Strain Fitness in Pantoea sp. MT58 around IAI47_00745

Experiment: Ying_all64 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_00740 and IAI47_00745 are separated by 68 nucleotidesIAI47_00745 and IAI47_00750 overlap by 4 nucleotidesIAI47_00750 and IAI47_00755 are separated by 35 nucleotides IAI47_00740: IAI47_00740 - NAD(P)H-dependent glycerol-3-phosphate dehydrogenase, at 158,000 to 159,016 _00740 IAI47_00745: IAI47_00745 - serine O-acetyltransferase, at 159,085 to 159,906 _00745 IAI47_00750: IAI47_00750 - tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL, at 159,903 to 160,376 _00750 IAI47_00755: IAI47_00755 - envelope stress sensor histidine kinase CpxA, at 160,412 to 161,791 _00755 Position (kb) 159 160Strain fitness (log2 ratio) -2 -1 0 1 2 3at 159.028 kb on + strandat 159.037 kb on + strandat 159.037 kb on + strandat 159.037 kb on + strandat 159.037 kb on + strandat 159.101 kb on + strandat 159.101 kb on + strandat 159.849 kb on + strandat 159.849 kb on + strandat 159.849 kb on + strandat 159.849 kb on + strandat 159.850 kb on - strandat 159.904 kb on + strandat 159.904 kb on + strandat 159.904 kb on + strandat 159.904 kb on + strandat 159.904 kb on + strandat 159.905 kb on - strandat 159.905 kb on - strandat 159.905 kb on - strandat 159.905 kb on - strandat 159.928 kb on + strandat 159.952 kb on + strand, within IAI47_00750at 159.953 kb on - strand, within IAI47_00750at 159.953 kb on - strand, within IAI47_00750at 159.953 kb on - strand, within IAI47_00750at 159.966 kb on + strand, within IAI47_00750at 159.966 kb on + strand, within IAI47_00750at 159.966 kb on + strand, within IAI47_00750at 159.987 kb on - strand, within IAI47_00750at 160.090 kb on + strand, within IAI47_00750at 160.091 kb on - strand, within IAI47_00750at 160.105 kb on + strand, within IAI47_00750at 160.189 kb on + strand, within IAI47_00750at 160.189 kb on + strand, within IAI47_00750at 160.190 kb on - strand, within IAI47_00750at 160.190 kb on - strand, within IAI47_00750at 160.190 kb on - strand, within IAI47_00750at 160.190 kb on - strand, within IAI47_00750at 160.226 kb on - strand, within IAI47_00750at 160.245 kb on + strand, within IAI47_00750at 160.246 kb on - strand, within IAI47_00750at 160.246 kb on - strand, within IAI47_00750at 160.246 kb on - strand, within IAI47_00750at 160.325 kb on + strand, within IAI47_00750at 160.325 kb on + strand, within IAI47_00750at 160.325 kb on + strand, within IAI47_00750at 160.325 kb on + strand, within IAI47_00750at 160.325 kb on + strand, within IAI47_00750at 160.325 kb on + strand, within IAI47_00750at 160.325 kb on + strand, within IAI47_00750at 160.326 kb on - strand, within IAI47_00750at 160.326 kb on - strand, within IAI47_00750at 160.326 kb on - strand, within IAI47_00750at 160.326 kb on - strand, within IAI47_00750at 160.326 kb on - strand, within IAI47_00750at 160.326 kb on - strand, within IAI47_00750at 160.326 kb on - strand, within IAI47_00750at 160.334 kb on + strandat 160.370 kb on + strandat 160.370 kb on + strandat 160.370 kb on + strandat 160.370 kb on + strandat 160.370 kb on + strandat 160.370 kb on + strandat 160.371 kb on - strandat 160.371 kb on - strandat 160.371 kb on - strandat 160.376 kb on + strandat 160.376 kb on + strandat 160.376 kb on + strandat 160.376 kb on + strandat 160.377 kb on - strandat 160.377 kb on - strandat 160.377 kb on - strandat 160.377 kb on - strandat 160.377 kb on - strandat 160.406 kb on - strandat 160.406 kb on - strandat 160.406 kb on - strandat 160.414 kb on - strandat 160.431 kb on + strandat 160.431 kb on + strandat 160.431 kb on + strandat 160.466 kb on + strandat 160.486 kb on + strandat 160.486 kb on + strandat 160.487 kb on - strandat 160.582 kb on - strand, within IAI47_00755at 160.663 kb on + strand, within IAI47_00755at 160.664 kb on - strand, within IAI47_00755at 160.701 kb on + strand, within IAI47_00755at 160.723 kb on + strand, within IAI47_00755at 160.723 kb on + strand, within IAI47_00755at 160.724 kb on - strand, within IAI47_00755at 160.761 kb on + strand, within IAI47_00755at 160.761 kb on + strand, within IAI47_00755at 160.762 kb on - strand, within IAI47_00755at 160.762 kb on - strand, within IAI47_00755at 160.858 kb on + strand, within IAI47_00755at 160.894 kb on + strand, within IAI47_00755at 160.895 kb on - strand, within IAI47_00755at 160.895 kb on - strand, within IAI47_00755

