Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01051

Experiment: Adenosine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_01049 and MPMX20_01050 are separated by 87 nucleotidesMPMX20_01050 and MPMX20_01051 are separated by 78 nucleotidesMPMX20_01051 and MPMX20_01052 are separated by 103 nucleotides MPMX20_01049: MPMX20_01049 - HTH-type transcriptional regulator NorG, at 1,103,646 to 1,105,067 _01049 MPMX20_01050: MPMX20_01050 - hypothetical protein, at 1,105,155 to 1,105,766 _01050 MPMX20_01051: MPMX20_01051 - Lactose operon repressor, at 1,105,845 to 1,106,915 _01051 MPMX20_01052: MPMX20_01052 - Beta-galactosidase, at 1,107,019 to 1,110,111 _01052 Position (kb) 1105 1106 1107Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1104.859 kb on + strand, within MPMX20_01049at 1104.872 kb on - strand, within MPMX20_01049at 1104.879 kb on + strand, within MPMX20_01049at 1104.888 kb on - strand, within MPMX20_01049at 1104.910 kb on - strand, within MPMX20_01049at 1104.920 kb on + strand, within MPMX20_01049at 1104.967 kb on - strandat 1105.000 kb on + strandat 1105.013 kb on - strandat 1105.176 kb on - strandat 1105.194 kb on - strandat 1105.223 kb on - strand, within MPMX20_01050at 1105.263 kb on - strand, within MPMX20_01050at 1105.263 kb on - strand, within MPMX20_01050at 1105.263 kb on - strand, within MPMX20_01050at 1105.427 kb on - strand, within MPMX20_01050at 1105.434 kb on - strand, within MPMX20_01050at 1105.482 kb on - strand, within MPMX20_01050at 1105.505 kb on + strand, within MPMX20_01050at 1105.519 kb on + strand, within MPMX20_01050at 1105.553 kb on - strand, within MPMX20_01050at 1105.608 kb on - strand, within MPMX20_01050at 1105.627 kb on + strand, within MPMX20_01050at 1105.715 kb on - strandat 1105.717 kb on + strandat 1105.875 kb on - strandat 1105.877 kb on + strandat 1105.934 kb on - strandat 1106.001 kb on + strand, within MPMX20_01051at 1106.106 kb on + strand, within MPMX20_01051at 1106.106 kb on + strand, within MPMX20_01051at 1106.114 kb on - strand, within MPMX20_01051at 1106.151 kb on + strand, within MPMX20_01051at 1106.154 kb on - strand, within MPMX20_01051at 1106.156 kb on + strand, within MPMX20_01051at 1106.252 kb on - strand, within MPMX20_01051at 1106.294 kb on - strand, within MPMX20_01051at 1106.311 kb on + strand, within MPMX20_01051at 1106.318 kb on + strand, within MPMX20_01051at 1106.328 kb on + strand, within MPMX20_01051at 1106.402 kb on + strand, within MPMX20_01051at 1106.436 kb on + strand, within MPMX20_01051at 1106.444 kb on - strand, within MPMX20_01051at 1106.444 kb on - strand, within MPMX20_01051at 1106.459 kb on + strand, within MPMX20_01051at 1106.467 kb on - strand, within MPMX20_01051at 1106.492 kb on + strand, within MPMX20_01051at 1106.584 kb on - strand, within MPMX20_01051at 1106.606 kb on - strand, within MPMX20_01051at 1106.713 kb on - strand, within MPMX20_01051at 1106.759 kb on + strand, within MPMX20_01051at 1106.767 kb on - strand, within MPMX20_01051at 1106.856 kb on + strandat 1106.857 kb on + strandat 1106.861 kb on + strandat 1106.865 kb on - strandat 1106.870 kb on + strandat 1106.870 kb on + strandat 1107.107 kb on - strandat 1107.129 kb on - strandat 1107.136 kb on + strandat 1107.144 kb on - strandat 1107.322 kb on - strandat 1107.336 kb on - strand, within MPMX20_01052at 1107.401 kb on + strand, within MPMX20_01052at 1107.412 kb on + strand, within MPMX20_01052at 1107.448 kb on + strand, within MPMX20_01052at 1107.488 kb on - strand, within MPMX20_01052at 1107.491 kb on - strand, within MPMX20_01052at 1107.586 kb on + strand, within MPMX20_01052at 1107.619 kb on + strand, within MPMX20_01052at 1107.627 kb on - strand, within MPMX20_01052at 1107.660 kb on + strand, within MPMX20_01052at 1107.669 kb on + strand, within MPMX20_01052at 1107.669 kb on + strand, within MPMX20_01052at 1107.672 kb on - strand, within MPMX20_01052at 1107.702 kb on + strand, within MPMX20_01052at 1107.722 kb on - strand, within MPMX20_01052at 1107.732 kb on - strand, within MPMX20_01052at 1107.739 kb on + strand, within MPMX20_01052at 1107.739 kb on + strand, within MPMX20_01052at 1107.749 kb on - strand, within MPMX20_01052at 1107.749 kb on - strand, within MPMX20_01052at 1107.783 kb on + strand, within MPMX20_01052at 1107.794 kb on + strand, within MPMX20_01052at 1107.802 kb on + strand, within MPMX20_01052at 1107.802 kb on - strand, within MPMX20_01052at 1107.802 kb on - strand, within MPMX20_01052at 1107.905 kb on + strand, within MPMX20_01052

