Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03900

Experiment: Parabanic Acid (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03898 and MPMX20_03899 are separated by 10 nucleotidesMPMX20_03899 and MPMX20_03900 are separated by 10 nucleotidesMPMX20_03900 and MPMX20_03901 overlap by 8 nucleotides MPMX20_03898: MPMX20_03898 - Urease accessory protein UreD, at 4,109,144 to 4,109,971 _03898 MPMX20_03899: MPMX20_03899 - Urease subunit gamma, at 4,109,982 to 4,110,284 _03899 MPMX20_03900: MPMX20_03900 - Urease subunit beta, at 4,110,295 to 4,110,609 _03900 MPMX20_03901: MPMX20_03901 - Urease subunit alpha, at 4,110,602 to 4,112,305 _03901 Position (kb) 4110 4111Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4109.361 kb on - strand, within MPMX20_03898at 4109.443 kb on - strand, within MPMX20_03898at 4109.481 kb on + strand, within MPMX20_03898at 4109.488 kb on - strand, within MPMX20_03898at 4109.488 kb on - strand, within MPMX20_03898at 4109.488 kb on - strand, within MPMX20_03898at 4109.488 kb on - strand, within MPMX20_03898at 4109.505 kb on + strand, within MPMX20_03898at 4109.552 kb on + strand, within MPMX20_03898at 4109.560 kb on + strand, within MPMX20_03898at 4109.562 kb on + strand, within MPMX20_03898at 4109.565 kb on - strand, within MPMX20_03898at 4109.582 kb on + strand, within MPMX20_03898at 4109.582 kb on + strand, within MPMX20_03898at 4109.590 kb on - strand, within MPMX20_03898at 4109.590 kb on - strand, within MPMX20_03898at 4109.590 kb on - strand, within MPMX20_03898at 4109.590 kb on - strand, within MPMX20_03898at 4109.590 kb on - strand, within MPMX20_03898at 4109.618 kb on + strand, within MPMX20_03898at 4109.644 kb on - strand, within MPMX20_03898at 4109.664 kb on + strand, within MPMX20_03898at 4109.670 kb on + strand, within MPMX20_03898at 4109.670 kb on + strand, within MPMX20_03898at 4109.749 kb on + strand, within MPMX20_03898at 4109.776 kb on + strand, within MPMX20_03898at 4109.784 kb on - strand, within MPMX20_03898at 4109.784 kb on - strand, within MPMX20_03898at 4109.823 kb on + strand, within MPMX20_03898at 4109.932 kb on + strandat 4109.975 kb on - strandat 4110.025 kb on + strand, within MPMX20_03899at 4110.028 kb on - strand, within MPMX20_03899at 4110.069 kb on - strand, within MPMX20_03899at 4110.090 kb on + strand, within MPMX20_03899at 4110.090 kb on + strand, within MPMX20_03899at 4110.098 kb on - strand, within MPMX20_03899at 4110.224 kb on + strand, within MPMX20_03899at 4110.232 kb on - strand, within MPMX20_03899at 4110.247 kb on + strand, within MPMX20_03899at 4110.247 kb on + strand, within MPMX20_03899at 4110.255 kb on - strandat 4110.255 kb on - strandat 4110.255 kb on - strandat 4110.278 kb on + strandat 4110.278 kb on + strandat 4110.278 kb on + strandat 4110.286 kb on - strandat 4110.286 kb on - strandat 4110.286 kb on - strandat 4110.286 kb on - strandat 4110.288 kb on - strandat 4110.346 kb on + strand, within MPMX20_03900at 