Strain Fitness in Pantoea sp. MT58 around IAI47_00435

Experiment: Ying_all64 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 1
96,227	-		IAI47_00430	0.82	-1.8
96,227	-		IAI47_00430	0.82	-0.8
96,227	-		IAI47_00430	0.82	+0.8
96,231	+		IAI47_00430	0.82	-2.2
96,231	+		IAI47_00430	0.82	-1.0
96,231	+		IAI47_00430	0.82	+0.2
96,232	-		IAI47_00430	0.82	+0.2
96,289	+		IAI47_00430	0.84	-2.6
96,289	+		IAI47_00430	0.84	+0.8
96,289	+		IAI47_00430	0.84	+0.3
96,289	+		IAI47_00430	0.84	-0.2
96,291	+		IAI47_00430	0.85	-1.6
96,292	-		IAI47_00430	0.85	+0.0
96,292	-		IAI47_00430	0.85	+1.8
96,301	+		IAI47_00430	0.85	-1.4
96,301	+		IAI47_00430	0.85	+0.4
96,301	+		IAI47_00430	0.85	-0.6
96,301	+		IAI47_00430	0.85	+0.0
96,302	-		IAI47_00430	0.85	+0.8
96,323	+		IAI47_00430	0.86	-0.8
96,331	+		IAI47_00430	0.86	+1.0
96,332	-		IAI47_00430	0.86	-1.7
96,332	-		IAI47_00430	0.86	-0.8
96,332	-		IAI47_00430	0.86	+0.1
96,333	+		IAI47_00430	0.86	+1.4
96,333	+		IAI47_00430	0.86	-0.2
96,334	-		IAI47_00430	0.86	-1.9
96,370	+		IAI47_00430	0.87	+1.0
96,371	-		IAI47_00430	0.87	-2.0
96,411	+		IAI47_00430	0.89	-0.6
96,414	+		IAI47_00430	0.89	+1.5
96,414	+		IAI47_00430	0.89	-0.4
96,492	+				+0.2
96,492	+				-0.6
96,492	+				+0.6
96,495	+				+0.0
96,496	-				-0.8
96,587	+				+0.8
96,651	+				-1.0
96,651	+				+0.4
96,652	-				+0.0
96,675	-				-0.5
96,696	+				+1.6
96,696	+				-0.6
96,699	+				-1.1
96,744	+				+0.1
96,772	+				+0.4
96,772	+				+0.4
96,772	+				+1.4
96,772	+				+0.6
96,772	+				+0.3
96,772	+				+0.0
96,772	+				+0.4
96,772	+				+1.8
96,773	-				+0.4
96,773	-				+0.6
96,773	-				-2.2
96,773	-				-1.1
96,773	-				+0.8
96,773	-				-1.5
96,776	+				-1.0
96,776	+				-0.0
96,776	+				-0.6
96,777	-				-0.5
96,777	-				-0.9
96,777	-				-0.2
96,777	-				-1.1
96,785	+				-1.7
96,786	-				-0.4
96,786	-				-0.2
96,786	-				+1.0
96,786	-				+0.9
96,816	+				+0.5
96,853	-				+0.1
96,877	-				+1.5
96,930	+				+0.8
96,930	+				-0.2
96,930	+				+2.0
96,930	+				+1.4
96,930	+				+2.4
96,930	+				-0.9
96,931	-				+1.2
96,931	-				-0.6
96,931	-				+1.0
96,931	-				+0.2
96,934	+				+0.8
96,934	+				-0.8
96,934	+				+0.1
96,934	+				-1.6
96,934	+				-0.0
96,934	+				+0.5
96,934	+				-0.7
96,935	-				-1.0
96,935	-				+0.6
96,935	-				-0.4
96,935	-				+0.8
96,935	-				-0.8
96,935	-				+0.6
96,935	-				-0.3
96,974	+				+1.2
96,975	-				-1.7
96,988	+				+0.8
97,001	+				-2.3
97,001	+				-0.3
97,001	+				-0.4
97,001	+				+0.5
97,002	-				-0.7
97,002	-				+1.0
97,002	-				-0.6
97,011	+				-0.8
97,011	+				-0.8
97,011	+				-1.0
97,011	+				-0.4
97,027	+				-2.2
97,027	+				-2.3
97,028	-				+1.1
97,028	-				-1.0
97,036	+				+0.7
97,036	+				-1.2
97,092	+				-0.5
97,797	-				+0.5
97,797	-				-0.9
97,815	-				+1.0
97,816	+				-0.2
