Experiment: Uridine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03093 and MPMX20_03094 are separated by 211 nucleotides MPMX20_03094 and MPMX20_03095 are separated by 69 nucleotides MPMX20_03095 and MPMX20_03096 overlap by 26 nucleotides MPMX20_03096 and MPMX20_03097 overlap by 17 nucleotides
MPMX20_03093: MPMX20_03093 - Sensor histidine kinase BtsS, at 3,245,600 to 3,247,291
_03093
MPMX20_03094: MPMX20_03094 - HTH-type transcriptional regulator MlrA, at 3,247,503 to 3,248,243
_03094
MPMX20_03095: MPMX20_03095 - hypothetical protein, at 3,248,313 to 3,248,426
_03095
MPMX20_03096: MPMX20_03096 - Glycine betaine uptake system permease protein YehW, at 3,248,401 to 3,249,138
_03096
MPMX20_03097: MPMX20_03097 - Glycine betaine uptake system ATP-binding protein YehX, at 3,249,122 to 3,250,072
_03097
Position (kb)
3247
3248
3249 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3246.549 kb on + strand, within MPMX20_03093 at 3246.554 kb on + strand, within MPMX20_03093 at 3246.557 kb on - strand, within MPMX20_03093 at 3246.591 kb on - strand, within MPMX20_03093 at 3246.719 kb on - strand, within MPMX20_03093 at 3246.794 kb on - strand, within MPMX20_03093 at 3246.853 kb on + strand, within MPMX20_03093 at 3246.853 kb on - strand, within MPMX20_03093 at 3246.908 kb on + strand, within MPMX20_03093 at 3246.921 kb on + strand, within MPMX20_03093 at 3246.929 kb on - strand, within MPMX20_03093 at 3246.959 kb on + strand, within MPMX20_03093 at 3246.959 kb on + strand, within MPMX20_03093 at 3246.975 kb on - strand, within MPMX20_03093 at 3247.076 kb on - strand, within MPMX20_03093 at 3247.146 kb on + strand at 3247.154 kb on - strand at 3247.160 kb on + strand at 3247.168 kb on + strand at 3247.169 kb on + strand at 3247.196 kb on + strand at 3247.254 kb on + strand at 3247.275 kb on + strand at 3247.278 kb on - strand at 3247.309 kb on - strand at 3247.309 kb on - strand at 3247.309 kb on - strand at 3247.315 kb on + strand at 3247.386 kb on - strand at 3247.483 kb on + strand at 3247.491 kb on - strand at 3247.543 kb on - strand at 3247.579 kb on + strand, within MPMX20_03094 at 3247.611 kb on - strand, within MPMX20_03094 at 3247.681 kb on - strand, within MPMX20_03094 at 3247.810 kb on + strand, within MPMX20_03094 at 3247.884 kb on - strand, within MPMX20_03094 at 3247.925 kb on + strand, within MPMX20_03094 at 3248.016 kb on - strand, within MPMX20_03094 at 3248.085 kb on + strand, within MPMX20_03094 at 3248.186 kb on - strand at 3248.204 kb on + strand at 3248.254 kb on - strand at 3248.256 kb on - strand at 3248.268 kb on - strand at 3248.278 kb on + strand at 3248.286 kb on - strand at 3248.385 kb on - strand, within MPMX20_03095 at 3248.385 kb on - strand, within MPMX20_03095 at 3248.385 kb on - strand, within MPMX20_03095 at 3248.654 kb on + strand, within MPMX20_03096 at 3248.681 kb on + strand, within MPMX20_03096 at 3248.697 kb on - strand, within MPMX20_03096 at 3248.724 kb on + strand, within MPMX20_03096 at 3248.916 kb on - strand, within MPMX20_03096 at 3248.936 kb on - strand, within MPMX20_03096 at 3249.107 kb on + strand at 3249.115 kb on - strand at 3249.139 kb on - strand at 3249.146 kb on - strand at 3249.183 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (N) remove 3,246,549 + MPMX20_03093 0.56 -0.8 3,246,554 + MPMX20_03093 0.56 -1.0 3,246,557 - MPMX20_03093 0.57 -2.0 3,246,591 - MPMX20_03093 0.59 +0.6 3,246,719 - MPMX20_03093 0.66 -0.8 3,246,794 - MPMX20_03093 0.71 -0.0 3,246,853 + MPMX20_03093 0.74 -0.2 3,246,853 - MPMX20_03093 0.74 -0.5 3,246,908 + MPMX20_03093 0.77 -0.6 3,246,921 + MPMX20_03093 0.78 -0.1 3,246,929 - MPMX20_03093 0.79 +0.7 3,246,959 + MPMX20_03093 0.80 -1.2 3,246,959 + MPMX20_03093 0.80 -0.8 3,246,975 - MPMX20_03093 0.81 -0.4 3,247,076 - MPMX20_03093 0.87 -0.1 3,247,146 + -1.0 3,247,154 - +0.3 3,247,160 + -0.7 3,247,168 + +0.1 3,247,169 + -0.3 3,247,196 + +1.0 3,247,254 + -0.8 3,247,275 + +1.5 3,247,278 - +0.2 3,247,309 - -2.4 3,247,309 - -0.3 3,247,309 - -0.4 3,247,315 + -0.8 3,247,386 - +1.5 3,247,483 + +0.5 3,247,491 - +0.6 3,247,543 - -0.6 3,247,579 + MPMX20_03094 0.10 -1.4 3,247,611 - MPMX20_03094 0.15 -0.0 3,247,681 - MPMX20_03094 0.24 +0.2 3,247,810 + MPMX20_03094 0.41 -1.5 3,247,884 - MPMX20_03094 0.51 -0.4 3,247,925 + MPMX20_03094 0.57 -2.2 3,248,016 - MPMX20_03094 0.69 -1.5 3,248,085 + MPMX20_03094 0.79 -1.8 3,248,186 - +0.5 3,248,204 + +0.7 3,248,254 - -0.2 3,248,256 - -0.0 3,248,268 - -0.3 3,248,278 + +0.5 3,248,286 - -1.3 3,248,385 - MPMX20_03095 0.63 +1.0 3,248,385 - MPMX20_03095 0.63 -2.4 3,248,385 - MPMX20_03095 0.63 -2.2 3,248,654 + MPMX20_03096 0.34 +0.0 3,248,681 + MPMX20_03096 0.38 -1.7 3,248,697 - MPMX20_03096 0.40 +0.1 3,248,724 + MPMX20_03096 0.44 -0.3 3,248,916 - MPMX20_03096 0.70 +2.8 3,248,936 - MPMX20_03096 0.72 -0.6 3,249,107 + +0.4 3,249,115 - -1.5 3,249,139 - +0.8 3,249,146 - +0.4 3,249,183 - -0.0
Or see this region's nucleotide sequence