Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03094

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03093 and MPMX20_03094 are separated by 211 nucleotidesMPMX20_03094 and MPMX20_03095 are separated by 69 nucleotidesMPMX20_03095 and MPMX20_03096 overlap by 26 nucleotidesMPMX20_03096 and MPMX20_03097 overlap by 17 nucleotides MPMX20_03093: MPMX20_03093 - Sensor histidine kinase BtsS, at 3,245,600 to 3,247,291 _03093 MPMX20_03094: MPMX20_03094 - HTH-type transcriptional regulator MlrA, at 3,247,503 to 3,248,243 _03094 MPMX20_03095: MPMX20_03095 - hypothetical protein, at 3,248,313 to 3,248,426 _03095 MPMX20_03096: MPMX20_03096 - Glycine betaine uptake system permease protein YehW, at 3,248,401 to 3,249,138 _03096 MPMX20_03097: MPMX20_03097 - Glycine betaine uptake system ATP-binding protein YehX, at 3,249,122 to 3,250,072 _03097 Position (kb) 3247 3248 3249Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3246.549 kb on + strand, within MPMX20_03093at 3246.554 kb on + strand, within MPMX20_03093at 3246.557 kb on - strand, within MPMX20_03093at 3246.591 kb on - strand, within MPMX20_03093at 3246.719 kb on - strand, within MPMX20_03093at 3246.794 kb on - strand, within MPMX20_03093at 3246.853 kb on + strand, within MPMX20_03093at 3246.853 kb on - strand, within MPMX20_03093at 3246.908 kb on + strand, within MPMX20_03093at 3246.921 kb on + strand, within MPMX20_03093at 3246.929 kb on - strand, within MPMX20_03093at 3246.959 kb on + strand, within MPMX20_03093at 3246.959 kb on + strand, within MPMX20_03093at 3246.975 kb on - strand, within MPMX20_03093at 3247.076 kb on - strand, within MPMX20_03093at 3247.146 kb on + strandat 3247.154 kb on - strandat 3247.160 kb on + strandat 3247.168 kb on + strandat 3247.169 kb on + strandat 3247.196 kb on + strandat 3247.254 kb on + strandat 3247.275 kb on + strandat 3247.278 kb on - strandat 3247.309 kb on - strandat 3247.309 kb on - strandat 3247.309 kb on - strandat 3247.315 kb on + strandat 3247.386 kb on - strandat 3247.483 kb on + strandat 3247.491 kb on - strandat 3247.543 kb on - strandat 3247.579 kb on + strand, within MPMX20_03094at 3247.611 kb on - strand, within MPMX20_03094at 3247.681 kb on - strand, within MPMX20_03094at 3247.810 kb on + strand, within MPMX20_03094at 3247.884 kb on - strand, within MPMX20_03094at 3247.925 kb on + strand, within MPMX20_03094at 3248.016 kb on - strand, within MPMX20_03094at 3248.085 kb on + strand, within MPMX20_03094at 3248.186 kb on - strandat 3248.204 kb on + strandat 3248.254 kb on - strandat 3248.256 kb on - strandat 3248.268 kb on - strandat 3248.278 kb on + strandat 3248.286 kb on - strandat 3248.385 kb on - strand, within MPMX20_03095at 3248.385 kb on - strand, within MPMX20_03095at 3248.385 kb on - strand, within MPMX20_03095at 3248.654 kb on + strand, within MPMX20_03096at 3248.681 kb on + strand, within MPMX20_03096at 3248.697 kb on - strand, within MPMX20_03096at 3248.724 kb on + strand, within MPMX20_03096at 3248.916 kb on - strand, within MPMX20_03096at 3248.936 kb on - strand, within MPMX20_03096at 3249.107 kb on + strandat 3249.115 kb on - strandat 3249.139 kb on - strandat 3249.146 kb on - strandat 3249.183 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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3,246,549 + MPMX20_03093 0.56 -0.8
3,246,554 + MPMX20_03093 0.56 -1.0
3,246,557 - MPMX20_03093 0.57 -2.0
3,246,591 - MPMX20_03093 0.59 +0.6
3,246,719 - MPMX20_03093 0.66 -0.8
3,246,794 - MPMX20_03093 0.71 -0.0
3,246,853 + MPMX20_03093 0.74 -0.2
3,246,853 - MPMX20_03093 0.74 -0.5
3,246,908 + MPMX20_03093 0.77 -0.6
3,246,921 + MPMX20_03093 0.78 -0.1
3,246,929 - MPMX20_03093 0.79 +0.7
3,246,959 + MPMX20_03093 0.80 -1.2
3,246,959 + MPMX20_03093 0.80 -0.8
3,246,975 - MPMX20_03093 0.81 -0.4
3,247,076 - MPMX20_03093 0.87 -0.1
3,247,146 + -1.0
3,247,154 - +0.3
3,247,160 + -0.7
3,247,168 + +0.1
3,247,169 + -0.3
3,247,196 + +1.0
3,247,254 + -0.8
3,247,275 + +1.5
3,247,278 - +0.2
3,247,309 - -2.4
3,247,309 - -0.3
3,247,309 - -0.4
3,247,315 + -0.8
3,247,386 - +1.5
3,247,483 + +0.5
3,247,491 - +0.6
3,247,543 - -0.6
3,247,579 + MPMX20_03094 0.10 -1.4
3,247,611 - MPMX20_03094 0.15 -0.0
3,247,681 - MPMX20_03094 0.24 +0.2
3,247,810 + MPMX20_03094 0.41 -1.5
3,247,884 - MPMX20_03094 0.51 -0.4
3,247,925 + MPMX20_03094 0.57 -2.2
3,248,016 - MPMX20_03094 0.69 -1.5
3,248,085 + MPMX20_03094 0.79 -1.8
3,248,186 - +0.5
3,248,204 + +0.7
3,248,254 - -0.2
3,248,256 - -0.0
3,248,268 - -0.3
3,248,278 + +0.5
3,248,286 - -1.3
3,248,385 - MPMX20_03095 0.63 +1.0
3,248,385 - MPMX20_03095 0.63 -2.4
3,248,385 - MPMX20_03095 0.63 -2.2
3,248,654 + MPMX20_03096 0.34 +0.0
3,248,681 + MPMX20_03096 0.38 -1.7
3,248,697 - MPMX20_03096 0.40 +0.1
3,248,724 + MPMX20_03096 0.44 -0.3
3,248,916 - MPMX20_03096 0.70 +2.8
3,248,936 - MPMX20_03096 0.72 -0.6
3,249,107 + +0.4
3,249,115 - -1.5
3,249,139 - +0.8
3,249,146 - +0.4
3,249,183 - -0.0

Or see this region's nucleotide sequence