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Adenosine (N)
remove
1,104,859 + MPMX20_01049 0.85 -0.4
1,104,872 - MPMX20_01049 0.86 -1.5
1,104,879 + MPMX20_01049 0.87 -1.9
1,104,888 - MPMX20_01049 0.87 -0.4
1,104,910 - MPMX20_01049 0.89 -0.3
1,104,920 + MPMX20_01049 0.90 -2.1
1,104,967 - -1.8
1,105,000 + +0.2
1,105,013 - +1.2
1,105,176 - -1.3
1,105,194 - -0.7
1,105,223 - MPMX20_01050 0.11 -0.2
1,105,263 - MPMX20_01050 0.18 -1.3
1,105,263 - MPMX20_01050 0.18 -0.7
1,105,263 - MPMX20_01050 0.18 -0.1
1,105,427 - MPMX20_01050 0.44 +0.3
1,105,434 - MPMX20_01050 0.46 +1.2
1,105,482 - MPMX20_01050 0.53 -0.5
1,105,505 + MPMX20_01050 0.57 -0.2
1,105,519 + MPMX20_01050 0.59 -1.3
1,105,553 - MPMX20_01050 0.65 -0.7
1,105,608 - MPMX20_01050 0.74 -1.6
1,105,627 + MPMX20_01050 0.77 -0.8
1,105,715 - +0.7
1,105,717 + +0.3
1,105,875 - -1.5
1,105,877 + -0.3
1,105,934 - +0.1
1,106,001 + MPMX20_01051 0.15 -1.0
1,106,106 + MPMX20_01051 0.24 -0.2
1,106,106 + MPMX20_01051 0.24 +0.1
1,106,114 - MPMX20_01051 0.25 -0.0
1,106,151 + MPMX20_01051 0.29 -0.1
1,106,154 - MPMX20_01051 0.29 -1.5
1,106,156 + MPMX20_01051 0.29 +0.3
1,106,252 - MPMX20_01051 0.38 -1.2
1,106,294 - MPMX20_01051 0.42 -0.3
1,106,311 + MPMX20_01051 0.44 +0.4
1,106,318 + MPMX20_01051 0.44 -1.1
1,106,328 + MPMX20_01051 0.45 -0.5
1,106,402 + MPMX20_01051 0.52 -2.3
1,106,436 + MPMX20_01051 0.55 -3.5
1,106,444 - MPMX20_01051 0.56 -0.3
1,106,444 - MPMX20_01051 0.56 -2.1
1,106,459 + MPMX20_01051 0.57 -1.3
1,106,467 - MPMX20_01051 0.58 -0.1
1,106,492 + MPMX20_01051 0.60 -1.9
1,106,584 - MPMX20_01051 0.69 +0.4
1,106,606 - MPMX20_01051 0.71 -0.0
1,106,713 - MPMX20_01051 0.81 +0.7
1,106,759 + MPMX20_01051 0.85 -0.2
1,106,767 - MPMX20_01051 0.86 -2.4
1,106,856 + -0.3
1,106,857 + +0.7
1,106,861 + -0.8
1,106,865 - +0.3
1,106,870 + +0.4
1,106,870 + +0.5
1,107,107 - +0.3
1,107,129 - +0.1
1,107,136 + -0.2
1,107,144 - -2.0
1,107,322 - +2.2
1,107,336 - MPMX20_01052 0.10 -0.7
1,107,401 + MPMX20_01052 0.12 -0.6
1,107,412 + MPMX20_01052 0.13 -1.2
1,107,448 + MPMX20_01052 0.14 +0.2
1,107,488 - MPMX20_01052 0.15 +0.2
1,107,491 - MPMX20_01052 0.15 +0.0
1,107,586 + MPMX20_01052 0.18 +0.1
1,107,619 + MPMX20_01052 0.19 -0.8
1,107,627 - MPMX20_01052 0.20 +0.0
1,107,660 + MPMX20_01052 0.21 -0.1
1,107,669 + MPMX20_01052 0.21 -1.0
1,107,669 + MPMX20_01052 0.21 -0.2
1,107,672 - MPMX20_01052 0.21 -0.7
1,107,702 + MPMX20_01052 0.22 -0.6
1,107,722 - MPMX20_01052 0.23 +0.6
1,107,732 - MPMX20_01052 0.23 -1.7
1,107,739 + MPMX20_01052 0.23 +0.5
1,107,739 + MPMX20_01052 0.23 +1.0
1,107,749 - MPMX20_01052 0.24 +0.5
1,107,749 - MPMX20_01052 0.24 +0.4
1,107,783 + MPMX20_01052 0.25 -0.8
1,107,794 + MPMX20_01052 0.25 -0.6
1,107,802 + MPMX20_01052 0.25 -0.2
1,107,802 - MPMX20_01052 0.25 +1.2
1,107,802 - MPMX20_01052 0.25 +0.2
1,107,905 + MPMX20_01052 0.29 -0.0

Or see this region's nucleotide sequence