Experiment: Ying_all64 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_01330 and IAI47_01335 overlap by 4 nucleotides IAI47_01335 and IAI47_01340 are separated by 6 nucleotides
IAI47_01330: IAI47_01330 - ribonuclease Z, at 287,187 to 288,098
_01330
IAI47_01335: IAI47_01335 - CPBP family intramembrane metalloprotease, at 288,095 to 288,913
_01335
IAI47_01340: IAI47_01340 - 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ, at 288,920 to 289,762
_01340
Position (kb) 288
289 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 287.101 kb on - strand at 287.101 kb on - strand at 287.136 kb on + strand at 287.136 kb on + strand at 287.137 kb on - strand at 287.144 kb on + strand at 287.144 kb on + strand at 287.145 kb on - strand at 287.145 kb on - strand at 287.145 kb on - strand at 287.145 kb on - strand at 287.145 kb on - strand at 287.145 kb on - strand at 287.145 kb on - strand at 287.145 kb on - strand at 287.147 kb on + strand at 287.147 kb on + strand at 287.148 kb on - strand at 287.148 kb on - strand at 287.149 kb on - strand at 287.171 kb on + strand at 287.171 kb on + strand at 287.172 kb on - strand at 287.183 kb on + strand at 287.183 kb on + strand at 287.183 kb on + strand at 287.183 kb on + strand at 287.183 kb on + strand at 287.183 kb on + strand at 287.183 kb on + strand at 287.184 kb on - strand at 287.184 kb on - strand at 287.184 kb on - strand at 287.184 kb on - strand at 287.184 kb on - strand at 287.184 kb on - strand at 287.184 kb on - strand at 287.184 kb on - strand at 287.184 kb on - strand at 287.195 kb on + strand at 287.196 kb on - strand at 287.196 kb on - strand at 287.237 kb on + strand at 287.237 kb on + strand at 287.237 kb on + strand at 287.237 kb on + strand at 287.237 kb on + strand at 287.238 kb on - strand at 287.238 kb on - strand at 287.238 kb on - strand at 287.238 kb on - strand at 287.258 kb on + strand at 287.259 kb on - strand at 287.314 kb on + strand, within IAI47_01330 at 287.314 kb on + strand, within IAI47_01330 at 287.314 kb on + strand, within IAI47_01330 at 287.315 kb on - strand, within IAI47_01330 at 287.315 kb on - strand, within IAI47_01330 at 287.322 kb on - strand, within IAI47_01330 at 287.363 kb on + strand, within IAI47_01330 at 287.364 kb on - strand, within IAI47_01330 at 287.387 kb on + strand, within IAI47_01330 at 287.388 kb on - strand, within IAI47_01330 at 287.407 kb on + strand, within IAI47_01330 at 287.407 kb on + strand, within IAI47_01330 at 287.454 kb on + strand, within IAI47_01330 at 287.454 kb on + strand, within IAI47_01330 at 287.454 kb on + strand, within IAI47_01330 at 287.454 kb on + strand, within IAI47_01330 at 287.455 kb on - strand, within IAI47_01330 at 287.455 kb on - strand, within IAI47_01330 at 287.455 kb on - strand, within IAI47_01330 at 287.470 kb on + strand, within IAI47_01330 at 287.511 kb on + strand, within IAI47_01330 at 287.511 kb on + strand, within IAI47_01330 at 287.511 kb on + strand, within IAI47_01330 at 287.511 kb on + strand, within IAI47_01330 at 287.512 kb on - strand, within IAI47_01330 at 287.769 kb on + strand, within IAI47_01330 at 287.769 kb on + strand, within IAI47_01330 at 287.770 kb on - strand, within IAI47_01330 at 287.770 kb on - strand, within IAI47_01330 at 287.770 kb on - strand, within IAI47_01330 at 287.770 kb on - strand, within IAI47_01330 at 287.770 kb on - strand, within IAI47_01330 