Experiment: Ying_all64 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_00395 and IAI47_00400 are separated by 77 nucleotides IAI47_00400 and IAI47_00405 are separated by 85 nucleotides IAI47_00405 and IAI47_00410 are separated by 1 nucleotides
IAI47_00395: IAI47_00395 - 23S ribosomal RNA, at 87,258 to 90,192
_00395
IAI47_00400: IAI47_00400 - 5S ribosomal RNA, at 90,270 to 90,385
_00400
IAI47_00405: IAI47_00405 - molybdopterin-guanine dinucleotide biosynthesis protein B, at 90,471 to 90,977
_00405
IAI47_00410: IAI47_00410 - molybdenum cofactor guanylyltransferase MobA, at 90,979 to 91,545
_00410
Position (kb) 90
91 Strain fitness (log2 ratio) -2
-1
0
1
2 at 90.430 kb on + strand at 90.430 kb on + strand at 90.464 kb on - strand at 90.512 kb on + strand at 90.513 kb on - strand at 90.513 kb on - strand at 90.513 kb on - strand at 90.525 kb on + strand, within IAI47_00405 at 90.525 kb on + strand, within IAI47_00405 at 90.526 kb on - strand, within IAI47_00405 at 90.526 kb on - strand, within IAI47_00405 at 90.526 kb on - strand, within IAI47_00405 at 90.631 kb on - strand, within IAI47_00405 at 90.641 kb on + strand, within IAI47_00405 at 90.642 kb on - strand, within IAI47_00405 at 90.645 kb on + strand, within IAI47_00405 at 90.645 kb on + strand, within IAI47_00405 at 90.659 kb on + strand, within IAI47_00405 at 90.660 kb on - strand, within IAI47_00405 at 90.660 kb on - strand, within IAI47_00405 at 90.660 kb on - strand, within IAI47_00405 at 90.676 kb on - strand, within IAI47_00405 at 90.676 kb on - strand, within IAI47_00405 at 90.676 kb on - strand, within IAI47_00405 at 90.676 kb on - strand, within IAI47_00405 at 90.676 kb on - strand, within IAI47_00405 at 90.701 kb on + strand, within IAI47_00405 at 90.701 kb on + strand, within IAI47_00405 at 90.702 kb on - strand, within IAI47_00405 at 90.715 kb on + strand, within IAI47_00405 at 90.715 kb on + strand, within IAI47_00405 at 90.715 kb on + strand, within IAI47_00405 at 90.715 kb on + strand, within IAI47_00405 at 90.715 kb on + strand, within IAI47_00405 at 90.716 kb on - strand, within IAI47_00405 at 90.716 kb on - strand, within IAI47_00405 at 90.716 kb on - strand, within IAI47_00405 at 90.716 kb on - strand, within IAI47_00405 at 90.716 kb on - strand, within IAI47_00405 at 90.716 kb on - strand, within IAI47_00405 at 90.716 kb on - strand, within IAI47_00405 at 90.716 kb on - strand, within IAI47_00405 at 90.817 kb on + strand, within IAI47_00405 at 90.817 kb on + strand, within IAI47_00405 at 90.817 kb on + strand, within IAI47_00405 at 90.817 kb on + strand, within IAI47_00405 at 90.817 kb on + strand, within IAI47_00405 at 90.817 kb on + strand, within IAI47_00405 at 90.817 kb on + strand, within IAI47_00405 at 90.817 kb on + strand, within IAI47_00405 at 90.817 kb on + strand, within