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1
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159,028 + -0.8
159,037 + +1.5
159,037 + +1.1
159,037 + -0.2
159,037 + +1.0
159,101 + -0.8
159,101 + -1.1
159,849 + +0.4
159,849 + -0.1
159,849 + -0.8
159,849 + -1.0
159,850 - +0.4
159,904 + +0.4
159,904 + -0.8
159,904 + -1.8
159,904 + -1.0
159,904 + +0.4
159,905 - +0.5
159,905 - +0.8
159,905 - -0.4
159,905 - +0.3
159,928 + +0.2
159,952 + IAI47_00750 0.10 -2.1
159,953 - IAI47_00750 0.11 +0.8
159,953 - IAI47_00750 0.11 -0.8
159,953 - IAI47_00750 0.11 -0.4
159,966 + IAI47_00750 0.13 +0.9
159,966 + IAI47_00750 0.13 +0.2
159,966 + IAI47_00750 0.13 -0.2
159,987 - IAI47_00750 0.18 -0.5
160,090 + IAI47_00750 0.39 +0.9
160,091 - IAI47_00750 0.40 +0.2
160,105 + IAI47_00750 0.43 -0.2
160,189 + IAI47_00750 0.60 -1.0
160,189 + IAI47_00750 0.60 -0.1
160,190 - IAI47_00750 0.61 -0.9
160,190 - IAI47_00750 0.61 +0.1
160,190 - IAI47_00750 0.61 -0.8
160,190 - IAI47_00750 0.61 -0.2
160,226 - IAI47_00750 0.68 +0.8
160,245 + IAI47_00750 0.72 +1.1
160,246 - IAI47_00750 0.72 -0.9
160,246 - IAI47_00750 0.72 -2.0
160,246 - IAI47_00750 0.72 -0.7
160,325 + IAI47_00750 0.89 -0.6
160,325 + IAI47_00750 0.89 -0.3
160,325 + IAI47_00750 0.89 +0.1
160,325 + IAI47_00750 0.89 -0.7
160,325 + IAI47_00750 0.89 +0.4
160,325 + IAI47_00750 0.89 -0.2
160,325 + IAI47_00750 0.89 -0.1
160,326 - IAI47_00750 0.89 +0.5
160,326 - IAI47_00750 0.89 +0.8
160,326 - IAI47_00750 0.89 -0.5
160,326 - IAI47_00750 0.89 -0.1
160,326 - IAI47_00750 0.89 -0.7
160,326 - IAI47_00750 0.89 -1.2
160,326 - IAI47_00750 0.89 -0.7
160,334 + +0.4
160,370 + +0.2
160,370 + +0.7
160,370 + -0.2
160,370 + -0.2
160,370 + -0.2
160,370 + +0.2
160,371 - -0.2
160,371 - -1.2
160,371 - -0.2
160,376 + -0.1
160,376 + +2.4
160,376 + -0.5
160,376 + -0.5
160,377 - -0.2
160,377 - -0.2
160,377 - -0.9
160,377 - +0.2
160,377 - -0.8
160,406 - +0.1
160,406 - +1.1
160,406 - -0.4
160,414 - -0.4
160,431 + +0.2
160,431 + +1.8
160,431 + +0.7
160,466 + +0.1
160,486 + +0.8
160,486 + +0.4
160,487 - -0.2
160,582 - IAI47_00755 0.12 -1.2
160,663 + IAI47_00755 0.18 +1.8
160,664 - IAI47_00755 0.18 -0.4
160,701 + IAI47_00755 0.21 +0.2
160,723 + IAI47_00755 0.23 -0.6
160,723 + IAI47_00755 0.23 +2.8
160,724 - IAI47_00755 0.23 +0.8
160,761 + IAI47_00755 0.25 +0.8
160,761 + IAI47_00755 0.25 -2.4
160,762 - IAI47_00755 0.25 +0.5
160,762 - IAI47_00755 0.25 +0.2
160,858 + IAI47_00755 0.32 -0.6
160,894 + IAI47_00755 0.35 +1.1
160,895 - IAI47_00755 0.35 +0.5
160,895 - IAI47_00755 0.35 +0.0

Or see this region's nucleotide sequence