at 288.004 kb on - strand, within IAI47_01330 at 288.086 kb on - strand at 288.086 kb on - strand at 288.086 kb on - strand at 288.096 kb on + strand at 288.096 kb on + strand at 288.097 kb on - strand at 288.114 kb on + strand at 288.114 kb on + strand at 288.115 kb on - strand at 288.118 kb on + strand at 288.118 kb on + strand at 288.118 kb on + strand at 288.118 kb on + strand at 288.119 kb on - strand at 288.119 kb on - strand at 288.119 kb on - strand at 288.142 kb on + strand at 288.204 kb on + strand, within IAI47_01335 at 288.205 kb on - strand, within IAI47_01335 at 288.230 kb on + strand, within IAI47_01335 at 288.230 kb on + strand, within IAI47_01335 at 288.256 kb on + strand, within IAI47_01335 at 288.256 kb on + strand, within IAI47_01335 at 288.257 kb on - strand, within IAI47_01335 at 288.257 kb on - strand, within IAI47_01335 at 288.337 kb on - strand, within IAI47_01335 at 288.391 kb on + strand, within IAI47_01335 at 288.454 kb on + strand, within IAI47_01335 at 288.454 kb on + strand, within IAI47_01335 at 288.455 kb on - strand, within IAI47_01335 at 288.455 kb on - strand, within IAI47_01335 at 288.580 kb on + strand, within IAI47_01335 at 288.656 kb on - strand, within IAI47_01335 at 288.704 kb on + strand, within IAI47_01335 at 288.819 kb on + strand, within IAI47_01335 at 288.819 kb on + strand, within IAI47_01335 at 288.819 kb on + strand, within IAI47_01335 at 288.846 kb on - strand at 288.854 kb on + strand at 288.921 kb on + strand at 288.922 kb on - strand at 288.941 kb on + strand at 288.942 kb on - strand at 288.948 kb on + strand at 288.949 kb on - strand at 288.949 kb on - strand at 289.000 kb on + strand at 289.000 kb on + strand at 289.000 kb on + strand at 289.001 kb on - strand at 289.001 kb on - strand at 289.001 kb on - strand at 289.034 kb on - strand, within IAI47_01340 at 289.034 kb on - strand, within IAI47_01340 at 289.108 kb on + strand, within IAI47_01340 at 289.109 kb on - strand, within IAI47_01340 at 289.163 kb on + strand, within IAI47_01340 at 289.164 kb on - strand, within IAI47_01340 at 289.176 kb on + strand, within IAI47_01340 at 289.177 kb on - strand, within IAI47_01340 at 289.210 kb on + strand, within IAI47_01340 at 289.210 kb on + strand, within IAI47_01340 at 289.211 kb on - strand, within IAI47_01340 at 289.211 kb on - strand, within IAI47_01340 at 289.245 kb on + strand, within IAI47_01340 at 289.245 kb on + strand, within IAI47_01340 at 289.263 kb on + strand, within IAI47_01340 at 289.360 kb on + strand, within IAI47_01340 at 289.360 kb on + strand, within IAI47_01340 at 289.393 kb on - strand, within IAI47_01340 at 289.473 kb on + strand, within IAI47_01340 at 289.473 kb on + strand, within IAI47_01340 at 289.473 kb on + strand, within IAI47_01340 at 289.473 kb on + strand, within IAI47_01340 at 289.474 kb on - strand, within IAI47_01340 at 289.474 kb on - strand, within IAI47_01340 at 289.474 kb on - strand, within IAI47_01340 at 289.474 kb on - strand, within IAI47_01340 at 289.474 kb on - strand, within IAI47_01340 at 289.476 kb on + strand, within IAI47_01340 at 289.476 kb on + strand, within IAI47_01340 at 289.477 kb on - strand, within IAI47_01340 at 289.477 kb on - strand, within IAI47_01340 at 289.477 kb on - strand, within IAI47_01340 at 289.521 kb on + strand, within IAI47_01340 at 289.522 kb on - strand, within IAI47_01340 at 289.561 kb on + strand, within