4110.407 kb on - strand, within MPMX20_03900at 4110.411 kb on - strand, within MPMX20_03900at 4110.426 kb on + strand, within MPMX20_03900at 4110.426 kb on + strand, within MPMX20_03900at 4110.434 kb on - strand, within MPMX20_03900at 4110.434 kb on - strand, within MPMX20_03900at 4110.538 kb on + strand, within MPMX20_03900at 4110.543 kb on + strand, within MPMX20_03900at 4110.594 kb on + strandat 4110.627 kb on + strandat 4110.645 kb on - strandat 4110.675 kb on + strandat 4110.735 kb on - strandat 4110.735 kb on - strandat 4110.762 kb on + strandat 4110.770 kb on - strandat 4110.806 kb on + strand, within MPMX20_03901at 4110.814 kb on - strand, within MPMX20_03901at 4110.823 kb on + strand, within MPMX20_03901at 4110.879 kb on + strand, within MPMX20_03901at 4110.889 kb on + strand, within MPMX20_03901at 4110.889 kb on + strand, within MPMX20_03901at 4110.950 kb on + strand, within MPMX20_03901at 4111.107 kb on + strand, within MPMX20_03901at 4111.178 kb on - strand, within MPMX20_03901at 4111.190 kb on + strand, within MPMX20_03901at 4111.192 kb on - strand, within MPMX20_03901at 4111.197 kb on + strand, within MPMX20_03901at 4111.212 kb on - strand, within MPMX20_03901at 4111.212 kb on - strand, within MPMX20_03901at 4111.214 kb on - strand, within MPMX20_03901at 4111.247 kb on - strand, within MPMX20_03901at 4111.264 kb on + strand, within MPMX20_03901at 4111.283 kb on + strand, within MPMX20_03901at 4111.283 kb on + strand, within MPMX20_03901at 4111.283 kb on + strand, within MPMX20_03901at 4111.291 kb on - strand, within MPMX20_03901at 4111.331 kb on + strand, within MPMX20_03901at 4111.331 kb on + strand, within MPMX20_03901at 4111.341 kb on + strand, within MPMX20_03901at 4111.411 kb on - strand, within MPMX20_03901at 4111.419 kb on + strand, within MPMX20_03901at 4111.460 kb on - strand, within MPMX20_03901at 4111.488 kb on + strand, within MPMX20_03901at 4111.494 kb on - strand, within MPMX20_03901at 4111.495 kb on - strand, within MPMX20_03901at 4111.505 kb on - strand, within MPMX20_03901at 4111.505 kb on - strand, within MPMX20_03901at 4111.507 kb on + strand, within MPMX20_03901at 4111.507 kb on + strand, within MPMX20_03901at 4111.507 kb on + strand, within MPMX20_03901at 4111.515 kb on - strand, within MPMX20_03901at 4111.515 kb on - strand, within MPMX20_03901

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Per-strain Table

Position Strand Gene LocusTag Fraction Parabanic Acid (N)
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4,109,361 - MPMX20_03898 0.26 -3.2
4,109,443 - MPMX20_03898 0.36 -1.5
4,109,481 + MPMX20_03898 0.41 -3.5
4,109,488 - MPMX20_03898 0.42 -3.6
4,109,488 - MPMX20_03898 0.42 -1.9
4,109,488 - MPMX20_03898 0.42 -1.6
4,109,488 - MPMX20_03898 0.42 -3.1
4,109,505 + MPMX20_03898 0.44 -1.3
4,109,552 + MPMX20_03898 0.49 -3.2
4,109,560 + MPMX20_03898 0.50 -0.8
4,109,562 + MPMX20_03898 0.50 -0.7
4,109,565 - MPMX20_03898 0.51 -3.7