IAI47_00405 at 90.817 kb on + strand, within IAI47_00405 at 90.817 kb on + strand, within IAI47_00405 at 90.817 kb on + strand, within IAI47_00405 at 90.818 kb on - strand, within IAI47_00405 at 90.818 kb on - strand, within IAI47_00405 at 90.818 kb on - strand, within IAI47_00405 at 90.818 kb on - strand, within IAI47_00405 at 90.818 kb on - strand, within IAI47_00405 at 90.818 kb on - strand, within IAI47_00405 at 90.818 kb on - strand, within IAI47_00405 at 90.818 kb on - strand, within IAI47_00405 at 90.821 kb on + strand, within IAI47_00405 at 90.821 kb on + strand, within IAI47_00405 at 90.821 kb on + strand, within IAI47_00405 at 90.821 kb on + strand, within IAI47_00405 at 90.821 kb on + strand, within IAI47_00405 at 90.821 kb on + strand, within IAI47_00405 at 90.821 kb on + strand, within IAI47_00405 at 90.821 kb on + strand, within IAI47_00405 at 90.821 kb on + strand, within IAI47_00405 at 90.822 kb on - strand, within IAI47_00405 at 90.822 kb on - strand, within IAI47_00405 at 90.822 kb on - strand, within IAI47_00405 at 90.822 kb on - strand, within IAI47_00405 at 90.822 kb on - strand, within IAI47_00405 at 90.822 kb on - strand, within IAI47_00405 at 90.822 kb on - strand, within IAI47_00405 at 90.822 kb on - strand, within IAI47_00405 at 90.822 kb on - strand, within IAI47_00405 at 90.822 kb on - strand, within IAI47_00405 at 90.822 kb on - strand, within IAI47_00405 at 90.822 kb on - strand, within IAI47_00405 at 90.827 kb on + strand, within IAI47_00405 at 90.827 kb on + strand, within IAI47_00405 at 90.828 kb on - strand, within IAI47_00405 at 90.866 kb on + strand, within IAI47_00405 at 90.866 kb on + strand, within IAI47_00405 at 90.866 kb on + strand, within IAI47_00405 at 90.866 kb on + strand, within IAI47_00405 at 90.866 kb on + strand, within IAI47_00405 at 90.866 kb on + strand, within IAI47_00405 at 90.867 kb on - strand, within IAI47_00405 at 90.867 kb on - strand, within IAI47_00405 at 90.890 kb on + strand, within IAI47_00405 at 90.890 kb on + strand, within IAI47_00405 at 90.918 kb on + strand, within IAI47_00405 at 90.918 kb on + strand, within IAI47_00405 at 90.932 kb on + strand at 90.933 kb on - strand at 90.963 kb on + strand at 90.963 kb on + strand at 90.963 kb on + strand at 90.963 kb on + strand at 90.963 kb on + strand at 90.963 kb on + strand at 90.964 kb on - strand at 90.964 kb on - strand at 90.964 kb on - strand at 90.970 kb on - strand at 90.977 kb on + strand at 90.977 kb on + strand at 90.977 kb on + strand at 90.977 kb on + strand at 90.977 kb on + strand at 90.977 kb on + strand at 90.977 kb on + strand at 90.977 kb on + strand at 90.977 kb on + strand at 90.977 kb on + strand at 90.977 kb on + strand at 90.977 kb on + strand at 90.977 kb on + strand at 90.977 kb on + strand at 90.977 kb on + strand at 90.977 kb