560 at 528.787 kb on + strand, within IAI47_02560 at 528.787 kb on + strand, within IAI47_02560 at 528.787 kb on + strand, within IAI47_02560 at 528.788 kb on - strand, within IAI47_02560 at 528.788 kb on - strand, within IAI47_02560 at 528.788 kb on - strand, within IAI47_02560 at 528.788 kb on - strand, within IAI47_02560 at 528.788 kb on - strand, within IAI47_02560 at 528.788 kb on - strand, within IAI47_02560 at 528.788 kb on - strand, within IAI47_02560 at 528.788 kb on - strand, within IAI47_02560 at 528.788 kb on - strand, within IAI47_02560 at 528.788 kb on - strand, within IAI47_02560 at 528.788 kb on - strand, within IAI47_02560 at 528.791 kb on + strand, within IAI47_02560 at 528.791 kb on + strand, within IAI47_02560 at 528.791 kb on + strand, within IAI47_02560 at 528.792 kb on - strand, within IAI47_02560 at 528.792 kb on - strand, within IAI47_02560 at 528.800 kb on + strand, within IAI47_02560 at 528.800 kb on + strand, within IAI47_02560 at 528.800 kb on + strand, within IAI47_02560 at 528.800 kb on + strand, within IAI47_02560 at 528.800 kb on + strand, within IAI47_02560 at 528.801 kb on - strand, within IAI47_02560 at 528.801 kb on - strand, within IAI47_02560 at 528.836 kb on + strand, within IAI47_02560 at 528.836 kb on + strand, within IAI47_02560 at 528.837 kb on - strand, within IAI47_02560 at 528.837 kb on - strand, within IAI47_02560 at 528.837 kb on - strand, within IAI47_02560 at 528.842 kb on + strand, within IAI47_02560 at 528.893 kb on + strand, within IAI47_02560 at 528.894 kb on - strand, within IAI47_02560 at 528.928 kb on + strand, within IAI47_02560 at 528.928 kb on + strand, within IAI47_02560 at 528.929 kb on - strand, within IAI47_02560 at 528.929 kb on - strand, within IAI47_02560 at 528.940 kb on - strand, within IAI47_02560 at 528.981 kb on + strand, within IAI47_02560 at 528.981 kb on + strand, within IAI47_02560 at 528.982 kb on - strand, within IAI47_02560
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1 remove 527,186 - +1.5 527,186 - -0.8 527,186 - +1.0 527,190 + -0.9 527,190 + -1.2 527,190 + -0.7 527,190 + -0.9 527,190 + -1.6 527,190 + -0.5 527,190 + -1.5 527,197 + +0.7 527,197 + +0.3 527,197 + +0.0 527,197 + +2.5 527,197 + -0.8 527,197 + +0.5 527,197 + +0.3 527,197 + -0.1 527,217 + +1.3 527,785 + -0.1 527,786 - +0.2 527,786 - -0.0 527,855 + -1.6 527,856 - +2.8 527,856 - -0.9 527,928 + +0.3 527,934 + -0.1 527,934 + +0.0 528,022 + -1.9 528,029 + -0.3 528,029 + +1.2 528,029 + +0.6 528,029 + +0.2 528,036 + -1.3 528,130 + -0.3 528,130 + -0.8 528,130 + +0.3 528,146 - +0.3 528,146 - -1.2 528,228 + -0.7 528,228 + +0.7 528,228 + -1.5 528,228 + -0.5 528,228 + -0.4 528,264 + -0.7 528,265 - +0.0 528,265 - +0.7 528,333 - +0.5 528,345 - -0.3 528,365 + +0.7 528,365 + -0.5 528,366 - -1.1 528,406 - +0.8 528,413 - -1.0 528,429 + -0.7 528,472 - -0.6 528,493 + -0.6 528,494 - -0.4 528,567 + -0.4 528,567 + -0.2 528,568 - -0.3 528,568 - -0.6 528,588 - -0.4 528,599 + +0.1 528,599 + -0.4 528,599 + +0.0 528,599 + -0.6 528,600 - +0.3 528,600 - +1.5 528,600 - -0.4 528,600 - -1.0 528,742 + IAI47_02560 0.15 +0.3 528,742 + IAI47_02560 0.15 +0.7 528,743 - IAI47_02560 0.15 -0.9 528,743 - IAI47_02560 0.15 +0.3 528,787 + IAI47_02560 0.19 -0.8 528,787 + IAI47_02560 0.19 +0.5 528,787 + IAI47_02560 0.19 +1.3 528,787 + IAI47_02560 0.19 +0.4 528,787 + IAI47_02560 0.19 -0.3 528,787 + IAI47_02560 0.19 -0.2 528,787 + IAI47_02560 0.19 +0.7 528,788 - IAI47_02560 0.19 -0.1 528,788 - IAI47_02560 0.19 -1.6 528,788 - IAI47_02560 0.19 +0.1 528,788 - IAI47_02560 0.19 +2.7 528,788 - IAI47_02560 0.19 -1.1 528,788 - IAI47_02560 0.19 +0.4 528,788 - IAI47_02560 0.19 -0.6 528,788 - IAI47_02560 0.19 +1.5 528,788 - IAI47_02560 0.19 +0.2 528,788 - IAI47_02560 0.19 +1.1 528,788 - IAI47_02560 0.19 +0.1 528,791 + IAI47_02560 0.19 -1.5 528,791 + IAI47_02560 0.19 -0.7 528,791 + IAI47_02560 0.19 -0.8 528,792 - IAI47_02560 0.19 -1.3 528,792 - IAI47_02560 0.19 +0.5 528,800 + IAI47_02560 0.20 +0.2 528,800 + IAI47_02560 0.20 +0.0 528,800 + IAI47_02560 0.20 +0.7 528,800 + IAI47_02560 0.20 +0.1 528,800 + IAI47_02560 0.20 +2.0 528,801 - IAI47_02560 0.20 -0.8 528,801 - IAI47_02560 0.20 -1.3 528,836 + IAI47_02560 0.23 +1.5 528,836 + IAI47_02560 0.23 -0.6 528,837 - IAI47_02560 0.23 +1.0 528,837 - IAI47_02560 0.23 -0.4 528,837 - IAI47_02560 0.23 +0.7 528,842 + IAI47_02560 0.24 -0.7 528,893 + IAI47_02560 0.28 -0.5 528,894 - IAI47_02560 0.28 +0.7 528,928 + IAI47_02560 0.31 +0.1 528,928 + IAI47_02560 0.31 -0.9 528,929 - IAI47_02560 0.31 -0.8 528,929 - IAI47_02560 0.31 -1.3 528,940 - IAI47_02560 0.32 -1.0 528,981 + IAI47_02560 0.36 +0.6 528,981 + IAI47_02560 0.36 +0.1 528,982 - IAI47_02560 0.36 +0.2
Or see this region's nucleotide sequence