IAI47_01340 at 289.561 kb on + strand, within IAI47_01340 at 289.562 kb on - strand, within IAI47_01340 at 289.562 kb on - strand, within IAI47_01340 at 289.562 kb on - strand, within IAI47_01340 at 289.562 kb on - strand, within IAI47_01340 at 289.581 kb on + strand, within IAI47_01340 at 289.581 kb on + strand, within IAI47_01340 at 289.581 kb on + strand, within IAI47_01340 at 289.582 kb on - strand, within IAI47_01340 at 289.582 kb on - strand, within IAI47_01340 at 289.650 kb on + strand, within IAI47_01340 at 289.753 kb on - strand at 289.781 kb on + strand at 289.781 kb on + strand at 289.784 kb on - strand at 289.791 kb on + strand at 289.812 kb on - strand at 289.820 kb on + strand at 289.820 kb on + strand at 289.820 kb on + strand at 289.820 kb on + strand at 289.821 kb on - strand at 289.821 kb on - strand at 289.821 kb on - strand at 289.821 kb on - strand at 289.821 kb on - strand at 289.832 kb on + strand at 289.832 kb on + strand at 289.832 kb on + strand at 289.832 kb on + strand at 289.832 kb on + strand at 289.832 kb on + strand at 289.832 kb on + strand at 289.833 kb on - strand at 289.833 kb on - strand at 289.833 kb on - strand at 289.833 kb on - strand at 289.833 kb on - strand at 289.833 kb on - strand at 289.833 kb on - strand at 289.833 kb on - strand at 289.833 kb on - strand at 289.835 kb on + strand at 289.890 kb on + strand at 289.890 kb on + strand at 289.890 kb on + strand at 289.890 kb on + strand at 289.890 kb on + strand at 289.891 kb on - strand at 289.892 kb on + strand at 289.892 kb on + strand at 289.892 kb on + strand at 289.893 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1 remove 287,101 - -0.4 287,101 - +0.5 287,136 + +2.1 287,136 + -1.9 287,137 - +0.2 287,144 + -0.8 287,144 + +0.6 287,145 - -0.2 287,145 - +0.0 287,145 - +0.2 287,145 - +0.8 287,145 - +0.6 287,145 - +0.3 287,145 - -0.1 287,145 - +0.8 287,147 + -2.0 287,147 + +0.2 287,148 - +0.0 287,148 - +1.2 287,149 - -2.0 287,171 + +0.2 287,171 + -1.0 287,172 - -0.2 287,183 + -0.7 287,183 + -1.1 287,183 + +0.8 287,183 + -0.0 287,183 + +1.8 287,183 + +0.5 287,183 + +0.2 287,184 - -2.0 287,184 - -0.4 287,184 - -0.5 287,184 - -0.0 287,184 - -0.2 287,184 - -1.2 287,184 - -0.7 287,184 - +1.0 287,184 - +1.8 287,195 + -0.1 287,196 - -1.0 287,196 - +0.5 287,237 + +0.8 287,237 + -0.0 287,237 + -0.2 287,237 + +0.9 287,237 + -0.2 287,238 - +1.6 287,238 - -0.5 287,238 - +1.0 287,238 - -0.3 287,258 + +1.5 287,259 - -0.7 287,314 + IAI47_01330 0.14 -0.8 287,314 + IAI47_01330 0.14 -0.5 287,314 + IAI47_01330 0.14 +0.8 287,315 - IAI47_01330 0.14 -0.0 287,315 - IAI47_01330 0.14 -1.6 287,322 - IAI47_01330 0.15 -0.0 287,363 + IAI47_01330 0.19 -0.0 287,364 - IAI47_01330 0.19 +0.3 287,387 + IAI47_01330 0.22 +0.5 287,388 - IAI47_01330 0.22 +1.0 287,407 + IAI47_01330 0.24 +1.3 287,407 + IAI47_01330 0.24 +0.8 287,454 + IAI47_01330 0.29 +0.7 287,454 + IAI47_01330 0.29 +1.8 287,454 + IAI47_01330 0.29 +0.1 287,454 + IAI47_01330 0.29 +0.4 287,455 - IAI47_01330 0.29 +0.3 287,455 - IAI47_01330 0.29 +1.0 287,455 - IAI47_01330 0.29 +1.8 287,470 + IAI47_01330 0.31 +0.8 287,511 + IAI47_01330 0.36 -0.6 287,511 + IAI47_01330 0.36 -0.9 287,511 + IAI47_01330 0.36 -0.5 287,511 + IAI47_01330 0.36 -0.1 287,512 - IAI47_01330 0.36 -0.2 287,769 + IAI47_01330 0.64 +1.4 287,769 + IAI47_01330 0.64 -0.8 287,770 - IAI47_01330 0.64 -0.5 287,770 - IAI47_01330 0.64 -0.6 