on + strand at 90.977 kb on + strand at 90.978 kb on - strand at 90.978 kb on - strand at 90.978 kb on - strand at 90.978 kb on - strand at 90.978 kb on - strand at 90.978 kb on - strand at 90.978 kb on - strand at 90.978 kb on - strand at 90.978 kb on - strand at 90.978 kb on - strand at 90.978 kb on - strand at 90.978 kb on - strand at 90.978 kb on - strand at 91.008 kb on + strand at 91.008 kb on + strand at 91.008 kb on + strand at 91.008 kb on + strand at 91.008 kb on + strand at 91.009 kb on - strand at 91.011 kb on + strand at 91.011 kb on + strand at 91.011 kb on + strand at 91.012 kb on - strand at 91.012 kb on - strand at 91.012 kb on - strand at 91.012 kb on - strand at 91.012 kb on - strand at 91.012 kb on - strand at 91.012 kb on - strand at 91.012 kb on - strand at 91.012 kb on - strand at 91.012 kb on - strand at 91.012 kb on - strand at 91.014 kb on + strand at 91.015 kb on - strand at 91.015 kb on - strand at 91.015 kb on - strand at 91.015 kb on - strand at 91.015 kb on - strand at 91.048 kb on + strand, within IAI47_00410 at 91.048 kb on + strand, within IAI47_00410 at 91.048 kb on + strand, within IAI47_00410 at 91.049 kb on - strand, within IAI47_00410 at 91.083 kb on + strand, within IAI47_00410 at 91.083 kb on + strand, within IAI47_00410 at 91.083 kb on + strand, within IAI47_00410 at 91.083 kb on + strand, within IAI47_00410 at 91.084 kb on - strand, within IAI47_00410 at 91.084 kb on - strand, within IAI47_00410 at 91.084 kb on - strand, within IAI47_00410 at 91.084 kb on - strand, within IAI47_00410 at 91.084 kb on - strand, within IAI47_00410 at 91.084 kb on - strand, within IAI47_00410 at 91.084 kb on - strand, within IAI47_00410 at 91.084 kb on - strand, within IAI47_00410 at 91.084 kb on - strand, within IAI47_00410 at 91.084 kb on - strand, within IAI47_00410 at 91.109 kb on + strand, within IAI47_00410 at 91.109 kb on + strand, within IAI47_00410 at 91.110 kb on - strand, within IAI47_00410 at 91.110 kb on - strand, within IAI47_00410 at 91.110 kb on - strand, within IAI47_00410 at 91.110 kb on - strand, within IAI47_00410 at 91.115 kb on + strand, within IAI47_00410 at 91.115 kb on + strand, within IAI47_00410 at 91.115 kb on + strand, within IAI47_00410 at 91.115 kb on + strand, within IAI47_00410 at 91.115 kb on + strand, within IAI47_00410 at 91.116 kb on - strand, within IAI47_00410 at 91.116 kb on - strand, within IAI47_00410 at 91.116 kb on - strand, within IAI47_00410 at 91.116 kb on - strand, within IAI47_00410 at 91.131 kb on + strand, within IAI47_00410 at 91.131 kb on + strand, within IAI47_00410 at 91.131 kb on + strand, within IAI47_00410 at 91.131 kb on + strand, within IAI47_00410 at 91.132 kb on - strand, within IAI47_00410 at 91.233 kb on + strand, within IAI47_00410 at 91.234 kb on - strand, within IAI47_00410 at 