4,109,582 + MPMX20_03898 0.53 -1.3
4,109,582 + MPMX20_03898 0.53 +1.5
4,109,590 - MPMX20_03898 0.54 -2.5
4,109,590 - MPMX20_03898 0.54 -1.2
4,109,590 - MPMX20_03898 0.54 -3.8
4,109,590 - MPMX20_03898 0.54 -3.0
4,109,590 - MPMX20_03898 0.54 -0.8
4,109,618 + MPMX20_03898 0.57 -3.3
4,109,644 - MPMX20_03898 0.60 -2.7
4,109,664 + MPMX20_03898 0.63 -2.9
4,109,670 + MPMX20_03898 0.64 -2.2
4,109,670 + MPMX20_03898 0.64 -4.1
4,109,749 + MPMX20_03898 0.73 -2.0
4,109,776 + MPMX20_03898 0.76 -3.1
4,109,784 - MPMX20_03898 0.77 -1.8
4,109,784 - MPMX20_03898 0.77 -4.3
4,109,823 + MPMX20_03898 0.82 -2.3
4,109,932 + -4.5
4,109,975 - -1.8
4,110,025 + MPMX20_03899 0.14 -0.1
4,110,028 - MPMX20_03899 0.15 -1.1
4,110,069 - MPMX20_03899 0.29 -2.7
4,110,090 + MPMX20_03899 0.36 -3.7
4,110,090 + MPMX20_03899 0.36 -0.8
4,110,098 - MPMX20_03899 0.38 -1.1
4,110,224 + MPMX20_03899 0.80 -3.1
4,110,232 - MPMX20_03899 0.83 -0.9
4,110,247 + MPMX20_03899 0.87 -2.3
4,110,247 + MPMX20_03899 0.87 -4.2
4,110,255 - -3.5
4,110,255 - -3.6
4,110,255 - -2.3
4,110,278 + +0.2
4,110,278 + -0.7
4,110,278 + +0.8
4,110,286 - -3.3
4,110,286 - +1.0
4,110,286 - -0.7
4,110,286 - -2.1
4,110,288 - -2.8
4,110,346 + MPMX20_03900 0.16 -3.3
4,110,407 - MPMX20_03900 0.36 -2.4
4,110,411 - MPMX20_03900 0.37 -3.6
4,110,426 + MPMX20_03900 0.42 -2.9
4,110,426 + MPMX20_03900 0.42 -2.3
4,110,434 - MPMX20_03900 0.44 -3.3
4,110,434 - MPMX20_03900 0.44 -2.8
4,110,538 + MPMX20_03900 0.77 -3.9
4,110,543 + MPMX20_03900 0.79 -1.4
4,110,594 + -0.6
4,110,627 + -4.1
4,110,645 - -1.0
4,110,675 + -0.5
4,110,735 - -3.5
4,110,735 - -0.7
4,110,762 + +0.5
4,110,770 - -2.3
4,110,806 + MPMX20_03901 0.12 -1.4
4,110,814 - MPMX20_03901 0.12 -1.8
4,110,823 + MPMX20_03901 0.13 -3.4
4,110,879 + MPMX20_03901 0.16 -3.1
4,110,889 + MPMX20_03901 0.17 -2.4
4,110,889 + MPMX20_03901 0.17 -2.7
4,110,950 + MPMX20_03901 0.20 -2.1
4,111,107 + MPMX20_03901 0.30 -0.3
4,111,178 - MPMX20_03901 0.34 -1.2
4,111,190 + MPMX20_03901 0.35 -2.7
4,111,192 - MPMX20_03901 0.35 -0.7
4,111,197 + MPMX20_03901 0.35 -3.5
4,111,212 - MPMX20_03901 0.36 -3.1
4,111,212 - MPMX20_03901 0.36 -3.3
4,111,214 - MPMX20_03901 0.36 -2.6
4,111,247 - MPMX20_03901 0.38 -0.3
4,111,264 + MPMX20_03901 0.39 -1.6
4,111,283 + MPMX20_03901 0.40 -2.8
4,111,283 + MPMX20_03901 0.40 -3.6
4,111,283 + MPMX20_03901 0.40 -2.0
4,111,291 - MPMX20_03901 0.40 -2.6
4,111,331 + MPMX20_03901 0.43 -3.3
4,111,331 + MPMX20_03901 0.43 -1.8
4,111,341 + MPMX20_03901 0.43 -2.4
4,111,411 - MPMX20_03901 0.47 -2.0
4,111,419 + MPMX20_03901 0.48 -2.7
4,111,460 - MPMX20_03901 0.50 -2.2
4,111,488 + MPMX20_03901 0.52 -0.7
4,111,494 - MPMX20_03901 0.52 -2.6
4,111,495 - MPMX20_03901 0.52 -3.7
4,111,505 - MPMX20_03901 0.53 -2.0
4,111,505 - MPMX20_03901 0.53 -1.1
4,111,507 + MPMX20_03901 0.53 -1.7
4,111,507 + MPMX20_03901 0.53 -4.2
4,111,507 + MPMX20_03901 0.53 -2.0
4,111,515 - MPMX20_03901 0.54 -2.2
4,111,515 - MPMX20_03901 0.54 -1.9

Or see this region's nucleotide sequence