97,816	+				-0.2
97,817	-				+1.4
97,817	-				-1.6
97,817	-				+0.4
97,817	-				-0.9
97,854	+				+0.0
97,854	+				+0.1
97,867	-				-0.2
97,881	+				-1.2
97,882	-				-1.1
97,882	-				-0.7
97,895	-				-0.2
97,915	+				+0.4
97,916	-				-0.3
97,942	-				-0.5
97,949	+				-0.7
97,950	-				-2.0
97,950	-				-0.5
97,975	+				-0.0
97,979	+				+0.8
97,980	-				+0.1
97,980	-				+0.2
97,980	-				+0.6
97,980	-				-1.0
97,980	-				-0.6
97,980	-				+0.1
97,980	-				+0.8
97,980	-				+0.2
98,017	+				+0.2
98,018	-				-1.8
98,018	-				-0.1
98,022	+				-0.3
98,023	-				+0.9
98,023	-				-0.8
98,023	-				-0.2
98,023	-				-0.6
98,023	-				-0.8
98,070	-				+1.0
98,080	+				+0.1
98,081	-				-0.5
98,081	-				+1.1
98,081	-				+0.2
98,081	-				+0.0
98,113	-				-0.7
98,175	+				-0.9
98,175	+				+0.2
98,175	+				-0.8
98,175	+				-0.4
98,175	+				-1.2
98,175	+				-0.8
98,176	-				+0.8
98,176	-				-1.1
98,176	-				-0.5
98,176	-				-0.2
98,176	-				+0.6
98,176	-				-0.2
98,193	+				-0.8
98,194	-				-0.8
98,194	-				+0.2
98,194	-				-1.0
98,211	+				+1.1
98,211	+				-0.4
98,211	+				+0.6
98,211	+				+0.1
98,211	+				-0.3
98,211	+				+1.3
98,212	-				-0.6
98,212	-				+1.9
98,212	-				-1.1
98,212	-				-0.6
98,219	+				+0.6
98,226	+				+0.3
98,226	+				+0.7
98,226	+				+0.3
98,227	-				+0.8
98,227	-				+0.8
98,274	+				-2.2
98,292	+				+0.4
98,292	+				+0.4
98,292	+				-1.7
98,292	+				+0.4
98,292	+				+0.4
98,293	-				+0.8
98,293	-				+1.5
98,294	+				+1.0
98,295	-				+0.2
98,295	-				-1.2
98,321	+				-1.2
98,321	+				+0.1
98,321	+				-0.4
98,321	+				+1.2
98,322	-				-0.8
98,322	-				+1.0
98,322	-				-1.2
98,322	-				-0.5
98,324	+				+0.8
98,324	+				+0.8
98,324	+				-0.4
98,324	+				-1.1
98,324	+				-0.1
98,324	+				-0.5
98,324	+				+0.8
98,324	+				+1.4
98,324	+				-0.5
98,324	+				+0.2
98,325	-				-0.7
98,325	-				-0.6
98,325	-				-0.6
98,325	-				+1.3
98,325	-				-0.6
98,325	-				-1.6
98,325	-				+0.3
98,325	-				-0.2
98,325	-				-1.2
98,325	-				+0.4
98,325	-				-0.2
98,392	-		IAI47_00440	0.13	-0.4
98,394	-		IAI47_00440	0.13	-1.0
98,394	-		IAI47_00440	0.13	-0.1
98,394	-		IAI47_00440	0.13	+1.4
98,426	+		IAI47_00440	0.19	+0.2
98,426	+		IAI47_00440	0.19	+1.1
98,426	+		IAI47_00440	0.19	+0.2
98,427	-		IAI47_00440	0.19	-1.2
98,463	-		IAI47_00440	0.26	-1.2
98,463	-		IAI47_00440	0.26	-0.0
98,463	-		IAI47_00440	0.26	-1.3
98,501	+		IAI47_00440	0.34	+1.0
98,501	+		IAI47_00440	0.34	+0.6
98,502	-		IAI47_00440	0.34	+0.8
98,502	-		IAI47_00440	0.34	-1.0
98,502	-		IAI47_00440	0.34	-1.2
98,502	-		IAI47_00440	0.34	-0.6
98,504	+		IAI47_00440	0.34	-0.3
98,504	+		IAI47_00440	0.34	-0.6
98,504	+		IAI47_00440	0.34	-0.3
98,505	-		IAI47_00440	0.34	-0.8
98,505	-		IAI47_00440	0.34	-1.2
98,531	+		IAI47_00440	0.39	+0.4
98,576	+		IAI47_00440	0.48	-1.5