91.251 kb on + strand, within IAI47_00410 at 91.251 kb on + strand, within IAI47_00410 at 91.251 kb on + strand, within IAI47_00410 at 91.252 kb on - strand, within IAI47_00410 at 91.252 kb on - strand, within IAI47_00410 at 91.252 kb on - strand at 91.304 kb on + strand, within IAI47_00410 at 91.304 kb on + strand, within IAI47_00410 at 91.304 kb on + strand, within IAI47_00410 at 91.304 kb on + strand, within IAI47_00410 at 91.304 kb on + strand, within IAI47_00410 at 91.304 kb on + strand, within IAI47_00410 at 91.304 kb on + strand, within IAI47_00410 at 91.304 kb on + strand, within IAI47_00410 at 91.305 kb on - strand, within IAI47_00410 at 91.305 kb on - strand, within IAI47_00410 at 91.305 kb on - strand, within IAI47_00410 at 91.305 kb on - strand, within IAI47_00410 at 91.305 kb on - strand, within IAI47_00410 at 91.305 kb on - strand, within IAI47_00410 at 91.305 kb on - strand, within IAI47_00410 at 91.305 kb on - strand, within IAI47_00410 at 91.305 kb on - strand, within IAI47_00410 at 91.309 kb on - strand, within IAI47_00410 at 91.309 kb on - strand, within IAI47_00410 at 91.329 kb on - strand, within IAI47_00410 at 91.335 kb on - strand, within IAI47_00410 at 91.356 kb on + strand, within IAI47_00410 at 91.356 kb on + strand, within IAI47_00410 at 91.356 kb on + strand, within IAI47_00410 at 91.357 kb on - strand, within IAI47_00410 at 91.357 kb on - strand, within IAI47_00410 at 91.357 kb on - strand, within IAI47_00410 at 91.366 kb on + strand, within IAI47_00410 at 91.367 kb on - strand, within IAI47_00410 at 91.374 kb on - strand, within IAI47_00410 at 91.374 kb on - strand, within IAI47_00410 at 91.374 kb on - strand, within IAI47_00410 at 91.383 kb on + strand, within IAI47_00410 at 91.383 kb on + strand, within IAI47_00410 at 91.383 kb on + strand, within IAI47_00410 at 91.384 kb on - strand, within IAI47_00410 at 91.384 kb on - strand, within IAI47_00410
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1 remove 90,430 + -0.2 90,430 + -0.2 90,464 - +0.6 90,512 + +0.3 90,513 - +0.5 90,513 - +0.4 90,513 - -0.8 90,525 + IAI47_00405 0.11 +0.9 90,525 + IAI47_00405 0.11 +1.1 90,526 - IAI47_00405 0.11 -1.4 90,526 - IAI47_00405 0.11 +0.5 90,526 - IAI47_00405 0.11 -0.2 90,631 - IAI47_00405 0.32 -0.2 90,641 + IAI47_00405 0.34 +0.8 90,642 - IAI47_00405 0.34 -0.2 90,645 + IAI47_00405 0.34 +0.6 90,645 + IAI47_00405 0.34 +1.4 90,659 + IAI47_00405 0.37 +0.8 90,660 - IAI47_00405 0.37 +1.0 90,660 - IAI47_00405 0.37 +0.4 90,660 - IAI47_00405 0.37 -1.0 90,676 - IAI47_00405 0.40 -0.1 90,676 - IAI47_00405 0.40 -1.2 90,676 - IAI47_00405 0.40 +0.2 90,676 - IAI47_00405 0.40 -0.0 90,676 - IAI47_00405 0.40 -1.1 90,701 + IAI47_00405 0.45 -0.0 90,701 + IAI47_00405 0.45 +1.8 90,702 - IAI47_00405 0.46 +0.9 90,715 + IAI47_00405 0.48 -1.1 90,715 + IAI47_00405 0.48 -1.7 