287,770 - IAI47_01330 0.64 -0.9 287,770 - IAI47_01330 0.64 +0.3 287,770 - IAI47_01330 0.64 +0.8 288,004 - IAI47_01330 0.90 +0.3 288,086 - -1.1 288,086 - +0.4 288,086 - -1.5 288,096 + +0.0 288,096 + +0.6 288,097 - +0.0 288,114 + +0.3 288,114 + +0.2 288,115 - -1.0 288,118 + +0.0 288,118 + -0.0 288,118 + -1.2 288,118 + -1.1 288,119 - +0.0 288,119 - -0.5 288,119 - +0.0 288,142 + +1.0 288,204 + IAI47_01335 0.13 +1.3 288,205 - IAI47_01335 0.13 +1.9 288,230 + IAI47_01335 0.16 +0.4 288,230 + IAI47_01335 0.16 +0.4 288,256 + IAI47_01335 0.20 +0.1 288,256 + IAI47_01335 0.20 +2.0 288,257 - IAI47_01335 0.20 -0.0 288,257 - IAI47_01335 0.20 +0.9 288,337 - IAI47_01335 0.30 +2.0 288,391 + IAI47_01335 0.36 +0.3 288,454 + IAI47_01335 0.44 +0.2 288,454 + IAI47_01335 0.44 +0.3 288,455 - IAI47_01335 0.44 +0.4 288,455 - IAI47_01335 0.44 -0.4 288,580 + IAI47_01335 0.59 +1.3 288,656 - IAI47_01335 0.68 +0.6 288,704 + IAI47_01335 0.74 -0.7 288,819 + IAI47_01335 0.88 +0.5 288,819 + IAI47_01335 0.88 -1.1 288,819 + IAI47_01335 0.88 +1.1 288,846 - -0.2 288,854 + -0.7 288,921 + -0.9 288,922 - -3.4 288,941 + +0.1 288,942 - -0.8 288,948 + -0.2 288,949 - -0.4 288,949 - +0.4 289,000 + -1.5 289,000 + -0.8 289,000 + -1.3 289,001 - -2.0 289,001 - -1.1 289,001 - +0.5 289,034 - IAI47_01340 0.14 +0.0 289,034 - IAI47_01340 0.14 +0.5 289,108 + IAI47_01340 0.22 +0.8 289,109 - IAI47_01340 0.22 +0.6 289,163 + IAI47_01340 0.29 +0.3 289,164 - IAI47_01340 0.29 -0.1 289,176 + IAI47_01340 0.30 -0.2 289,177 - IAI47_01340 0.30 +0.8 289,210 + IAI47_01340 0.34 +0.2 289,210 + IAI47_01340 0.34 +0.0 289,211 - IAI47_01340 0.35 -0.3 289,211 - IAI47_01340 0.35 +0.6 289,245 + IAI47_01340 0.39 -0.4 289,245 + IAI47_01340 0.39 -1.4 289,263 + IAI47_01340 0.41 -1.1 289,360 + IAI47_01340 0.52 +0.8 289,360 + IAI47_01340 0.52 +0.8 289,393 - IAI47_01340 0.56 -0.4 289,473 + IAI47_01340 0.66 +0.4 289,473 + IAI47_01340 0.66 -0.4 289,473 + IAI47_01340 0.66 -2.6 289,473 + IAI47_01340 0.66 -0.2 289,474 - IAI47_01340 0.66 -0.1 289,474 - IAI47_01340 0.66 +0.6 289,474 - IAI47_01340 0.66 +1.8 289,474 - IAI47_01340 0.66 +1.8 289,474 - IAI47_01340 0.66 -0.3 289,476 + IAI47_01340 0.66 -1.1 289,476 + IAI47_01340 0.66 +0.2 289,477 - IAI47_01340 0.66 +0.9 289,477 - IAI47_01340 0.66 +0.3 289,477 - IAI47_01340 0.66 +0.2 289,521 + IAI47_01340 0.71 -0.5 289,522 - IAI47_01340 0.71 -1.0 289,561 + IAI47_01340 0.76 +1.1 289,561 + IAI47_01340 0.76 -0.1 289,562 - IAI47_01340 0.76 +0.3 289,562 - IAI47_01340 0.76 +0.3 289,562 - IAI47_01340 0.76 -0.4 289,562 - IAI47_01340 0.76 -0.7 289,581 + IAI47_01340 0.78 +0.5 289,581 + IAI47_01340 0.78 +1.6 289,581 + IAI47_01340 0.78 +0.6 289,582 - IAI47_01340 0.79 -1.2 289,582 - IAI47_01340 0.79 -0.6 289,650 + IAI47_01340 0.87 -0.4 289,753 - +1.5 289,781 + +1.0 289,781 + +0.3 289,784 - -0.2 289,791 + -0.7 289,812 - +0.3 289,820 + +0.1 289,820 + -0.5 289,820 + +0.1 289,820 + +1.3 289,821 - -1.2 289,821 - -0.3 289,821 - -0.4 289,821 - +0.2 289,821 - +0.8 289,832 + -0.8 289,832 + -0.1 289,832 + +1.2 289,832 + -0.7 289,832 + -0.2 289,832 + +2.8 289,832 + +1.2 289,833 - +0.6 289,833 - +0.6 289,833 - -0.5 289,833 - -0.1 289,833 - -0.1 289,833 - +0.3 289,833 - +0.4 289,833 - +0.2 289,833 - -0.7 289,835 + +1.3 289,890 + -0.2 289,890 + +0.1 289,890 + +0.8 289,890 + -0.2 289,890 + +0.8 289,891 - +0.0 289,892 + +0.8 289,892 + -0.1 289,892 + +1.6 289,893 - -0.5
Or see this region's nucleotide sequence