90,715 + IAI47_00405 0.48 -0.7 90,715 + IAI47_00405 0.48 -0.1 90,715 + IAI47_00405 0.48 -0.3 90,716 - IAI47_00405 0.48 +0.8 90,716 - IAI47_00405 0.48 +0.1 90,716 - IAI47_00405 0.48 +0.1 90,716 - IAI47_00405 0.48 -0.2 90,716 - IAI47_00405 0.48 -0.3 90,716 - IAI47_00405 0.48 +1.4 90,716 - IAI47_00405 0.48 -0.9 90,716 - IAI47_00405 0.48 -0.0 90,817 + IAI47_00405 0.68 +0.4 90,817 + IAI47_00405 0.68 -0.2 90,817 + IAI47_00405 0.68 +0.8 90,817 + IAI47_00405 0.68 -2.0 90,817 + IAI47_00405 0.68 +0.0 90,817 + IAI47_00405 0.68 +0.8 90,817 + IAI47_00405 0.68 -1.2 90,817 + IAI47_00405 0.68 +0.0 90,817 + IAI47_00405 0.68 -0.2 90,817 + IAI47_00405 0.68 +1.5 90,817 + IAI47_00405 0.68 -0.5 90,817 + IAI47_00405 0.68 +0.1 90,818 - IAI47_00405 0.68 -0.7 90,818 - IAI47_00405 0.68 -0.8 90,818 - IAI47_00405 0.68 +0.5 90,818 - IAI47_00405 0.68 +0.3 90,818 - IAI47_00405 0.68 -0.6 90,818 - IAI47_00405 0.68 -0.5 90,818 - IAI47_00405 0.68 +0.3 90,818 - IAI47_00405 0.68 -0.1 90,821 + IAI47_00405 0.69 -0.2 90,821 + IAI47_00405 0.69 -0.5 90,821 + IAI47_00405 0.69 +0.4 90,821 + IAI47_00405 0.69 -0.5 90,821 + IAI47_00405 0.69 -0.6 90,821 + IAI47_00405 0.69 -1.2 90,821 + IAI47_00405 0.69 -0.0 90,821 + IAI47_00405 0.69 -1.0 90,821 + IAI47_00405 0.69 +0.6 90,822 - IAI47_00405 0.69 -0.8 90,822 - IAI47_00405 0.69 +1.4 90,822 - IAI47_00405 0.69 -0.2 90,822 - IAI47_00405 0.69 -2.0 90,822 - IAI47_00405 0.69 -1.7 90,822 - IAI47_00405 0.69 -0.9 90,822 - IAI47_00405 0.69 -1.6 90,822 - IAI47_00405 0.69 -1.4 90,822 - IAI47_00405 0.69 -1.6 90,822 - IAI47_00405 0.69 -0.5 90,822 - IAI47_00405 0.69 -2.1 90,822 - IAI47_00405 0.69 +0.7 90,827 + IAI47_00405 0.70 -1.2 90,827 + IAI47_00405 0.70 -0.3 90,828 - IAI47_00405 0.70 -0.8 90,866 + IAI47_00405 0.78 -0.8 90,866 + IAI47_00405 0.78 -0.3 90,866 + IAI47_00405 0.78 -0.2 90,866 + IAI47_00405 0.78 -1.6 90,866 + IAI47_00405 0.78 +0.8 90,866 + IAI47_00405 0.78 +0.2 90,867 - IAI47_00405 0.78 +1.6 90,867 - IAI47_00405 0.78 +0.4 90,890 + IAI47_00405 0.83 +2.6 90,890 + IAI47_00405 0.83 -0.6 90,918 + IAI47_00405 0.88 -0.7 90,918 + IAI47_00405 0.88 +0.6 90,932 + +1.1 90,933 - +0.7 90,963 + -0.2 90,963 + +0.1 90,963 + -0.6 90,963 + -1.8 90,963 + +1.0 90,963 + -0.5 90,964 - -0.1 90,964 - -0.8 90,964 - -0.3 90,970 - +0.1 90,977 + -0.1 90,977 + +0.4 90,977 + +0.5 90,977 + +0.1 90,977 + -2.4 90,977 + +1.2 90,977 + -1.1 90,977 + +0.4 90,977 + -1.1 90,977 + +0.5 90,977 + +0.4 90,977 + +0.3 90,977 + +0.8 90,977 + +0.6 90,977 + +0.4 90,977 + +0.4 90,977 + +0.1 90,978 - -0.8 90,978 - +0.4 90,978 - -0.3 90,978 - -0.6 90,978 - -0.6 90,978 - -0.6 90,978 - -1.6 90,978 - +1.6 90,978 - +0.9 90,978 - +0.4 90,978 - +0.3 90,978 - +1.2 90,978 - -0.4 91,008 + +0.4 91,008 + +0.6 91,008 + -0.2 91,008 + -0.0 91,008 + +0.3 91,009 - +0.3 91,011 + +0.1 91,011 + -1.2 91,011 + +0.4 91,012 - -1.4 91,012 - -0.2 91,012 - -0.4 91,012 - +0.4 91,012 - -0.0 91,012 - +2.5 91,012 - +1.2 91,012 - +0.3 91,012 - +1.4 91,012 - +1.2 91,012 - +0.4 91,014 + -0.3 91,015 - +0.8 91,015 - -1.0 91,015 - -0.5 91,015 - +2.0 91,015 - -0.5 91,048 + IAI47_00410 0.12 +0.1 91,048 + IAI47_00410 0.12 -1.6 91,048 + IAI47_00410 0.12 -0.2 91,049 - IAI47_00410 0.12 +0.3 91,083 + IAI47_00410 0.18 +0.8 91,083 + IAI47_00410 0.18 -0.4 91,083 + IAI47_00410 0.18 -0.7 91,083 + IAI47_00410 0.18 -0.8 91,084 - IAI47_00410 0.19 +0.6 91,084 - IAI47_00410 0.19 -0.8 91,084 - IAI47_00410 0.19 -2.2 91,084 - IAI47_00410 0.19 -0.1 91,084 - IAI47_00410 0.19 -1.2 91,084 - IAI47_00410 0.19 -1.0 91,084 - IAI47_00410 0.19 -0.0 91,084 - IAI47_00410 0.19 +0.4 91,084 - IAI47_00410 0.19 -0.2 91,084 - IAI47_00410 0.19 -0.0 91,109 + IAI47_00410 0.23 -0.2 91,109 + IAI47_00410 0.23 +1.8 91,110 - IAI47_00410 0.23 -0.6 91,110 - IAI47_00410 0.23 +0.3 91,110 - IAI47_00410 0.23 +0.1 91,110 - IAI47_00410 0.23 -0.6 91,115 + IAI47_00410 0.24 -1.9 91,115 + IAI47_00410 0.24 -0.8 91,115 + IAI47_00410 0.24 -0.6 91,115 + IAI47_00410 0.24 -0.1 91,115 + IAI47_00410 0.24 +0.4 91,116 - IAI47_00410 0.24 -0.5 91,116 - IAI47_00410 0.24 -1.0 91,116 - IAI47_00410 0.24 -0.6 91,116 - IAI47_00410 0.24 +0.8 91,131 + IAI47_00410 0.27 -0.0 91,131 + IAI47_00410 0.27 -1.0 91,131 + IAI47_00410 0.27 +0.8 91,131 + IAI47_00410 0.27 +0.8 91,132 - IAI47_00410 0.27 +0.4 91,233 + IAI47_00410 0.45 +2.1 91,234 - IAI47_00410 0.45 -0.8 91,251 + IAI47_00410 0.48 +1.4 91,251 + IAI47_00410 0.48 -0.4 91,251 + IAI47_00410 0.48 +0.2 91,252 - IAI47_00410 0.48 -1.4 91,252 - IAI47_00410 0.48 +0.2 91,252 - -0.8 91,304 + IAI47_00410 0.57 +1.4 91,304 + IAI47_00410 0.57 -1.6 91,304 + IAI47_00410 0.57 -0.4 91,304 + IAI47_00410 0.57 -0.6 91,304 + IAI47_00410 0.57 +1.3 91,304 + IAI47_00410 0.57 +0.4 91,304 + IAI47_00410 0.57 +0.0 91,304 + IAI47_00410 0.57 -1.2 91,305 - IAI47_00410 0.57 -0.9 91,305 - IAI47_00410 0.57 -0.2 91,305 - IAI47_00410 0.57 -0.2 91,305 - IAI47_00410 0.57 +0.8 91,305 - IAI47_00410 0.57 -1.1 91,305 - IAI47_00410 0.57 -0.0 91,305 - IAI47_00410 0.57 -0.2 91,305 - IAI47_00410 0.57 -0.7 91,305 - IAI47_00410 0.57 +1.8 91,309 - IAI47_00410 0.58 -0.1 91,309 - IAI47_00410 0.58 +0.8 91,329 - IAI47_00410 0.62 -1.8 91,335 - IAI47_00410 0.63 +1.5 91,356 + IAI47_00410 0.66 +0.4 91,356 + IAI47_00410 0.66 -1.5 91,356 + IAI47_00410 0.66 +0.4 91,357 - IAI47_00410 0.67 -0.8 91,357 - IAI47_00410 0.67 -0.5 91,357 - IAI47_00410 0.67 -0.5 91,366 + IAI47_00410 0.68 +1.5 91,367 - IAI47_00410 0.68 +1.8 91,374 - IAI47_00410 0.70 -1.0 91,374 - IAI47_00410 0.70 +0.4 91,374 - IAI47_00410 0.70 -1.3 91,383 + IAI47_00410 0.71 -0.1 91,383 + IAI47_00410 0.71 -0.7 91,383 + IAI47_00410 0.71 +0.3 91,384 - IAI47_00410 0.71 +0.4 91,384 - IAI47_00410 0.71 -1.1
Or see this region's nucleotide sequence